PMC:7105881 / 26340-30935 JSONTXT

Annnotations TAB JSON ListView MergeView

    LitCovid-PubTator

    {"project":"LitCovid-PubTator","denotations":[{"id":"893","span":{"begin":284,"end":287},"obj":"Gene"},{"id":"894","span":{"begin":961,"end":964},"obj":"Gene"},{"id":"895","span":{"begin":1012,"end":1016},"obj":"Gene"},{"id":"896","span":{"begin":2178,"end":2183},"obj":"Gene"},{"id":"897","span":{"begin":2185,"end":2189},"obj":"Gene"},{"id":"898","span":{"begin":2191,"end":2195},"obj":"Gene"},{"id":"899","span":{"begin":2197,"end":2202},"obj":"Gene"},{"id":"900","span":{"begin":3016,"end":3020},"obj":"Gene"},{"id":"901","span":{"begin":3026,"end":3031},"obj":"Gene"},{"id":"902","span":{"begin":3150,"end":3155},"obj":"Gene"},{"id":"903","span":{"begin":3320,"end":3323},"obj":"Gene"},{"id":"904","span":{"begin":3824,"end":3829},"obj":"Gene"},{"id":"905","span":{"begin":3834,"end":3838},"obj":"Gene"},{"id":"906","span":{"begin":4045,"end":4049},"obj":"Gene"},{"id":"907","span":{"begin":4055,"end":4060},"obj":"Gene"},{"id":"908","span":{"begin":4123,"end":4128},"obj":"Gene"},{"id":"909","span":{"begin":4133,"end":4138},"obj":"Gene"},{"id":"910","span":{"begin":4347,"end":4353},"obj":"Gene"},{"id":"911","span":{"begin":529,"end":532},"obj":"Gene"},{"id":"912","span":{"begin":4547,"end":4550},"obj":"Gene"},{"id":"913","span":{"begin":4273,"end":4276},"obj":"Gene"},{"id":"914","span":{"begin":4021,"end":4024},"obj":"Gene"},{"id":"915","span":{"begin":3706,"end":3709},"obj":"Gene"},{"id":"916","span":{"begin":3379,"end":3382},"obj":"Gene"},{"id":"917","span":{"begin":3006,"end":3009},"obj":"Gene"},{"id":"918","span":{"begin":2662,"end":2665},"obj":"Gene"},{"id":"919","span":{"begin":1959,"end":1962},"obj":"Gene"},{"id":"920","span":{"begin":1420,"end":1423},"obj":"Gene"},{"id":"921","span":{"begin":588,"end":591},"obj":"Gene"},{"id":"922","span":{"begin":341,"end":344},"obj":"Gene"},{"id":"923","span":{"begin":164,"end":172},"obj":"Species"},{"id":"924","span":{"begin":239,"end":247},"obj":"Species"},{"id":"925","span":{"begin":308,"end":312},"obj":"Species"},{"id":"926","span":{"begin":321,"end":329},"obj":"Species"},{"id":"927","span":{"begin":407,"end":415},"obj":"Species"},{"id":"928","span":{"begin":555,"end":559},"obj":"Species"},{"id":"929","span":{"begin":568,"end":576},"obj":"Species"},{"id":"930","span":{"begin":610,"end":614},"obj":"Species"},{"id":"931","span":{"begin":678,"end":695},"obj":"Species"},{"id":"932","span":{"begin":728,"end":732},"obj":"Species"},{"id":"933","span":{"begin":751,"end":767},"obj":"Species"},{"id":"934","span":{"begin":899,"end":903},"obj":"Species"},{"id":"935","span":{"begin":923,"end":931},"obj":"Species"},{"id":"936","span":{"begin":982,"end":986},"obj":"Species"},{"id":"937","span":{"begin":1056,"end":1064},"obj":"Species"},{"id":"938","span":{"begin":1150,"end":1166},"obj":"Species"},{"id":"939","span":{"begin":1300,"end":1308},"obj":"Species"},{"id":"940","span":{"begin":1373,"end":1377},"obj":"Species"},{"id":"941","span":{"begin":1379,"end":1386},"obj":"Species"},{"id":"942","span":{"begin":1396,"end":1404},"obj":"Species"},{"id":"943","span":{"begin":1433,"end":1437},"obj":"Species"},{"id":"944","span":{"begin":1442,"end":1449},"obj":"Species"},{"id":"945","span":{"begin":1477,"end":1484},"obj":"Species"},{"id":"946","span":{"begin":1509,"end":1513},"obj":"Species"},{"id":"947","span":{"begin":1526,"end":1533},"obj":"Species"},{"id":"948","span":{"begin":1550,"end":1558},"obj":"Species"},{"id":"949","span":{"begin":1617,"end":1621},"obj":"Species"},{"id":"950","span":{"begin":1640,"end":1648},"obj":"Species"},{"id":"951","span":{"begin":1685,"end":1690},"obj":"Species"},{"id":"952","span":{"begin":1805,"end":1813},"obj":"Species"},{"id":"953","span":{"begin":1924,"end":1928},"obj":"Species"},{"id":"954","span":{"begin":1937,"end":1945},"obj":"Species"},{"id":"955","span":{"begin":2098,"end":2106},"obj":"Species"},{"id":"956","span":{"begin":2129,"end":2137},"obj":"Species"},{"id":"957","span":{"begin":2207,"end":2211},"obj":"Species"},{"id":"958","span":{"begin":2290,"end":2294},"obj":"Species"},{"id":"959","span":{"begin":2313,"end":2321},"obj":"Species"},{"id":"960","span":{"begin":2512,"end":2520},"obj":"Species"},{"id":"961","span":{"begin":2626,"end":2630},"obj":"Species"},{"id":"962","span":{"begin":2640,"end":2648},"obj":"Species"},{"id":"963","span":{"begin":2735,"end":2743},"obj":"Species"},{"id":"964","span":{"begin":2788,"end":2792},"obj":"Species"},{"id":"965","span":{"begin":2811,"end":2819},"obj":"Species"},{"id":"966","span":{"begin":2974,"end":2978},"obj":"Species"},{"id":"967","span":{"begin":2988,"end":2996},"obj":"Species"},{"id":"968","span":{"begin":3036,"end":3040},"obj":"Species"},{"id":"969","span":{"begin":3103,"end":3111},"obj":"Species"},{"id":"970","span":{"begin":3160,"end":3164},"obj":"Species"},{"id":"971","span":{"begin":3231,"end":3239},"obj":"Species"},{"id":"972","span":{"begin":3346,"end":3350},"obj":"Species"},{"id":"973","span":{"begin":3359,"end":3367},"obj":"Species"},{"id":"974","span":{"begin":3401,"end":3405},"obj":"Species"},{"id":"975","span":{"begin":3466,"end":3483},"obj":"Species"},{"id":"976","span":{"begin":3516,"end":3520},"obj":"Species"},{"id":"977","span":{"begin":3539,"end":3555},"obj":"Species"},{"id":"978","span":{"begin":3671,"end":3675},"obj":"Species"},{"id":"979","span":{"begin":3685,"end":3693},"obj":"Species"},{"id":"980","span":{"begin":3732,"end":3736},"obj":"Species"},{"id":"981","span":{"begin":3776,"end":3784},"obj":"Species"},{"id":"982","span":{"begin":3843,"end":3847},"obj":"Species"},{"id":"983","span":{"begin":3897,"end":3905},"obj":"Species"},{"id":"984","span":{"begin":3987,"end":3991},"obj":"Species"},{"id":"985","span":{"begin":4001,"end":4009},"obj":"Species"},{"id":"986","span":{"begin":4065,"end":4069},"obj":"Species"},{"id":"987","span":{"begin":4152,"end":4156},"obj":"Species"},{"id":"988","span":{"begin":4239,"end":4243},"obj":"Species"},{"id":"989","span":{"begin":4253,"end":4261},"obj":"Species"},{"id":"990","span":{"begin":4286,"end":4290},"obj":"Species"},{"id":"991","span":{"begin":4300,"end":4308},"obj":"Species"},{"id":"992","span":{"begin":4358,"end":4362},"obj":"Species"},{"id":"993","span":{"begin":4438,"end":4446},"obj":"Species"},{"id":"994","span":{"begin":4460,"end":4464},"obj":"Species"},{"id":"995","span":{"begin":4469,"end":4476},"obj":"Species"},{"id":"996","span":{"begin":4501,"end":4505},"obj":"Species"},{"id":"997","span":{"begin":4511,"end":4518},"obj":"Species"},{"id":"998","span":{"begin":4527,"end":4535},"obj":"Species"},{"id":"999","span":{"begin":4560,"end":4570},"obj":"Disease"},{"id":"1000","span":{"begin":216,"end":220},"obj":"CellLine"},{"id":"1001","span":{"begin":1560,"end":1564},"obj":"CellLine"},{"id":"1002","span":{"begin":1650,"end":1654},"obj":"CellLine"},{"id":"1003","span":{"begin":1770,"end":1773},"obj":"CellLine"},{"id":"1004","span":{"begin":1782,"end":1785},"obj":"CellLine"},{"id":"1005","span":{"begin":1896,"end":1898},"obj":"CellLine"},{"id":"1006","span":{"begin":2009,"end":2012},"obj":"CellLine"},{"id":"1007","span":{"begin":2030,"end":2040},"obj":"CellLine"},{"id":"1008","span":{"begin":2071,"end":2074},"obj":"CellLine"},{"id":"1009","span":{"begin":2086,"end":2096},"obj":"CellLine"},{"id":"1010","span":{"begin":2230,"end":2240},"obj":"CellLine"},{"id":"1011","span":{"begin":2271,"end":2274},"obj":"CellLine"},{"id":"1012","span":{"begin":2358,"end":2361},"obj":"CellLine"},{"id":"1013","span":{"begin":2382,"end":2392},"obj":"CellLine"},{"id":"1014","span":{"begin":2489,"end":2493},"obj":"CellLine"},{"id":"1015","span":{"begin":2603,"end":2605},"obj":"CellLine"}],"attributes":[{"id":"A893","pred":"tao:has_database_id","subj":"893","obj":"Gene:4352"},{"id":"A894","pred":"tao:has_database_id","subj":"894","obj":"Gene:51428"},{"id":"A895","pred":"tao:has_database_id","subj":"895","obj":"Gene:70008"},{"id":"A896","pred":"tao:has_database_id","subj":"896","obj":"Gene:3458"},{"id":"A897","pred":"tao:has_database_id","subj":"897","obj":"Gene:3558"},{"id":"A898","pred":"tao:has_database_id","subj":"898","obj":"Gene:3565"},{"id":"A899","pred":"tao:has_database_id","subj":"899","obj":"Gene:3586"},{"id":"A900","pred":"tao:has_database_id","subj":"900","obj":"Gene:16017"},{"id":"A901","pred":"tao:has_database_id","subj":"901","obj":"Gene:668478"},{"id":"A902","pred":"tao:has_database_id","subj":"902","obj":"Gene:3458"},{"id":"A903","pred":"tao:has_database_id","subj":"903","obj":"Gene:4352"},{"id":"A904","pred":"tao:has_database_id","subj":"904","obj":"Gene:3458"},{"id":"A905","pred":"tao:has_database_id","subj":"905","obj":"Gene:3565"},{"id":"A906","pred":"tao:has_database