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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
7 108-123 Species denotes new coronavirus Tax:2697049
8 131-141 Species denotes SARS-CoV-2 Tax:2697049
9 186-196 Species denotes SARS-CoV-2 Tax:2697049
10 321-331 Species denotes SARS-CoV-2 Tax:2697049
11 498-515 Species denotes novel coronavirus Tax:2697049
12 56-64 Disease denotes COVID-19 MESH:C000657245
13 76-95 Disease denotes respiratory illness MESH:D012140
16 534-551 Species denotes novel coronavirus Tax:2697049
17 575-585 Species denotes SARS-CoV-2 Tax:2697049
19 638-648 Species denotes SARS-CoV-2 Tax:2697049
21 732-742 Species denotes SARS-CoV-2 Tax:2697049
28 771-786 Species denotes new coronavirus Tax:2697049
29 787-797 Species denotes SARS-CoV-2 Tax:2697049
30 1026-1031 Species denotes Human Tax:9606
31 1035-1040 Species denotes human Tax:9606
32 1057-1067 Species denotes SARS-CoV-2 Tax:2697049
33 955-963 Disease denotes infected MESH:D007239
39 1480-1490 Species denotes SARS-CoV-2 Tax:2697049
40 1654-1664 Species denotes SARS-CoV-2 Tax:2697049
41 1725-1735 Species denotes SARS-CoV-2 Tax:2697049
42 1770-1778 Species denotes patients Tax:9606
43 1761-1769 Disease denotes infected MESH:D007239
46 2831-2849 Gene denotes ORF1ab polyprotein Gene:43740578
47 2752-2762 Species denotes SARS-CoV-2 Tax:2697049
53 2200-2218 Gene denotes ORF1ab polyprotein Gene:43740578
54 2633-2651 Gene denotes ORF1ab polyprotein Gene:43740578
55 2145-2162 Species denotes betacoronaviruses Tax:694002
56 2178-2188 Species denotes SARS-CoV-2 Tax:2697049
57 2465-2475 Species denotes SARS-CoV-2 Tax:2697049
60 4264-4269 Species denotes CoV-2 Tax:2697049
61 5980-5991 CellLine denotes HBCDC-HB-01 CVCL:3694
63 4106-4116 Species denotes SARS-CoV-2 Tax:2697049
67 3201-3219 Gene denotes ORF1ab polyprotein Gene:43740578
68 3004-3014 Species denotes SARS-CoV-2 Tax:2697049
69 3886-3896 Species denotes SARS-CoV-2 Tax:2697049

2_test

Id Subject Object Predicate Lexical cue
32092483-32007627-47573167 834-838 32007627 denotes 2020
32092483-3447015-47573168 2032-2036 3447015 denotes 1987
32092483-32007627-47573169 2392-2396 32007627 denotes 2020
32092483-31226023-47573170 3581-3585 31226023 denotes 2019
T4386 834-838 32007627 denotes 2020
T9126 2032-2036 3447015 denotes 1987
T34600 2392-2396 32007627 denotes 2020
T3166 3581-3585 31226023 denotes 2019

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 310-317 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T2 627-634 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T3 1186-1192 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T4 1213-1219 Body_part denotes saliva http://purl.org/sig/ont/fma/fma59862
T5 1244-1250 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T6 1318-1328 Body_part denotes Nucleotide http://purl.org/sig/ont/fma/fma82740
T7 1643-1650 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T8 1958-1968 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T9 2126-2132 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T10 2168-2174 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T11 2268-2276 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T12 2306-2318 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T13 2335-2342 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T14 2351-2358 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T15 2377-2384 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T16 2454-2461 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T17 2580-2591 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740
T18 2608-2619 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740
T19 2675-2686 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740
T20 2713-2719 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T21 2776-2786 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T22 2875-2881 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T23 2910-2920 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T24 2993-3000 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T25 3119-3127 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T26 3149-3156 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T27 3248-3260 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T28 3280-3287 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T29 3318-3325 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T30 3404-3416 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T31 3460-3472 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T32 3533-3537 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T33 3693-3705 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T34 3832-3843 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T35 3911-3923 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T36 3980-3991 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T37 4096-4102 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T38 4182-4192 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T39 4200-4207 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T40 6494-6501 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T41 6513-6520 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T42 6606-6613 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T43 6925-6931 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1186-1192 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T2 1213-1219 Body_part denotes saliva http://purl.obolibrary.org/obo/UBERON_0001836
T3 1244-1250 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341

LitCovid_AGAC

Id Subject Object Predicate Lexical cue
p63588s9 3723-3745 MPA denotes conformational changes