_id","subj":"906","obj":"Gene:16017"},{"id":"A907","pred":"tao:has_database_id","subj":"907","obj":"Gene:668478"},{"id":"A908","pred":"tao:has_database_id","subj":"908","obj":"Gene:15978"},{"id":"A909","pred":"tao:has_database_id","subj":"909","obj":"Gene:16153"},{"id":"A910","pred":"tao:has_database_id","subj":"910","obj":"Gene:3458"},{"id":"A911","pred":"tao:has_database_id","subj":"911","obj":"Gene:4352"},{"id":"A912","pred":"tao:has_database_id","subj":"912","obj":"Gene:51428"},{"id":"A913","pred":"tao:has_database_id","subj":"913","obj":"Gene:51428"},{"id":"A914","pred":"tao:has_database_id","subj":"914","obj":"Gene:51428"},{"id":"A915","pred":"tao:has_database_id","subj":"915","obj":"Gene:51428"},{"id":"A916","pred":"tao:has_database_id","subj":"916","obj":"Gene:51428"},{"id":"A917","pred":"tao:has_database_id","subj":"917","obj":"Gene:51428"},{"id":"A918","pred":"tao:has_database_id","subj":"918","obj":"Gene:51428"},{"id":"A919","pred":"tao:has_database_id","subj":"919","obj":"Gene:51428"},{"id":"A920","pred":"tao:has_database_id","subj":"920","obj":"Gene:51428"},{"id":"A921","pred":"tao:has_database_id","subj":"921","obj":"Gene:51428"},{"id":"A922","pred":"tao:has_database_id","subj":"922","obj":"Gene:51428"},{"id":"A923","pred":"tao:has_database_id","subj":"923","obj":"Tax:694009"},{"id":"A924","pred":"tao:has_database_id","subj":"924","obj":"Tax:694009"},{"id":"A925","pred":"tao:has_database_id","subj":"925","obj":"Tax:10090"},{"id":"A926","pred":"tao:has_database_id","subj":"926","obj":"Tax:694009"},{"id":"A927","pred":"tao:has_database_id","subj":"927","obj":"Tax:694009"},{"id":"A928","pred":"tao:has_database_id","subj":"928","obj":"Tax:10090"},{"id":"A929","pred":"tao:has_database_id","subj":"929","obj":"Tax:694009"},{"id":"A930","pred":"tao:has_database_id","subj":"930","obj":"Tax:10090"},{"id":"A931","pred":"tao:has_database_id","subj":"931","obj":"Tax:228330"},{"id":"A932","pred":"tao:has_database_id","subj":"932","obj":"Tax:10090"},{"id":"A933","pred":"tao:has_database_id","subj":"933","obj":"Tax:228330"},{"id":"A934","pred":"tao:has_database_id","subj":"934","obj":"Tax:10090"},{"id":"A935","pred":"tao:has_database_id","subj":"935","obj":"Tax:694009"},{"id":"A936","pred":"tao:has_database_id","subj":"936","obj":"Tax:10090"},{"id":"A937","pred":"tao:has_database_id","subj":"937","obj":"Tax:694009"},{"id":"A938","pred":"tao:has_database_id","subj":"938","obj":"Tax:228330"},{"id":"A939","pred":"tao:has_database_id","subj":"939","obj":"Tax:694009"},{"id":"A940","pred":"tao:has_database_id","subj":"940","obj":"Tax:10090"},{"id":"A941","pred":"tao:has_database_id","subj":"941","obj":"Tax:9986"},{"id":"A942","pred":"tao:has_database_id","subj":"942","obj":"Tax:694009"},{"id":"A943","pred":"tao:has_database_id","subj":"943","obj":"Tax:10090"},{"id":"A944","pred":"tao:has_database_id","subj":"944","obj":"Tax:9986"},{"id":"A945","pred":"tao:has_database_id","subj":"945","obj":"Tax:9986"},{"id":"A946","pred":"tao:has_database_id","subj":"946","obj":"Tax:10090"},{"id":"A947","pred":"tao:has_database_id","subj":"947","obj":"Tax:9986"},{"id":"A948","pred":"tao:has_database_id","subj":"948","obj":"Tax:694009"},{"id":"A949","pred":"tao:has_database_id","subj":"949","obj":"Tax:10090"},{"id":"A950","pred":"tao:has_database_id","subj":"950","obj":"Tax:694009"},{"id":"A951","pred":"tao:has_database_id","subj":"951","obj":"Tax:10090"},{"id":"A952","pred":"tao:has_database_id","subj":"952","obj":"Tax:694009"},{"id":"A953","pred":"tao:has_database_id","subj":"953","obj":"Tax:10090"},{"id":"A954","pred":"tao:has_database_id","subj":"954","obj":"Tax:694009"},{"id":"A955","pred":"tao:has_database_id","subj":"955","obj":"Tax:694009"},{"id":"A956","pred":"tao:has_database_id","subj":"956","obj":"Tax:694009"},{"id":"A957","pred":"tao:has_database_id","subj":"957","obj":"Tax:10090"},{"id":"A958","pred":"tao:has_database_id","subj":"958","obj":"Tax:10090"},{"id":"A959","pred":"tao:has_database_id","subj":"959","obj":"Tax:694009"},{"id":"A960","pred":"tao:has_database_id","subj":"960","obj":"Tax:694009"},{"id":"A961","pred":"tao:has_database_id","subj":"961","obj":"Tax:10090"},{"id":"A962","pred":"tao:has_database_id","subj":"962","obj":"Tax:694009"},{"id":"A963","pred":"tao:has_database_id","subj":"963","obj":"Tax:694009"},{"id":"A964","pred":"tao:has_database_id","subj":"964","obj":"Tax:10090"},{"id":"A965","pred":"tao:has_database_id","subj":"965","obj":"Tax:694009"},{"id":"A966","pred":"tao:has_database_id","subj":"966","obj":"Tax:10090"},{"id":"A967","pred":"tao:has_database_id","subj":"967","obj":"Tax:694009"},{"id":"A968","pred":"tao:has_database_id","subj":"968","obj":"Tax:10090"},{"id":"A969","pred":"tao:has_database_id","subj":"969","obj":"Tax:694009"},{"id":"A970","pred":"tao:has_database_id","subj":"970","obj":"Tax:10090"},{"id":"A971","pred":"tao:has_database_id","subj":"971","obj":"Tax:694009"},{"id":"A972","pred":"tao:has_database_id","subj":"972","obj":"Tax:10090"},{"id":"A973","pred":"tao:has_database_id","subj":"973","obj":"Tax:694009"},{"id":"A974","pred":"tao:has_database_id","subj":"974","obj":"Tax:10090"},{"id":"A975","pred":"tao:has_database_id","subj":"975","obj":"Tax:228330"},{"id":"A976","pred":"tao:has_database_id","subj":"976","obj":"Tax:10090"},{"id":"A977","pred":"tao:has_database_id","subj":"977","obj":"Tax:228330"},{"id":"A978","pred":"tao:has_database_id","subj":"978","obj":"Tax:10090"},{"id":"A979","pred":"tao:has_database_id","subj":"979","obj":"Tax:694009"},{"id":"A980","pred":"tao:has_database_id","subj":"980","obj":"Tax:10090"},{"id":"A981","pred":"tao:has_database_id","subj":"981","obj":"Tax:694009"},{"id":"A982","pred":"tao:has_database_id","subj":"982","obj":"Tax:10090"},{"id":"A983","pred":"tao:has_database_id","subj":"983","obj":"Tax:694009"},{"id":"A984","pred":"tao:has_database_id","subj":"984","obj":"Tax:10090"},{"id":"A985","pred":"tao:has_database_id","subj":"985","obj":"Tax:694009"},{"id":"A986","pred":"tao:has_database_id","subj":"986","obj":"Tax:10090"},{"id":"A987","pred":"tao:has_database_id","subj":"987","obj":"Tax:10090"},{"id":"A988","pred":"tao:has_database_id","subj":"988","obj":"Tax:10090"},{"id":"A989","pred":"tao:has_database_id","subj":"989","obj":"Tax:694009"},{"id":"A990","pred":"tao:has_database_id","subj":"990","obj":"Tax:10090"},{"id":"A991","pred":"tao:has_database_id","subj":"991","obj":"Tax:694009"},{"id":"A992","pred":"tao:has_database_id","subj":"992","obj":"Tax:10090"},{"id":"A993","pred":"tao:has_database_id","subj":"993","obj":"Tax:9606"},{"id":"A994","pred":"tao:has_database_id","subj":"994","obj":"Tax:10090"},{"id":"A995","pred":"tao:has_database_id","subj":"995","obj":"Tax:9986"},{"id":"A996","pred":"tao:has_database_id","subj":"996","obj":"Tax:10090"},{"id":"A997","pred":"tao:has_database_id","subj":"997","obj":"Tax:9986"},{"id":"A998","pred":"tao:has_database_id","subj":"998","obj":"Tax:694009"},{"id":"A999","pred":"tao:has_database_id","subj":"999","obj":"MESH:D001480"},{"id":"A1000","pred":"tao:has_database_id","subj":"1000","obj":"CVCL:5V07"},{"id":"A1001","pred":"tao:has_database_id","subj":"1001","obj":"CVCL:6573"},{"id":"A1002","pred":"tao:has_database_id","subj":"1002","obj":"CVCL:6573"},{"id":"A1003","pred":"tao:has_database_id","subj":"1003","obj":"CVCL:0213"},{"id":"A1004","pred":"tao:has_database_id","subj":"1004","obj":"CVCL:0213"},{"id":"A1005","pred":"tao:has_database_id","subj":"1005","obj":"CVCL:1240"},{"id":"A1006","pred":"tao:has_database_id","subj":"1006","obj":"CVCL:0213"},{"id":"A1007","pred":"tao:has_database_id","subj":"1007","obj":"CVCL:G580"},{"id":"A1008","pred":"tao:has_database_id","subj":"1008","obj":"CVCL:0213"},{"id":"A1009","pred":"tao:has_database_id","subj":"1009","obj":"CVCL:G580"},{"id":"A1010","pred":"tao:has_database_id","subj":"1010","obj":"CVCL:G580"},{"id":"A1011","pred":"tao:has_database_id","subj":"1011","obj":"CVCL:0213"},{"id":"A1012","pred":"tao:has_database_id","subj":"1012","obj":"CVCL:0213"},{"id":"A1013","pred":"tao:has_database_id","subj":"1013","obj":"CVCL:G580"},{"id":"A1014","pred":"tao:has_database_id","subj":"1014","obj":"CVCL:0063"},{"id":"A1015","pred":"tao:has_database_id","subj":"1015","obj":"CVCL:1240"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Name Antigenicity and functionality Adjuvant Route Animal models Antibody response Cellular immune response Protection References\nSubunit vaccines based on SARS-CoV full-length or trimeric S protein\nFL-S and EC-S proteins Bind to SARS-CoV S1, NTD, RBD, and S2-specific mAbs MPL + TDM S.C. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1: 2 × 105), neutralizing (\u003e 1:2.4 × 104) pseudotyped SARS-CoV (Tor2, GD03, and SZ3 strains) N/A N/A He et al., 2006a\nS andS-foldon proteins N/A TiterMax Gold; Alum Hydro+MPL S.C. or I.M. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1:104) in mice, neutralizing (∼2.4 × 102 for S; ∼1:7 × 102 for S-foldon) live SARS-CoV (Urbani strain) N/A Protect vaccinated mice from challenge of SARS-CoV (Urbani strain, 105 TCID50) with undetectable viral load in lungs Li et al., 2013\ntriSpike protein N/A Alum hydro I.P. or S.C. BALB/c mice; Hamsters Elicits SARS-CoV S-specific mucosal and serum Abs (IgA and IgG) in mice and hamsters, blocking S-ACE2 receptor binding and neutralizing live SARS-CoV (HKU-39849 strain); induces ADE N/A Protects vaccinated hamsters from challenge of SARS-CoV (Urbani strain, 103 TCID50) with undetectable or reduced viral load in lungs Kam et al., 2007; Jaume et al., 2012\nSubunit vaccines based on SARS-CoV RBD protein\nRBD-Fc protein N/A Freund’s I.D. or I.M. BALB/c mice; Rabbits Elicits SARS-CoV S/RBD-specific Abs (IgG) in mice and rabbits, neutralizing pseudotyped (rabbits: ≥ 7.3 × 104) and live (mice: 1:4 × 103; rabbits: \u003e 1:1.5 × 104) SARS-CoV (BJ01 strain) N/A Protects majority (4/5) of vaccinated mice from challenge of SARS-CoV (BJ01 strain, 106 TCID50), with one mouse showing mild alveolar damage in lungs He et al., 2004; Du et al., 2007\nRBD193-CHO; RBD219-CHO proteins Binds to SARS-CoV RBD-specific mAbs (neutralizing 24H8, 31H12, 35B5, 33G4, 19B2; non-neutralizing 17H9) Freund’s S.C. BALB/c mice Elicit SARS-CoV RBD-specific Abs, neutralizing pseudotyped (\u003c 1:104 for RBD193-CHO; 1:5.8 × 104 for RBD219-CHO) and live (\u003c 1:103 for RBD193-CHO; 1:103 for RBD219-CHO) SARS-CoV (GZ50 strain) Induce SARS-CoV RBD-specific cellular immune responses (IFN-γ, IL-2, IL-4, IL-10) in mice Protect all (for RBD219-CHO) or majority (3/5, for RBD219-CHO) of vaccinated mice from challenge of SARS-CoV (GZ50 strain, 100 TCID50 for RBD193-CHO; 5 × 105 TCID50 for RBD219-CHO) with undetectable viral RNA or no, to reduced, viral load in lungs Du et al., 2009c, 2010\nRBD-293T protein Binds to SARS-CoV RBD-specific mAbs (neutralizing 24H8, 31H12, 35B5, 33G4, 19B2; non-neutralizing 17H9) SAS S.C. BALB/c mice Elicits SARS-CoV RBD-specific Abs (IgG), neutralizing pseudotyped (1:6.9 × 105) and live (1:1.6 × 103) SARS-CoV (GZ50 strain) N/A Protects all vaccinated mice from challenge of SARS-CoV (GZ50 strain, 100 TCID50) with undetectable viral RNA and viral load in lungs Du et al., 2009b\nS318-510 protein N/A Alum; Alum + CpG S.C. 129S6/SvEv mice Elicits SARS-CoV-specific Abs (IgG, IgG1, and IgG2a) in mice. Reduces neutralization after removing glycosylation Induces SARS-CoV S-specific cellular immune responses (IFN-γ) in mice N/A Zakhartchouk et al., 2007\nSubunit vaccines based on non-RBD SARS-CoV S protein fragments\nS1 and S1-foldon proteins N/A TiterMax Gold; Alum Hydro + MPL S.C. or I.M. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1:104) in mice, neutralizing (1:1.7 × 102 for S1; 1:90 for S1-foldon) live SARS-CoV (Urbani strain) N/A Protect vaccinated mice from challenge of SARS-CoV (Urbani strain, 105 TCID50) with undetectable viral load in lungs Li et al., 2013\nS2 protein N/A Freund’s S.C. BALB/c mice Elicits SARS-CoV S2-specific Abs (IgG, 1:1.6 × 103) in mice with no neutralizing activity Induces SARS-CoV S2-specific cellular immune responses (IFN-γ and IL-4) in mice N/A Guo et al., 2005\nSubunit vaccines based on SARS-CoV non-S structural proteins (i.e. N and M)\nrN protein N/A Freund’s I.P. BALB/c mice Elicits SARS-CoV N-specific Abs (IgG (1:1.8 × 103), IgG1, and IgG2a) in mice Induces cellular immune responses with up-regulated IFN-γ and IL-10 cytokines in mice N/A Zheng et al., 2009\nrN protein N/A Montanide + CpG; Freund’s S.C. BALB/c mice Elicits SARS-CoV N-specific Abs (IgG) in mice Induces SARS-CoV N-specific cellular immune responses (IFN- γ) in mice N/A Liu et al., 2006\nM1-31 and M132-161 peptides Bind to sera from SARS patients or immunized mice and rabbits Freund’s I.D. BALB/c mice; NZW rabbits Induce SARS-CoV M-specific Abs (IgG) in rabbits N/A N/A He et al., 2005b"}

    LitCovid-PD-FMA-UBERON

    {"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T115","span":{"begin":70,"end":78},"obj":"Body_part"},{"id":"T116","span":{"begin":199,"end":206},"obj":"Body_part"},{"id":"T117","span":{"begin":221,"end":229},"obj":"Body_part"},{"id":"T118","span":{"begin":346,"end":349},"obj":"Body_part"},{"id":"T119","span":{"begin":488,"end":496},"obj":"Body_part"},{"id":"T120","span":{"begin":593,"end":596},"obj":"Body_part"},{"id":"T121","span":{"begin":820,"end":825},"obj":"Body_part"},{"id":"T122","span":{"begin":852,"end":859},"obj":"Body_part"},{"id":"T123","span":{"begin":955,"end":960},"obj":"Body_part"},{"id":"T124","span":{"begin":966,"end":969},"obj":"Body_part"},{"id":"T125","span":{"begin":974,"end":977},"obj":"Body_part"},{"id":"T126","span":{"begin":1230,"end":1235},"obj":"Body_part"},{"id":"T127","span":{"begin":1313,"end":1320},"obj":"Body_part"},{"id":"T128","span":{"begin":1328,"end":1335},"obj":"Body_part"},{"id":"T129","span":{"begin":1425,"end":1428},"obj":"Body_part"},{"id":"T130","span":{"begin":1704,"end":1712},"obj":"Body_part"},{"id":"T131","span":{"begin":1723,"end":1728},"obj":"Body_part"},{"id":"T132","span":{"begin":1786,"end":1794},"obj":"Body_part"},{"id":"T133","span":{"begin":2185,"end":2189},"obj":"Body_part"},{"id":"T134","span":{"begin":2418,"end":2421},"obj":"Body_part"},{"id":"T135","span":{"begin":2455,"end":2460},"obj":"Body_part"},{"id":"T136","span":{"begin":2494,"end":2501},"obj":"Body_part"},{"id":"T137","span":{"begin":2667,"end":2670},"obj":"Body_part"},{"id":"T138","span":{"begin":2870,"end":2873},"obj":"Body_part"},{"id":"T139","span":{"begin":2892,"end":2897},"obj":"Body_part"},{"id":"T140","span":{"begin":2925,"end":2932},"obj":"Body_part"},{"id":"T141","span":{"begin":3011,"end":3014},"obj":"Body_part"},{"id":"T142","span":{"begin":3242,"end":3249},"obj":"Body_part"},{"id":"T143","span":{"begin":3277,"end":3285},"obj":"Body_part"},{"id":"T144","span":{"begin":3384,"end":3387},"obj":"Body_part"},{"id":"T145","span":{"begin":3608,"end":3613},"obj":"Body_part"},{"id":"T146","span":{"begin":3634,"end":3641},"obj":"Body_part"},{"id":"T147","span":{"begin":3711,"end":3714},"obj":"Body_part"},{"id":"T148","span":{"begin":3923,"end":3931},"obj":"Body_part"},{"id":"T149","span":{"begin":3950,"end":3957},"obj":"Body_part"},{"id":"T150","span":{"begin":4026,"end":4029},"obj":"Body_part"},{"id":"T151","span":{"begin":4139,"end":4148},"obj":"Body_part"},{"id":"T152","span":{"begin":4185,"end":4192},"obj":"Body_part"},{"id":"T153","span":{"begin":4278,"end":4281},"obj":"Body_part"},{"id":"T154","span":{"begin":4552,"end":4555},"obj":"Body_part"}],"attributes":[{"id":"A115","pred":"fma_id","subj":"T115","obj":"http://purl.org/sig/ont/fma/fma62871"},{"id":"A116","pred":"fma_id","subj":"T116","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A117","pred":"fma_id","subj":"T117","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A118","pred":"fma_id","subj":"T118","obj":"http://purl.org/sig/ont/fma/fma62872"},{"id":"A119","pred":"fma_id","subj":"T119","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A120","pred":"fma_id","subj":"T120","obj":"http://purl.org/sig/ont/fma/fma62872"},{"id":"A121","pred":"fma_id","subj":"T121","obj":"http://purl.org/sig/ont/fma/fma68877"},{"id":"A122","pred":"fma_id","subj":"T122","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A123","pred":"fma_id","subj":"T123","obj":"http://purl.org/sig/ont/fma/fma63083"},{"id":"A124","pred":"fma_id","subj":"T124","obj":"http://purl.org/sig/ont/fma/fma62874"},{"id":"A125","pred":"fma_id","subj":"T125","obj":"http://purl.org/sig/ont/fma/fma62872"},{"id":"A126","pred":"fma_id","subj":"T126","obj":"http://purl.org/sig/ont/fma/fma68877"},{"id":"A127","pred":"fma_id","subj":"T127","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A128","pred":"fma_id","subj":"T128","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A129","pred":"fma_id","subj":"T129","obj":"http://purl.org/sig/ont/fma/fma62872"},{"id":"A130","pred":"fma_id","subj":"T130","obj":"http://purl.org/sig/ont/fma/fma264783"},{"id":"A131","pred":"fma_id","subj":"T131","obj":"http://purl.org/sig/ont/fma/fma68877"},{"id":"A132","pred":"fma_id","subj":"T132","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A133","pred":"fma_id","subj":"T133","obj":"http://purl.org/sig/ont/fma/fma84051"},{"id":"A134","pred":"fma_id","subj":"T134","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A135","pred":"fma_id","subj":"T135","obj":"http://purl.org/sig/ont/fma/fma68877"},{"id":"A136","pred":"fma_id","subj":"T136","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