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 35-43 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T2 56-64 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 131-139 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T4 186-194 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T5 321-329 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 575-583 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T7 638-646 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T8 732-740 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 787-795 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 1057-1065 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T11 1480-1488 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T12 1654-1662 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T13 1725-1733 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T14 2178-2186 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T15 2465-2473 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 2752-2760 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T17 3004-3012 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T18 3886-3894 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T19 4106-4114 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 68-69 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 106-107 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 160-172 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T4 206-207 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 532-533 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T6 769-770 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T7 851-856 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T8 970-973 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T9 1026-1031 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T10 1035-1040 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T11 1068-1071 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T12 1116-1121 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T13 1122-1125 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T14 1342-1345 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T15 1801-1803 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T16 2114-2115 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 2189-2192 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T18 2193-2194 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 2671-2674 http://purl.obolibrary.org/obo/CLO_0050884 denotes ten
T20 2736-2748 http://purl.obolibrary.org/obo/OBI_0000245 denotes organization
T21 3533-3537 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T22 3805-3806 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 4288-4289 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T24 4309-4311 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T25 4315-4316 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T26 4414-4417 http://purl.obolibrary.org/obo/CLO_0002941 denotes EPI
T27 4509-4510 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T28 4865-4866 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T29 4983-4984 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T30 5772-5774 http://purl.obolibrary.org/obo/CLO_0008954 denotes SC
T31 5958-5962 http://purl.obolibrary.org/obo/CLO_0001079 denotes 14 8
T32 5986-5988 http://purl.obolibrary.org/obo/CLO_0003622 denotes HB
T33 6483-6484 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T34 6591-6592 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T35 6621-6624 http://purl.obolibrary.org/obo/CLO_0001079 denotes 148
T36 6914-6915 http://purl.obolibrary.org/obo/CLO_0001020 denotes A

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 1194-1197 Chemical denotes Lin http://purl.obolibrary.org/obo/CHEBI_32386
T2 1318-1328 Chemical denotes Nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T3 1958-1968 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T4 2268-2276 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T5 2306-2318 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T6 2335-2342 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T7 2351-2358 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T8 2377-2384 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T9 2580-2591 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976
T10 2608-2619 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976
T11 2675-2686 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976
T12 2776-2786 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T13 2910-2920 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T14 3119-3127 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T15 3149-3156 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T16 3248-3260 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T17 3280-3287 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T18 3318-3325 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T19 3404-3416 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T20 3460-3472 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T21 3693-3705 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T22 3832-3843 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T23 3832-3837 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T24 3838-3843 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T25 3911-3923 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T26 3980-3991 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T27 3980-3985 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T28 3986-3991 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T29 4182-4192 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T30 4182-4187 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T31 4188-4192 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T32 4200-4207 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T33 4528-4530 Chemical denotes TY http://purl.obolibrary.org/obo/CHEBI_73667
T34 4531-4533 Chemical denotes WK http://purl.obolibrary.org/obo/CHEBI_74872
T35 4892-4894 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T36 5249-5251 Chemical denotes YN http://purl.obolibrary.org/obo/CHEBI_141452
T37 5289-5291 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T38 5468-5470 Chemical denotes KY http://purl.obolibrary.org/obo/CHEBI_73608
T39 5717-5719 Chemical denotes AI http://purl.obolibrary.org/obo/CHEBI_73805|http://purl.obolibrary.org/obo/CHEBI_74007|http://purl.obolibrary.org/obo/CHEBI_74088
T42 6494-6501 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T43 6513-6520 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T44 6606-6613 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 3558-3565 http://purl.obolibrary.org/obo/GO_0009606 denotes tropism
T2 3816-3828 http://purl.obolibrary.org/obo/GO_0051179 denotes localization

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-45 Sentence denotes Genetic diversity and evolution of SARS-CoV-2
T2 47-55 Sentence denotes Abstract
T3 56-142 Sentence denotes COVID-19 is a viral respiratory illness caused by a new coronavirus called SARS-CoV-2.
T4 143-239 Sentence denotes The World Health Organization declared the SARS-CoV-2 outbreak a global public health emergency.
T5 240-407 Sentence denotes We performed genetic analyses of eighty-six complete or near-complete genomes of SARS-CoV-2 and revealed many mutations and deletions on coding and non-coding regions.
T6 408-516 Sentence denotes These observations provided evidence of the genetic diversity and rapid evolution of this novel coronavirus.
T7 518-528 Sentence denotes Highlights
T8 529-586 Sentence denotes • A novel coronavirus is officially known as SARS-CoV-2.
T9 587-663 Sentence denotes • Eighty-six complete or near-complete genomes of SARS-CoV-2 were analyzed.
T10 664-754 Sentence denotes • Many mutations and deletions on coding and non-coding regions of SARS-CoV-2 were found.
T11 756-768 Sentence denotes 1 The study
T12 769-840 Sentence denotes A new coronavirus SARS-CoV-2 is spreading cross the world (Phan, 2020).
T13 841-1025 Sentence denotes Since the virus emerged at the seafood wholesale market at the end of last year (Zhu et al., 2019), the number of infected cases has been rising dramatically (Velavan and Meyer, 2020).
T14 1026-1111 Sentence denotes Human-to-human transmission of SARS-CoV-2 has been confirmed (Nishiura et al., 2020).
T15 1112-1225 Sentence denotes The virus has been detected in bronchoalveolar-lavage (Zhu et al., 2019), sputum (Lin et al., 2020), saliva (K.K.
T16 1226-1317 Sentence denotes To et al., 2020), throat (Bastola et al., 2020) and nasopharyngeal swabs (To et al., 2020).
T17 1318-1459 Sentence denotes Nucleotide substitution has been proposed to be one of the most important mechanisms of viral evolution in nature (Lauring and Andino, 2010).
T18 1460-1572 Sentence denotes The rapid spread of SARS-CoV-2 raises intriguing questions such as whether its evolution is driven by mutations.
T19 1573-1718 Sentence denotes To assess the genetic variation, eighty-six complete or near-complete genomes of SARS-CoV-2 were collected from GISAID [https://www.gisaid.org/].
T20 1719-1943 Sentence denotes These SARS-CoV-2 strains were detected in infected patients from China (50), USA (11), Australia (5), Japan (5), France (4), Singapore (3), England (2), Taiwan (2), South Korea (1), Belgium (1), Germany (1), and Vietnam (1).
T21 1944-2133 Sentence denotes The pair-wise nucleotide sequence alignment was performed by ClustalX2 (Saitou and Nei, 1987), and the sequence of the strain China/WHU01/2020/EPI_ISL_406716 was used as a reference genome.
T22 2134-2398 Sentence denotes Like other betacoronaviruses, the genome of SARS-CoV-2 has a long ORF1ab polyprotein at the 5′ end, followed by four major structural proteins, including the spike surface glycoprotein, small envelope protein, matrix protein, and nucleocapsid protein (Phan, 2020).
T23 2399-2558 Sentence denotes Our genetic analysis discovered three deletions in the genomes of SARS-CoV-2 from Japan (Aichi), USA (Wisconsin), and Australia (Victoria) as shown in Fig. 1 .
T24 2559-2720 Sentence denotes Two deletions (three nucleotides and twenty-four nucleotides) were in the ORF1ab polyprotein, and one deletion (ten nucleotides) was in the 3′ end of the genome.
T25 2721-2882 Sentence denotes Fig. 1 Genomic organization of SARS-CoV-2 and pairwise nucleotide sequence alignment showing deletions in the ORF1ab polyprotein and in the 3′ end of the genome.
T26 2883-3026 Sentence denotes It is interesting that our nucleotide sequence alignment also revealed ninety-three mutations over the entire genomes of SARS-CoV-2 (Table 1 ).
T27 3027-3157 Sentence denotes Forty-two missense mutations were identified in all the major non-structural and structural proteins, except the envelope protein.