A137","pred":"fma_id","subj":"T137","obj":"http://purl.org/sig/ont/fma/fma62872"},{"id":"A138","pred":"fma_id","subj":"T138","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A139","pred":"fma_id","subj":"T139","obj":"http://purl.org/sig/ont/fma/fma68877"},{"id":"A140","pred":"fma_id","subj":"T140","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A141","pred":"fma_id","subj":"T141","obj":"http://purl.org/sig/ont/fma/fma62872"},{"id":"A142","pred":"fma_id","subj":"T142","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A143","pred":"fma_id","subj":"T143","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A144","pred":"fma_id","subj":"T144","obj":"http://purl.org/sig/ont/fma/fma62872"},{"id":"A145","pred":"fma_id","subj":"T145","obj":"http://purl.org/sig/ont/fma/fma68877"},{"id":"A146","pred":"fma_id","subj":"T146","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A147","pred":"fma_id","subj":"T147","obj":"http://purl.org/sig/ont/fma/fma62872"},{"id":"A148","pred":"fma_id","subj":"T148","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A149","pred":"fma_id","subj":"T149","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A150","pred":"fma_id","subj":"T150","obj":"http://purl.org/sig/ont/fma/fma62872"},{"id":"A151","pred":"fma_id","subj":"T151","obj":"http://purl.org/sig/ont/fma/fma84050"},{"id":"A152","pred":"fma_id","subj":"T152","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A153","pred":"fma_id","subj":"T153","obj":"http://purl.org/sig/ont/fma/fma62872"},{"id":"A154","pred":"fma_id","subj":"T154","obj":"http://purl.org/sig/ont/fma/fma62872"}],"text":"Name Antigenicity and functionality Adjuvant Route Animal models Antibody response Cellular immune response Protection References\nSubunit vaccines based on SARS-CoV full-length or trimeric S protein\nFL-S and EC-S proteins Bind to SARS-CoV S1, NTD, RBD, and S2-specific mAbs MPL + TDM S.C. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1: 2 × 105), neutralizing (\u003e 1:2.4 × 104) pseudotyped SARS-CoV (Tor2, GD03, and SZ3 strains) N/A N/A He et al., 2006a\nS andS-foldon proteins N/A TiterMax Gold; Alum Hydro+MPL S.C. or I.M. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1:104) in mice, neutralizing (∼2.4 × 102 for S; ∼1:7 × 102 for S-foldon) live SARS-CoV (Urbani strain) N/A Protect vaccinated mice from challenge of SARS-CoV (Urbani strain, 105 TCID50) with undetectable viral load in lungs Li et al., 2013\ntriSpike protein N/A Alum hydro I.P. or S.C. BALB/c mice; Hamsters Elicits SARS-CoV S-specific mucosal and serum Abs (IgA and IgG) in mice and hamsters, blocking S-ACE2 receptor binding and neutralizing live SARS-CoV (HKU-39849 strain); induces ADE N/A Protects vaccinated hamsters from challenge of SARS-CoV (Urbani strain, 103 TCID50) with undetectable or reduced viral load in lungs Kam et al., 2007; Jaume et al., 2012\nSubunit vaccines based on SARS-CoV RBD protein\nRBD-Fc protein N/A Freund’s I.D. or I.M. BALB/c mice; Rabbits Elicits SARS-CoV S/RBD-specific Abs (IgG) in mice and rabbits, neutralizing pseudotyped (rabbits: ≥ 7.3 × 104) and live (mice: 1:4 × 103; rabbits: \u003e 1:1.5 × 104) SARS-CoV (BJ01 strain) N/A Protects majority (4/5) of vaccinated mice from challenge of SARS-CoV (BJ01 strain, 106 TCID50), with one mouse showing mild alveolar damage in lungs He et al., 2004; Du et al., 2007\nRBD193-CHO; RBD219-CHO proteins Binds to SARS-CoV RBD-specific mAbs (neutralizing 24H8, 31H12, 35B5, 33G4, 19B2; non-neutralizing 17H9) Freund’s S.C. BALB/c mice Elicit SARS-CoV RBD-specific Abs, neutralizing pseudotyped (\u003c 1:104 for RBD193-CHO; 1:5.8 × 104 for RBD219-CHO) and live (\u003c 1:103 for RBD193-CHO; 1:103 for RBD219-CHO) SARS-CoV (GZ50 strain) Induce SARS-CoV RBD-specific cellular immune responses (IFN-γ, IL-2, IL-4, IL-10) in mice Protect all (for RBD219-CHO) or majority (3/5, for RBD219-CHO) of vaccinated mice from challenge of SARS-CoV (GZ50 strain, 100 TCID50 for RBD193-CHO; 5 × 105 TCID50 for RBD219-CHO) with undetectable viral RNA or no, to reduced, viral load in lungs Du et al., 2009c, 2010\nRBD-293T protein Binds to SARS-CoV RBD-specific mAbs (neutralizing 24H8, 31H12, 35B5, 33G4, 19B2; non-neutralizing 17H9) SAS S.C. BALB/c mice Elicits SARS-CoV RBD-specific Abs (IgG), neutralizing pseudotyped (1:6.9 × 105) and live (1:1.6 × 103) SARS-CoV (GZ50 strain) N/A Protects all vaccinated mice from challenge of SARS-CoV (GZ50 strain, 100 TCID50) with undetectable viral RNA and viral load in lungs Du et al., 2009b\nS318-510 protein N/A Alum; Alum + CpG S.C. 129S6/SvEv mice Elicits SARS-CoV-specific Abs (IgG, IgG1, and IgG2a) in mice. Reduces neutralization after removing glycosylation Induces SARS-CoV S-specific cellular immune responses (IFN-γ) in mice N/A Zakhartchouk et al., 2007\nSubunit vaccines based on non-RBD SARS-CoV S protein fragments\nS1 and S1-foldon proteins N/A TiterMax Gold; Alum Hydro + MPL S.C. or I.M. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1:104) in mice, neutralizing (1:1.7 × 102 for S1; 1:90 for S1-foldon) live SARS-CoV (Urbani strain) N/A Protect vaccinated mice from challenge of SARS-CoV (Urbani strain, 105 TCID50) with undetectable viral load in lungs Li et al., 2013\nS2 protein N/A Freund’s S.C. BALB/c mice Elicits SARS-CoV S2-specific Abs (IgG, 1:1.6 × 103) in mice with no neutralizing activity Induces SARS-CoV S2-specific cellular immune responses (IFN-γ and IL-4) in mice N/A Guo et al., 2005\nSubunit vaccines based on SARS-CoV non-S structural proteins (i.e. N and M)\nrN protein N/A Freund’s I.P. BALB/c mice Elicits SARS-CoV N-specific Abs (IgG (1:1.8 × 103), IgG1, and IgG2a) in mice Induces cellular immune responses with up-regulated IFN-γ and IL-10 cytokines in mice N/A Zheng et al., 2009\nrN protein N/A Montanide + CpG; Freund’s S.C. BALB/c mice Elicits SARS-CoV N-specific Abs (IgG) in mice Induces SARS-CoV N-specific cellular immune responses (IFN- γ) in mice N/A Liu et al., 2006\nM1-31 and M132-161 peptides Bind to sera from SARS patients or immunized mice and rabbits Freund’s I.D. BALB/c mice; NZW rabbits Induce SARS-CoV M-specific Abs (IgG) in rabbits N/A N/A He et al., 2005b"}

    LitCovid-PD-UBERON

    {"project":"LitCovid-PD-UBERON","denotations":[{"id":"T11","span":{"begin":955,"end":960},"obj":"Body_part"}],"attributes":[{"id":"A11","pred":"uberon_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/UBERON_0001977"}],"text":"Name Antigenicity and functionality Adjuvant Route Animal models Antibody response Cellular immune response Protection References\nSubunit vaccines based on SARS-CoV full-length or trimeric S protein\nFL-S and EC-S proteins Bind to SARS-CoV S1, NTD, RBD, and S2-specific mAbs MPL + TDM S.C. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1: 2 × 105), neutralizing (\u003e 1:2.4 × 104) pseudotyped SARS-CoV (Tor2, GD03, and SZ3 strains) N/A N/A He et al., 2006a\nS andS-foldon proteins N/A TiterMax Gold; Alum Hydro+MPL S.C. or I.M. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1:104) in mice, neutralizing (∼2.4 × 102 for S; ∼1:7 × 102 for S-foldon) live SARS-CoV (Urbani strain) N/A Protect vaccinated mice from challenge of SARS-CoV (Urbani strain, 105 TCID50) with undetectable viral load in lungs Li et al., 2013\ntriSpike protein N/A Alum hydro I.P. or S.C. BALB/c mice; Hamsters Elicits SARS-CoV S-specific mucosal and serum Abs (IgA and IgG) in mice and hamsters, blocking S-ACE2 receptor binding and neutralizing live SARS-CoV (HKU-39849 strain); induces ADE N/A Protects vaccinated hamsters from challenge of SARS-CoV (Urbani strain, 103 TCID50) with undetectable or reduced viral load in lungs Kam et al., 2007; Jaume et al., 2012\nSubunit vaccines based on SARS-CoV RBD protein\nRBD-Fc protein N/A Freund’s I.D. or I.M. BALB/c mice; Rabbits Elicits SARS-CoV S/RBD-specific Abs (IgG) in mice and rabbits, neutralizing pseudotyped (rabbits: ≥ 7.3 × 104) and live (mice: 1:4 × 103; rabbits: \u003e 1:1.5 × 104) SARS-CoV (BJ01 strain) N/A Protects majority (4/5) of vaccinated mice from challenge of SARS-CoV (BJ01 strain, 106 TCID50), with one mouse showing mild alveolar damage in lungs He et al., 2004; Du et al., 2007\nRBD193-CHO; RBD219-CHO proteins Binds to SARS-CoV RBD-specific mAbs (neutralizing 24H8, 31H12, 35B5, 33G4, 19B2; non-neutralizing 17H9) Freund’s S.C. BALB/c mice Elicit SARS-CoV RBD-specific Abs, neutralizing pseudotyped (\u003c 1:104 for RBD193-CHO; 1:5.8 × 104 for RBD219-CHO) and live (\u003c 1:103 for RBD193-CHO; 1:103 for RBD219-CHO) SARS-CoV (GZ50 strain) Induce SARS-CoV RBD-specific cellular immune responses (IFN-γ, IL-2, IL-4, IL-10) in mice Protect all (for RBD219-CHO) or majority (3/5, for RBD219-CHO) of vaccinated mice from challenge of SARS-CoV (GZ50 strain, 100 TCID50 for RBD193-CHO; 5 × 105 TCID50 for RBD219-CHO) with undetectable viral RNA or no, to reduced, viral load in lungs Du et al., 2009c, 2010\nRBD-293T protein Binds to SARS-CoV RBD-specific mAbs (neutralizing 24H8, 31H12, 35B5, 33G4, 19B2; non-neutralizing 17H9) SAS S.C. BALB/c mice Elicits SARS-CoV RBD-specific Abs (IgG), neutralizing pseudotyped (1:6.9 × 105) and live (1:1.6 × 103) SARS-CoV (GZ50 strain) N/A Protects all vaccinated mice from challenge of SARS-CoV (GZ50 strain, 100 TCID50) with undetectable viral RNA and viral load in lungs Du et al., 2009b\nS318-510 protein N/A Alum; Alum + CpG S.C. 129S6/SvEv mice Elicits SARS-CoV-specific Abs (IgG, IgG1, and IgG2a) in mice. Reduces neutralization after removing glycosylation Induces SARS-CoV S-specific cellular immune responses (IFN-γ) in mice N/A Zakhartchouk et al., 2007\nSubunit vaccines based on non-RBD SARS-CoV S protein fragments\nS1 and S1-foldon proteins N/A TiterMax Gold; Alum Hydro + MPL S.C. or I.M. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1:104) in mice, neutralizing (1:1.7 × 102 for S1; 1:90 for S1-foldon) live SARS-CoV (Urbani strain) N/A Protect vaccinated mice from challenge of SARS-CoV (Urbani strain, 105 TCID50) with undetectable viral load in lungs Li et al., 2013\nS2 protein N/A Freund’s S.C. BALB/c mice Elicits SARS-CoV S2-specific Abs (IgG, 1:1.6 × 103) in mice with no neutralizing activity Induces SARS-CoV S2-specific cellular immune responses (IFN-γ and IL-4) in mice N/A Guo et al., 2005\nSubunit vaccines based on SARS-CoV non-S structural proteins (i.e. N and M)\nrN protein N/A Freund’s I.P. BALB/c mice Elicits SARS-CoV N-specific Abs (IgG (1:1.8 × 103), IgG1, and IgG2a) in mice Induces cellular immune responses with up-regulated IFN-γ and IL-10 cytokines in mice N/A Zheng et al., 2009\nrN protein N/A Montanide + CpG; Freund’s S.C. BALB/c mice Elicits SARS-CoV N-specific Abs (IgG) in mice Induces SARS-CoV N-specific cellular immune responses (IFN- γ) in mice N/A Liu et al., 2006\nM1-31 and M132-161 peptides Bind to sera from SARS patients or immunized mice and rabbits Freund’s I.D. BALB/c mice; NZW rabbits Induce SARS-CoV M-specific Abs (IgG) in rabbits N/A N/A He et al., 2005b"}

    LitCovid-PD-MONDO

    {"project":"LitCovid-PD-MONDO","denotations":[{"id":"T115","span":{"begin":164,"end":172},"obj":"Disease"},{"id":"T116","span":{"begin":239,"end":247},"obj":"Disease"},{"id":"T117","span":{"begin":252,"end":255},"obj":"Disease"},{"id":"T119","span":{"begin":321,"end":329},"obj":"Disease"},{"id":"T120","span":{"begin":407,"end":415},"obj":"Disease"},{"id":"T121","span":{"begin":568,"end":576},"obj":"Disease"},{"id":"T122","span":{"begin":678,"end":686},"obj":"Disease"},{"id":"T123","span":{"begin":751,"end":759},"obj":"Disease"},{"id":"T124","span":{"begin":923,"end":931},"obj":"Disease"},{"id":"T125","span":{"begin":1056,"end":1064},"obj":"Disease"},{"id":"T126","span":{"begin":1093,"end":1096},"obj":"Disease"},{"id":"T127","span":{"begin":1150,"end":1158},"obj":"Disease"},{"id":"T128","span":{"begin":1300,"end":1308},"obj":"Disease"},{"id":"T129","span":{"begin":1396,"end":1404},"obj":"Disease"},{"id":"T130","span":{"begin":1550,"end":1558},"obj":"Disease"},{"id":"T131","span":{"begin":1640,"end":1648},"obj":"Disease"},{"id":"T132","span":{"begin":1805,"end":1813},"obj":"Disease"},{"id":"T133","span":{"begin":1937,"end":1945},"obj":"Disease"},{"id":"T134","span":{"begin":2098,"end":2106},"obj":"Disease"},{"id":"T135","span":{"begin":2129,"end":2137},"obj":"Disease"},{"id":"T136","span":{"begin":2313,"end":2321},"obj":"Disease"},{"id":"T137","span":{"begin":2512,"end":2520},"obj":"Disease"},{"id":"T138","span":{"begin":2640,"end":2648},"obj":"Disease"},{"id":"T139","span":{"begin":2735,"end":2743},"obj":"Disease"},{"id":"T140","span":{"begin":2811,"end":2819},"obj":"Disease"},{"id":"T141","span":{"begin":2988,"end":2996},"obj":"Disease"},{"id":"T142","span":{"begin":3103,"end":3111},"obj":"Disease"},{"id":"T143","span":{"begin":3231,"end":3239},"obj":"Disease"},{"id":"T144","span":{"begin":3359,"end":3367},"obj":"Disease"},{"id":"T145","span":{"begin":3466,"end":3474},"obj":"Disease"},{"id":"T146","span":{"begin":3539,"end":3547},"obj":"Disease"},{"id":"T147","span":{"begin":3685,"end":3693},"obj":"Disease"},{"id":"T148","span":{"begin":3776,"end":3784},"obj":"Disease"},{"id":"T149","span":{"begin":3897,"end":3905},"obj":"Disease"},{"id":"T150","span":{"begin":4001,"end":4009},"obj":"Disease"},{"id":"T151","span":{"begin":4253,"end":4261},"obj":"Disease"},{"id":"T152","span":{"begin":4300,"end":4308},"obj":"Disease"},{"id":"T153","span":{"begin":4433,"end":4437},"obj":"Disease"},{"id":"T154","span":{"begin":4527,"end":4535},"obj":"Disease"}],"attributes":[{"id":"A115","pred":"mondo_id","subj":"T115","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A116","pred":"mondo_id","subj":"T116","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A117","pred":"mondo_id","subj":"T117","obj":"http://purl.obolibrary.org/obo/MONDO_0008449"},{"id":"A118","pred":"mondo_id","subj":"T117","obj":"http://purl.obolibrary.org/obo/MONDO_0018075"},{"id":"A119","pred":"mondo_id","subj":"T119","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A120","pred":"mondo_id","subj":"T120","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A121","pred":"mondo_id","subj":"T121","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A122","pred":"mondo_id","subj":"T122","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A123","pred":"mondo_id","subj":"T123","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A124","pred":"mondo_id","subj":"T124","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A125","pred":"mondo_id","subj":"T125","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A126","pred":"mondo_id","subj":"T126","obj":"http://purl.obolibrary.org/obo/MONDO_0019383"},{"id":"A127","pred":"mondo_id","subj":"T127","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A128","pred":"mondo_id","subj":"T128","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A129","pred":"mondo_id","subj":"T129","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A130","pred":"mondo_id","subj":"T130","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A131","pred":"mondo_id","subj":"T131","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A132","pred":"mondo_id","subj":"T132","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A133","pred":"mondo_id","subj":"T133","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A134","pred":"mondo_id","subj":"T134","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A135","pred":"mondo_id","subj":"T135","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A136","pred":"mondo_id","subj":"T136","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A137","pred":"mondo_id","subj":"T137","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A138","pred":"mondo_id","subj":"T138","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A139","pred":"mondo_id","subj":"T139","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A140","pred":"mondo_id","subj":"T140","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A141","pred":"mondo_id","subj":"T141","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A142","pred":"mondo_id","subj":"T142","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A143","pred":"mondo_id","subj":"T143","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A144","pred":"mondo_id","subj":"T144","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A145","pred":"mondo_id","subj":"T145","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A146","pred":"mondo_id","subj":"T146","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A147","pred":"mondo_id","subj":"T147","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A148","pred":"mondo_id","subj":"T148","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A149","pred":"mondo_id","subj":"T149","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A150","pred":"mondo_id","subj":"T150","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A151","pred":"mondo_id","subj":"T151","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A152","pred":"mondo_id","subj":"T152","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A153","pred":"mondo_id","subj":"T153","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A154","pred":"mondo_id","subj":"T154","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Name Antigenicity and functionality Adjuvant Route Animal models Antibody response Cellular immune response Protection References\nSubunit vaccines based on SARS-CoV full-length or trimeric S protein\nFL-S and EC-S proteins Bind to SARS-CoV S1, NTD, RBD, and S2-specific mAbs MPL + TDM S.C. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1: 2 × 105), neutralizing (\u003e 1:2.4 × 104) pseudotyped SARS-CoV (Tor2, GD03, and SZ3 strains) N/A N/A He et al., 2006a\nS andS-foldon proteins N/A TiterMax Gold; Alum Hydro+MPL S.C. or I.M. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1:104) in mice, neutralizing (∼2.4 × 102 for S; ∼1:7 × 102 for S-foldon) live SARS-CoV (Urbani strain) N/A Protect vaccinated mice from challenge of SARS-CoV (Urbani strain, 105 TCID50) with undetectable viral load in lungs Li et al., 2013\ntriSpike protein N/A Alum hydro I.P. or S.C. BALB/c mice; Hamsters Elicits SARS-CoV S-specific mucosal and serum Abs (IgA and IgG) in mice and hamsters, blocking S-ACE2 receptor binding and neutralizing live SARS-CoV (HKU-39849 strain); induces ADE N/A Protects vaccinated hamsters from challenge of SARS-CoV (Urbani strain, 103 TCID50) with undetectable or reduced viral load in lungs Kam et al., 2007; Jaume et al., 2012\nSubunit vaccines based on SARS-CoV RBD protein\nRBD-Fc protein N/A Freund’s I.D. or I.M. BALB/c mice; Rabbits Elicits SARS-CoV S/RBD-specific Abs (IgG) in mice and rabbits, neutralizing pseudotyped (rabbits: ≥ 7.3 × 104) and live (mice: 1:4 × 103; rabbits: \u003e 1:1.5 × 104) SARS-CoV (BJ01 strain) N/A Protects majority (4/5) of vaccinated mice from challenge of SARS-CoV (BJ01 strain, 106 TCID50), with one mouse showing mild alveolar damage in lungs He et al., 2004; Du et al., 2007\nRBD193-CHO; RBD219-CHO proteins Binds to SARS-CoV RBD-specific mAbs (neutralizing 24H8, 31H12, 35B5, 33G4, 19B2; non-neutralizing 17H9) Freund’s S.C. BALB/c mice Elicit SARS-CoV RBD-specific Abs, neutralizing pseudotyped (\u003c 1:104 for RBD193-CHO; 1:5.8 × 104 for RBD219-CHO) and live (\u003c 1:103 for RBD193-CHO; 1:103 for RBD219-CHO) SARS-CoV (GZ50 strain) Induce SARS-CoV RBD-specific cellular immune responses (IFN-γ, IL-2, IL-4, IL-10) in mice Protect all (for RBD219-CHO) or majority (3/5, for RBD219-CHO) of vaccinated mice from challenge of SARS-CoV (GZ50 strain, 100 TCID50 for RBD193-CHO; 5 × 105 TCID50 for RBD219-CHO) with undetectable viral RNA or no, to reduced, viral load in lungs Du et al., 2009c, 2010\nRBD-293T protein Binds to SARS-CoV RBD-specific mAbs (neutralizing 24H8, 31H12, 35B5, 33G4, 19B2; non-neutralizing 17H9) SAS S.C. BALB/c mice Elicits SARS-CoV RBD-specific Abs (IgG), neutralizing pseudotyped (1:6.9 × 105) and live (1:1.6 × 103) SARS-CoV (GZ50 strain) N/A Protects all vaccinated mice from challenge of SARS-CoV (GZ50 strain, 100 TCID50) with undetectable viral RNA and viral load in lungs Du et al., 2009b\nS318-510 protein N/A Alum; Alum + CpG S.C. 129S6/SvEv mice Elicits SARS-CoV-specific Abs (IgG, IgG1, and IgG2a) in mice. Reduces neutralization after removing glycosylation Induces SARS-CoV S-specific cellular immune responses (IFN-γ) in mice N/A Zakhartchouk et al., 2007\nSubunit vaccines based on non-RBD SARS-CoV S protein fragments\nS1 and S1-foldon proteins N/A TiterMax Gold; Alum Hydro + MPL S.C. or I.M. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1:104) in mice, neutralizing (1:1.7 × 102 for S1; 1:90 for S1-foldon) live SARS-CoV (Urbani strain) N/A Protect vaccinated mice from challenge of SARS-CoV (Urbani strain, 105 TCID50) with undetectable viral load in lungs Li et al., 2013\nS2 protein N/A Freund’s S.C. BALB/c mice Elicits SARS-CoV S2-specific Abs (IgG, 1:1.6 × 103) in mice with no neutralizing activity Induces SARS-CoV S2-specific cellular immune responses (IFN-γ and IL-4) in mice N/A Guo et al., 2005\nSubunit vaccines based on SARS-CoV non-S structural proteins (i.e. N and M)\nrN protein N/A Freund’s I.P. BALB/c mice Elicits SARS-CoV N-specific Abs (IgG (1:1.8 × 103), IgG1, and IgG2a) in mice Induces cellular immune responses with up-regulated IFN-γ and IL-10 cytokines in mice N/A Zheng et al., 2009\nrN protein N/A Montanide + CpG; Freund’s S.C. BALB/c mice Elicits SARS-CoV N-specific Abs (IgG) in mice Induces SARS-CoV N-specific cellular immune responses (IFN- γ) in mice N/A Liu et al., 2006\nM1-31 and M132-161 peptides Bind to sera from SARS patients or immunized mice and rabbits Freund’s I.D. BALB/c mice; NZW rabbits Induce SARS-CoV M-specific Abs (IgG) in rabbits N/A N/A He et al., 2005b"}

    LitCovid-PD-CLO

    {"project":"LitCovid-PD-CLO","denotations":[{"id":"T274","span":{"begin":55,"end":61},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_33208"},{"id":"T275","span":{"begin":207,"end":209},"obj":"http://purl.obolibrary.org/obo/CLO_0003358"},{"id":"T276","span":{"begin":216,"end":218},"obj":"http://purl.obolibrary.org/obo/CLO_0002878"},{"id":"T277","span":{"begin":248,"end":250},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T278","span":{"begin":266,"end":268},"obj":"http://purl.obolibrary.org/obo/CLO_0008922"},{"id":"T279","span":{"begin":266,"end":268},"obj":"http://purl.obolibrary.org/obo/CLO_0050052"},{"id":"T280","span":{"begin":449,"end":450},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T281","span":{"begin":454,"end":455},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T282","span":{"begin":500,"end":501},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T283","span":{"begin":637,"end":640},"obj":"http://purl.obolibrary.org/obo/CLO_0054060"},{"id":"T284","span":{"begin":645,"end":650},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T285","span":{"begin":655,"end":658},"obj":"http://purl.obolibrary.org/obo/CLO_0054060"},{"id":"T286","span":{"begin":706,"end":707},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T287","span":{"begin":820,"end":825},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T288","span":{"begin":827,"end":829},"obj":"http://purl.obolibrary.org/obo/CLO_0001022"},{"id":"T289","span":{"begin":827,"end":829},"obj":"http://purl.obolibrary.org/obo/CLO_0007314"},{"id":"T290","span":{"begin":863,"end":864},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T291","span":{"begin":905,"end":913},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10026"},{"id":"T292","span":{"begin":991,"end":999},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10026"},{"id":"T293","span":{"begin":1100,"end":1101},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T294","span":{"begin":1123,"end":1131},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10026"},{"id":"T295","span":{"begin":1230,"end":1235},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T296","span":{"begin":1325,"end":1327},"obj":"http://purl.obolibrary.org/obo/CLO_0052676"},{"id":"T297","span":{"begin":1339,"end":1340},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T298","span":{"begin":1576,"end":1577},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T299","span":{"begin":1598,"end":1601},"obj":"http://purl.obolibrary.org/obo/CLO_0053799"},{"id":"T300","span":{"begin":1685,"end":1690},"obj":"http://purl.obolibrary.org/obo/CLO_0007836"},{"id":"T301","span":{"begin":1723,"end":1728},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T302","span":{"begin":1770,"end":1773},"obj":"http://purl.obolibrary.org/obo/CLO_0002421"},{"id":"T303","span":{"begin":1770,"end":1773},"obj":"http://purl.obolibrary.org/obo/CLO_0052479"},{"id":"T304","span":{"begin":1770,"end":1773},"obj":"http://purl.obolibrary.org/obo/CLO_0052480"},{"id":"T305","span":{"begin":1770,"end":1773},"obj":"http://purl.obolibrary.org/obo/CLO_0052483"},{"id":"T306","span":{"begin":1770,"end":1773},"obj":"http://purl.obolibrary.org/obo/CLO_0052484"},{"id":"T307","span":{"begin":1770,"end":1773},"obj":"http://purl.obolibrary.org/obo/CLO_0052485"},{"id":"T308","span":{"begin":1782,"end":1785},"obj":"http://purl.obolibrary.org/obo/CLO_0002421"},{"id":"T309","span":{"begin":1782,"end":1785},"obj":"http://purl.obolibrary.org/obo/CLO_0052479"},{"id":"T310","span":{"begin":1782,"end":1785},"obj":"http://purl.obolibrary.org/obo/CLO_0052480"},{"id":"T311","span":{"begin":1782,"end":1785},"obj":"http://purl.obolibrary.org/obo/CLO_0052483"},{"id":"T312","span":{"begin":1782,"end":1785},"obj":"http://purl.obolibrary.org/obo/CLO_0052484"},{"id":"T313","span":{"begin":1782,"end":1785},"obj":"http://purl.obolibrary.org/obo/CLO_0052485"},{"id":"T314","span":{"begin":2009,"end":2012},"obj":"http://purl.obolibrary.org/obo/CLO_0002421"},{"id":"T315","span":{"begin":2009,"end":2012},"obj":"http://purl.obolibrary.org/obo/CLO_0052479"},{"id":"T316","span":{"begin":2009,"end":2012},"obj":"http://purl.obolibrary.org/obo/CLO_0052480"},{"id":"T317","span":{"begin":2009,"end":2012},"obj":"http://purl.obolibrary.org/obo/CLO_0052483"},{"id":"T318","span":{"begin":2009,"end":2012},"obj":"http