T28 3158-3326 Sentence denotes Twenty-nine missense mutations were in the ORF1ab polyprotein, eight in the spike surface glycoprotein, one in the matrix protein, and four in the nucleocapsid protein.
T29 3327-3441 Sentence denotes Of note, three mutations (D354, Y364, and F367) located in the spike surface glycoprotein receptor-binding domain.
T30 3442-3587 Sentence denotes The spike surface glycoprotein plays an essential role in binding to receptors on the host cell and determines host tropism (Fung and Liu, 2019).
T31 3588-3661 Sentence denotes It is also the major target of neutralizing antibodies (Yu et al., 2020).
T32 3662-3795 Sentence denotes Mutations in the spike surface glycoprotein might induce its conformational changes, which probably led to the changing antigenicity.
T33 3796-3951 Sentence denotes To date, a study on localization of amino acids involved in conformational changes of the SARS-CoV-2 spike surface glycoprotein structure is not available.
T34 3952-4057 Sentence denotes The identification of these amino acids is of significance and should be investigated by further studies.
T35 4058-4125 Sentence denotes Table 1 Mutations found in the entire genome of SARS-CoV-2 strains.
T36 4126-4208 Sentence denotes The number in the parentheses indicated the location of amino acid in its protein.
T37 4209-4276 Sentence denotes Genomic region No. nt mutations Missense mutation SARV-CoV-2 strain
T38 4277-4289 Sentence denotes 5′ UTR 8 N/A
T39 4290-4314 Sentence denotes ORF1ab polyprotein 48 29
T40 4315-4381 Sentence denotes A (117) → T USA/CA3/2020/EPI_ISL_408008USA/CA4/2020/EPI_ISL_408009
T41 4382-4428 Sentence denotes P (309) → S France/IDF0515/2020/EPI ISL_408430
T42 4429-4468 Sentence denotes S (428) → N USA/CA1/2020/EPI_ISL_406034
T43 4469-4508 Sentence denotes T (609) → I USA/CA5/2020/EPI_ISL_408010
T44 4509-4557 Sentence denotes A (1176) → V Japan/TY-WK-012/2020/EPI_ISL_408665
T45 4558-4603 Sentence denotes L (1599) → F Korea/KCDC03/2020/EPI_ISL_407193
T46 4604-4671 Sentence denotes I (1607) → V USA/CA3/2020/EPI_ISL_408008USA/CA4/2020/EPI_ISL_408009
T47 4672-4722 Sentence denotes M (2194) → T Shenzhen/SZTH-004/2020/EPI_ISL_406595
T48 4723-4766 Sentence denotes L (2235) → I Wuhan/WH01/2019/EPI_ISL_406798
T49 4767-4819 Sentence denotes I (2244) → T Wuhan/IPBCAMS-WH-03/2019/EPI_ISL_403930
T50 4820-4864 Sentence denotes G (2251) → S Wuhan/WIV05/2019/EPI_ISL_402128
T51 4865-4918 Sentence denotes A (2345) → V Shandong/IVDC-SD-001/2020/EPI_ISL_408482
T52 4919-4971 Sentence denotes G (2534) → V Wuhan/IPBCAMS-WH-05/2020/EPI_ISL_403928
T53 4972-5016 Sentence denotes D (2579) → A Wuhan/WIV07/2019/EPI_ISL_402130
T54 5017-5069 Sentence denotes N (2708) → S Wuhan/IPBCAMS-WH-01/2019/EPI_ISL_402123
T55 5070-5122 Sentence denotes F (2908) → I Wuhan/IPBCAMS-WH-01/2019/EPI_ISL_402123
T56 5123-5170 Sentence denotes T (3058) → I France/IDF0515/2020/EPI_ISL_408430
T57 5171-5223 Sentence denotes S (3099) → L Shenzhen/HKU-SZ-005/2020/EPI_ISL_405839
T58 5224-5448 Sentence denotes L (3606) → F Yunnan/IVDC-YN-003/2020/EPI_ISL_408480Shandong/IVDC-SD-001/2020/EPI_ISL_408482Chongqing/IVDC-CQ-001/2020/EPI_ISL_408481Singapore/3/2020/EPI_ISL_407988France/IDF0515/2020/EPI_ISL_408430USA/AZ1/2020/EPI_ISL_406223
T59 5449-5496 Sentence denotes E (3764) → D Japan/KY-V-029/2020/EPI_ISL_408669
T60 5497-5540 Sentence denotes N (3833) → K Wuhan/WH01/2019/EPI_ISL_406798
T61 5541-5582 Sentence denotes W (5308) → C Taiwan/2/2020/EPI_ISL_406031
T62 5583-5623 Sentence denotes T (5579) → I USA/CA2/2020/EPI_ISL_406036
T63 5624-5697 Sentence denotes I (6075) → T England/02/2020/EPI_ISL_407073England/01/2020/EPI_ISL_407071
T64 5698-5745 Sentence denotes P (6083) → L Japan/AI/I-004/2020/EPI_ISL_407084
T65 5746-5798 Sentence denotes F (6309) → Y Sichuan/IVDC-SC-001/2020/EPI_ISL_408484
T66 5799-5849 Sentence denotes E (6565) → D Shenzhen/SZTH-004/2020/EPI_ISL_406595
T67 5850-5894 Sentence denotes K (6958) → R Wuhan/WIV05/2019/EPI_ISL_402128
T68 5895-5939 Sentence denotes D (7018) → N Wuhan/WIV02/2019/EPI_ISL_402127
T69 5940-5962 Sentence denotes Spike polyprotein 14 8
T70 5963-6011 Sentence denotes F (32) → I Wuhan/HBCDC-HB-01/2019/EPI_ISL_402132
T71 6012-6134 Sentence denotes H (49) → Y Guangdong/20SF174/2020/EPI_ISL_406531Guangdong/20SF040/2020/EPI_ISL_403937Guangdong/20SF028/2020/EPI_ISL_403936
T72 6135-6182 Sentence denotes S (247) → R Australia/VIC01/2020/EPI_ISL_406844
T73 6183-6232 Sentence denotes N (354) → D Shenzhen/SZTH-004/2020/EPI_ISL_406595
T74 6233-6282 Sentence denotes D (364) → Y Shenzhen/SZTH-004/2020/EPI_ISL_406595
T75 6283-6363 Sentence denotes V (367) → F France/IDF0372/2020/EPI_ISL_406596France/IDF0373/2020/EPI_ISL_406597
T76 6364-6411 Sentence denotes D (614) → G Germany/BavPat1/2020/EPI_ISL_406862
T77 6412-6460 Sentence denotes P (1143) → L Australia/QLD02/2020/EPI_ISL_407896
T78 6461-6484 Sentence denotes Intergenic region 5 N/A
T79 6485-6505 Sentence denotes Envelope protein 0 0
T80 6506-6524 Sentence denotes Matrix protein 2 1
T81 6525-6568 Sentence denotes D (209) → H Singapore/2/2020/EPI_ISL_407987
T82 6569-6592 Sentence denotes Intergenic region 6 N/A
T83 6593-6617 Sentence denotes Nucleocapsid protein 7 4
T84 6618-6667 Sentence denotes T (148) → I Shenzhen/SZTH-004/2020/EPI_ISL_406595
T85 6668-6805 Sentence denotes S (194) → L Shenzhen/SZTH-003/2020/EPI_ISL_406594Foshan/20SF207/2020/EPI_ISL_406534USA/CA3/2020/EPI_ISL_408008USA/CA4/2020/EPI_ISL_408009
T86 6806-6853 Sentence denotes S (202) → N Australia/QLD02/2020/EPI_ISL_407896
T87 6854-6903 Sentence denotes P (344) → S Guangzhou/20SF206/2020/EPI_ISL_406533
T88 6904-6915 Sentence denotes 3′UTR 3 N/A
T89 6916-6937 Sentence denotes Complete genome 93 42
T90 6939-6954 Sentence denotes Acknowledgement
T91 6955-7076 Sentence denotes We acknowledge support from Division of Clinical Microbiology, 10.13039/100007408University of Pittsburgh Medical Center.
T92 7078-7111 Sentence denotes Declaration of Competing Interest
T93 7112-7165 Sentence denotes The author declares no competing financial interests.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 76-95 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086