://purl.obolibrary.org/obo/CLO_0052484"},{"id":"T319","span":{"begin":2009,"end":2012},"obj":"http://purl.obolibrary.org/obo/CLO_0052485"},{"id":"T320","span":{"begin":2037,"end":2040},"obj":"http://purl.obolibrary.org/obo/CLO_0002421"},{"id":"T321","span":{"begin":2037,"end":2040},"obj":"http://purl.obolibrary.org/obo/CLO_0052479"},{"id":"T322","span":{"begin":2037,"end":2040},"obj":"http://purl.obolibrary.org/obo/CLO_0052480"},{"id":"T323","span":{"begin":2037,"end":2040},"obj":"http://purl.obolibrary.org/obo/CLO_0052483"},{"id":"T324","span":{"begin":2037,"end":2040},"obj":"http://purl.obolibrary.org/obo/CLO_0052484"},{"id":"T325","span":{"begin":2037,"end":2040},"obj":"http://purl.obolibrary.org/obo/CLO_0052485"},{"id":"T326","span":{"begin":2071,"end":2074},"obj":"http://purl.obolibrary.org/obo/CLO_0002421"},{"id":"T327","span":{"begin":2071,"end":2074},"obj":"http://purl.obolibrary.org/obo/CLO_0052479"},{"id":"T328","span":{"begin":2071,"end":2074},"obj":"http://purl.obolibrary.org/obo/CLO_0052480"},{"id":"T329","span":{"begin":2071,"end":2074},"obj":"http://purl.obolibrary.org/obo/CLO_0052483"},{"id":"T330","span":{"begin":2071,"end":2074},"obj":"http://purl.obolibrary.org/obo/CLO_0052484"},{"id":"T331","span":{"begin":2071,"end":2074},"obj":"http://purl.obolibrary.org/obo/CLO_0052485"},{"id":"T332","span":{"begin":2093,"end":2096},"obj":"http://purl.obolibrary.org/obo/CLO_0002421"},{"id":"T333","span":{"begin":2093,"end":2096},"obj":"http://purl.obolibrary.org/obo/CLO_0052479"},{"id":"T334","span":{"begin":2093,"end":2096},"obj":"http://purl.obolibrary.org/obo/CLO_0052480"},{"id":"T335","span":{"begin":2093,"end":2096},"obj":"http://purl.obolibrary.org/obo/CLO_0052483"},{"id":"T336","span":{"begin":2093,"end":2096},"obj":"http://purl.obolibrary.org/obo/CLO_0052484"},{"id":"T337","span":{"begin":2093,"end":2096},"obj":"http://purl.obolibrary.org/obo/CLO_0052485"},{"id":"T338","span":{"begin":2185,"end":2189},"obj":"http://purl.obolibrary.org/obo/PR_000001379"},{"id":"T339","span":{"begin":2237,"end":2240},"obj":"http://purl.obolibrary.org/obo/CLO_0002421"},{"id":"T340","span":{"begin":2237,"end":2240},"obj":"http://purl.obolibrary.org/obo/CLO_0052479"},{"id":"T341","span":{"begin":2237,"end":2240},"obj":"http://purl.obolibrary.org/obo/CLO_0052480"},{"id":"T342","span":{"begin":2237,"end":2240},"obj":"http://purl.obolibrary.org/obo/CLO_0052483"},{"id":"T343","span":{"begin":2237,"end":2240},"obj":"http://purl.obolibrary.org/obo/CLO_0052484"},{"id":"T344","span":{"begin":2237,"end":2240},"obj":"http://purl.obolibrary.org/obo/CLO_0052485"},{"id":"T345","span":{"begin":2255,"end":2258},"obj":"http://purl.obolibrary.org/obo/CLO_0001000"},{"id":"T346","span":{"begin":2271,"end":2274},"obj":"http://purl.obolibrary.org/obo/CLO_0002421"},{"id":"T347","span":{"begin":2271,"end":2274},"obj":"http://purl.obolibrary.org/obo/CLO_0052479"},{"id":"T348","span":{"begin":2271,"end":2274},"obj":"http://purl.obolibrary.org/obo/CLO_0052480"},{"id":"T349","span":{"begin":2271,"end":2274},"obj":"http://purl.obolibrary.org/obo/CLO_0052483"},{"id":"T350","span":{"begin":2271,"end":2274},"obj":"http://purl.obolibrary.org/obo/CLO_0052484"},{"id":"T351","span":{"begin":2271,"end":2274},"obj":"http://purl.obolibrary.org/obo/CLO_0052485"},{"id":"T352","span":{"begin":2358,"end":2361},"obj":"http://purl.obolibrary.org/obo/CLO_0002421"},{"id":"T353","span":{"begin":2358,"end":2361},"obj":"http://purl.obolibrary.org/obo/CLO_0052479"},{"id":"T354","span":{"begin":2358,"end":2361},"obj":"http://purl.obolibrary.org/obo/CLO_0052480"},{"id":"T355","span":{"begin":2358,"end":2361},"obj":"http://purl.obolibrary.org/obo/CLO_0052483"},{"id":"T356","span":{"begin":2358,"end":2361},"obj":"http://purl.obolibrary.org/obo/CLO_0052484"},{"id":"T357","span":{"begin":2358,"end":2361},"obj":"http://purl.obolibrary.org/obo/CLO_0052485"},{"id":"T358","span":{"begin":2389,"end":2392},"obj":"http://purl.obolibrary.org/obo/CLO_0002421"},{"id":"T359","span":{"begin":2389,"end":2392},"obj":"http://purl.obolibrary.org/obo/CLO_0052479"},{"id":"T360","span":{"begin":2389,"end":2392},"obj":"http://purl.obolibrary.org/obo/CLO_0052480"},{"id":"T361","span":{"begin":2389,"end":2392},"obj":"http://purl.obolibrary.org/obo/CLO_0052483"},{"id":"T362","span":{"begin":2389,"end":2392},"obj":"http://purl.obolibrary.org/obo/CLO_0052484"},{"id":"T363","span":{"begin":2389,"end":2392},"obj":"http://purl.obolibrary.org/obo/CLO_0052485"},{"id":"T364","span":{"begin":2455,"end":2460},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T365","span":{"begin":2489,"end":2493},"obj":"http://purl.obolibrary.org/obo/CLO_0050894"},{"id":"T366","span":{"begin":2489,"end":2493},"obj":"http://purl.obolibrary.org/obo/CLO_0051650"},{"id":"T367","span":{"begin":2489,"end":2493},"obj":"http://purl.obolibrary.org/obo/CLO_0052052"},{"id":"T368","span":{"begin":2608,"end":2611},"obj":"http://purl.obolibrary.org/obo/CLO_0051568"},{"id":"T369","span":{"begin":2761,"end":2762},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T370","span":{"begin":2892,"end":2897},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T371","span":{"begin":2936,"end":2937},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T372","span":{"begin":3168,"end":3169},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T373","span":{"begin":3260,"end":3262},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T374","span":{"begin":3267,"end":3269},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T375","span":{"begin":3289,"end":3290},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T376","span":{"begin":3429,"end":3432},"obj":"http://purl.obolibrary.org/obo/CLO_0054060"},{"id":"T377","span":{"begin":3437,"end":3439},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T378","span":{"begin":3450,"end":3452},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T379","span":{"begin":3494,"end":3495},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T380","span":{"begin":3608,"end":3613},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T381","span":{"begin":3615,"end":3617},"obj":"http://purl.obolibrary.org/obo/CLO_0001022"},{"id":"T382","span":{"begin":3615,"end":3617},"obj":"http://purl.obolibrary.org/obo/CLO_0007314"},{"id":"T383","span":{"begin":3631,"end":3633},"obj":"http://purl.obolibrary.org/obo/CLO_0008922"},{"id":"T384","span":{"begin":3631,"end":3633},"obj":"http://purl.obolibrary.org/obo/CLO_0050052"},{"id":"T385","span":{"begin":3645,"end":3646},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T386","span":{"begin":3694,"end":3696},"obj":"http://purl.obolibrary.org/obo/CLO_0008922"},{"id":"T387","span":{"begin":3694,"end":3696},"obj":"http://purl.obolibrary.org/obo/CLO_0050052"},{"id":"T388","span":{"begin":3758,"end":3766},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T389","span":{"begin":3785,"end":3787},"obj":"http://purl.obolibrary.org/obo/CLO_0008922"},{"id":"T390","span":{"begin":3785,"end":3787},"obj":"http://purl.obolibrary.org/obo/CLO_0050052"},{"id":"T391","span":{"begin":3851,"end":3852},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T392","span":{"begin":3961,"end":3962},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T393","span":{"begin":4160,"end":4161},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T394","span":{"begin":4196,"end":4197},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T395","span":{"begin":4366,"end":4367},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T396","span":{"begin":4386,"end":4388},"obj":"http://purl.obolibrary.org/obo/CLO_0007448"},{"id":"T397","span":{"begin":4386,"end":4388},"obj":"http://purl.obolibrary.org/obo/CLO_0050175"},{"id":"T398","span":{"begin":4405,"end":4413},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T399","span":{"begin":4571,"end":4572},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T400","span":{"begin":4576,"end":4577},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"Name Antigenicity and functionality Adjuvant Route Animal models Antibody response Cellular immune response Protection References\nSubunit vaccines based on SARS-CoV full-length or trimeric S protein\nFL-S and EC-S proteins Bind to SARS-CoV S1, NTD, RBD, and S2-specific mAbs MPL + TDM S.C. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1: 2 × 105), neutralizing (\u003e 1:2.4 × 104) pseudotyped SARS-CoV (Tor2, GD03, and SZ3 strains) N/A N/A He et al., 2006a\nS andS-foldon proteins N/A TiterMax Gold; Alum Hydro+MPL S.C. or I.M. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1:104) in mice, neutralizing (∼2.4 × 102 for S; ∼1:7 × 102 for S-foldon) live SARS-CoV (Urbani strain) N/A Protect vaccinated mice from challenge of SARS-CoV (Urbani strain, 105 TCID50) with undetectable viral load in lungs Li et al., 2013\ntriSpike protein N/A Alum hydro I.P. or S.C. BALB/c mice; Hamsters Elicits SARS-CoV S-specific mucosal and serum Abs (IgA and IgG) in mice and hamsters, blocking S-ACE2 receptor binding and neutralizing live SARS-CoV (HKU-39849 strain); induces ADE N/A Protects vaccinated hamsters from challenge of SARS-CoV (Urbani strain, 103 TCID50) with undetectable or reduced viral load in lungs Kam et al., 2007; Jaume et al., 2012\nSubunit vaccines based on SARS-CoV RBD protein\nRBD-Fc protein N/A Freund’s I.D. or I.M. BALB/c mice; Rabbits Elicits SARS-CoV S/RBD-specific Abs (IgG) in mice and rabbits, neutralizing pseudotyped (rabbits: ≥ 7.3 × 104) and live (mice: 1:4 × 103; rabbits: \u003e 1:1.5 × 104) SARS-CoV (BJ01 strain) N/A Protects majority (4/5) of vaccinated mice from challenge of SARS-CoV (BJ01 strain, 106 TCID50), with one mouse showing mild alveolar damage in lungs He et al., 2004; Du et al., 2007\nRBD193-CHO; RBD219-CHO proteins Binds to SARS-CoV RBD-specific mAbs (neutralizing 24H8, 31H12, 35B5, 33G4, 19B2; non-neutralizing 17H9) Freund’s S.C. BALB/c mice Elicit SARS-CoV RBD-specific Abs, neutralizing pseudotyped (\u003c 1:104 for RBD193-CHO; 1:5.8 × 104 for RBD219-CHO) and live (\u003c 1:103 for RBD193-CHO; 1:103 for RBD219-CHO) SARS-CoV (GZ50 strain) Induce SARS-CoV RBD-specific cellular immune responses (IFN-γ, IL-2, IL-4, IL-10) in mice Protect all (for RBD219-CHO) or majority (3/5, for RBD219-CHO) of vaccinated mice from challenge of SARS-CoV (GZ50 strain, 100 TCID50 for RBD193-CHO; 5 × 105 TCID50 for RBD219-CHO) with undetectable viral RNA or no, to reduced, viral load in lungs Du et al., 2009c, 2010\nRBD-293T protein Binds to SARS-CoV RBD-specific mAbs (neutralizing 24H8, 31H12, 35B5, 33G4, 19B2; non-neutralizing 17H9) SAS S.C. BALB/c mice Elicits SARS-CoV RBD-specific Abs (IgG), neutralizing pseudotyped (1:6.9 × 105) and live (1:1.6 × 103) SARS-CoV (GZ50 strain) N/A Protects all vaccinated mice from challenge of SARS-CoV (GZ50 strain, 100 TCID50) with undetectable viral RNA and viral load in lungs Du et al., 2009b\nS318-510 protein N/A Alum; Alum + CpG S.C. 129S6/SvEv mice Elicits SARS-CoV-specific Abs (IgG, IgG1, and IgG2a) in mice. Reduces neutralization after removing glycosylation Induces SARS-CoV S-specific cellular immune responses (IFN-γ) in mice N/A Zakhartchouk et al., 2007\nSubunit vaccines based on non-RBD SARS-CoV S protein fragments\nS1 and S1-foldon proteins N/A TiterMax Gold; Alum Hydro + MPL S.C. or I.M. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1:104) in mice, neutralizing (1:1.7 × 102 for S1; 1:90 for S1-foldon) live SARS-CoV (Urbani strain) N/A Protect vaccinated mice from challenge of SARS-CoV (Urbani strain, 105 TCID50) with undetectable viral load in lungs Li et al., 2013\nS2 protein N/A Freund’s S.C. BALB/c mice Elicits SARS-CoV S2-specific Abs (IgG, 1:1.6 × 103) in mice with no neutralizing activity Induces SARS-CoV S2-specific cellular immune responses (IFN-γ and IL-4) in mice N/A Guo et al., 2005\nSubunit vaccines based on SARS-CoV non-S structural proteins (i.e. N and M)\nrN protein N/A Freund’s I.P. BALB/c mice Elicits SARS-CoV N-specific Abs (IgG (1:1.8 × 103), IgG1, and IgG2a) in mice Induces cellular immune responses with up-regulated IFN-γ and IL-10 cytokines in mice N/A Zheng et al., 2009\nrN protein N/A Montanide + CpG; Freund’s S.C. BALB/c mice Elicits SARS-CoV N-specific Abs (IgG) in mice Induces SARS-CoV N-specific cellular immune responses (IFN- γ) in mice N/A Liu et al., 2006\nM1-31 and M132-161 peptides Bind to sera from SARS patients or immunized mice and rabbits Freund’s I.D. BALB/c mice; NZW rabbits Induce SARS-CoV M-specific Abs (IgG) in rabbits N/A N/A He et al., 2005b"}

    LitCovid-PD-CHEBI

    {"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T121","span":{"begin":199,"end":206},"obj":"Chemical"},{"id":"T122","span":{"begin":207,"end":209},"obj":"Chemical"},{"id":"T123","span":{"begin":221,"end":229},"obj":"Chemical"},{"id":"T124","span":{"begin":266,"end":268},"obj":"Chemical"},{"id":"T125","span":{"begin":488,"end":496},"obj":"Chemical"},{"id":"T126","span":{"begin":512,"end":516},"obj":"Chemical"},{"id":"T127","span":{"begin":827,"end":829},"obj":"Chemical"},{"id":"T128","span":{"begin":852,"end":859},"obj":"Chemical"},{"id":"T129","span":{"begin":1313,"end":1320},"obj":"Chemical"},{"id":"T130","span":{"begin":1328,"end":1335},"obj":"Chemical"},{"id":"T131","span":{"begin":1786,"end":1794},"obj":"Chemical"},{"id":"T132","span":{"begin":2185,"end":2187},"obj":"Chemical"},{"id":"T134","span":{"begin":2191,"end":2193},"obj":"Chemical"},{"id":"T136","span":{"begin":2197,"end":2199},"obj":"Chemical"},{"id":"T138","span":{"begin":2494,"end":2501},"obj":"Chemical"},{"id":"T139","span":{"begin":2925,"end":2932},"obj":"Chemical"},{"id":"T140","span":{"begin":3242,"end":3249},"obj":"Chemical"},{"id":"T141","span":{"begin":3277,"end":3285},"obj":"Chemical"},{"id":"T142","span":{"begin":3301,"end":3305},"obj":"Chemical"},{"id":"T143","span":{"begin":3615,"end":3617},"obj":"Chemical"},{"id":"T144","span":{"begin":3631,"end":3633},"obj":"Chemical"},{"id":"T145","span":{"begin":3634,"end":3641},"obj":"Chemical"},{"id":"T146","span":{"begin":3694,"end":3696},"obj":"Chemical"},{"id":"T147","span":{"begin":3785,"end":3787},"obj":"Chemical"},{"id":"T148","span":{"begin":3834,"end":3836},"obj":"Chemical"},{"id":"T150","span":{"begin":3854,"end":3857},"obj":"Chemical"},{"id":"T151","span":{"begin":3923,"end":3931},"obj":"Chemical"},{"id":"T152","span":{"begin":3950,"end":3957},"obj":"Chemical"},{"id":"T153","span":{"begin":4133,"end":4135},"obj":"Chemical"},{"id":"T155","span":{"begin":4185,"end":4192},"obj":"Chemical"},{"id":"T156","span":{"begin":4386,"end":4388},"obj":"Chemical"},{"id":"T160","span":{"begin":4405,"end":4413},"obj":"Chemical"}],"attributes":[{"id":"A121","pred":"chebi_id","subj":"T121","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A122","pred":"chebi_id","subj":"T122","obj":"http://purl.obolibrary.org/obo/CHEBI_91150"},{"id":"A123","pred":"chebi_id","subj":"T123","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A124","pred":"chebi_id","subj":"T124","obj":"http://purl.obolibrary.org/obo/CHEBI_29387"},{"id":"A125","pred":"chebi_id","subj":"T125","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A126","pred":"chebi_id","subj":"T126","obj":"http://purl.obolibrary.org/obo/CHEBI_29287"},{"id":"A127","pred":"chebi_id","subj":"T127","obj":"http://purl.obolibrary.org/obo/CHEBI_30145"},{"id":"A128","pred":"chebi_id","subj":"T128","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A129","pred":"chebi_id","subj":"T129","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A130","pred":"chebi_id","subj":"T130","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A131","pred":"chebi_id","subj":"T131","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A132","pred":"chebi_id","subj":"T132","obj":"http://purl.obolibrary.org/obo/CHEBI_63895"},{"id":"A133","pred":"chebi_id","subj":"T132","obj":"http://purl.obolibrary.org/obo/CHEBI_74072"},{"id":"A134","pred":"chebi_id","subj":"T134","obj":"http://purl.obolibrary.org/obo/CHEBI_63895"},{"id":"A135","pred":"chebi_id","subj":"T134","obj":"http://purl.obolibrary.org/obo/CHEBI_74072"},{"id":"A136","pred":"chebi_id","subj":"T136","obj":"http://purl.obolibrary.org/obo/CHEBI_63895"},{"id":"A137","pred":"chebi_id","subj":"T136","obj":"http://purl.obolibrary.org/obo/CHEBI_74072"},{"id":"A138","pred":"chebi_id","subj":"T138","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A139","pred":"chebi_id","subj":"T139","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A140","pred":"chebi_id","subj":"T140","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A141","pred":"chebi_id","subj":"T141","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A142","pred":"chebi_id","subj":"T142","obj":"http://purl.obolibrary.org/obo/CHEBI_29287"},{"id":"A143","pred":"chebi_id","subj":"T143","obj":"http://purl.obolibrary.org/obo/CHEBI_30145"},{"id":"A144","pred":"chebi_id","subj":"T144","obj":"http://purl.obolibrary.org/obo/CHEBI_29387"},{"id":"A145","pred":"chebi_id","subj":"T145","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A146","pred":"chebi_id","subj":"T146","obj":"http://purl.obolibrary.org/obo/CHEBI_29387"},{"id":"A147","pred":"chebi_id","subj":"T147","obj":"http://purl.obolibrary.org/obo/CHEBI_29387"},{"id":"A148","pred":"chebi_id","subj":"T148","obj":"http://purl.obolibrary.org/obo/CHEBI_63895"},{"id":"A149","pred":"chebi_id","subj":"T148","obj":"http://purl.obolibrary.org/obo/CHEBI_74072"},{"id":"A150","pred":"chebi_id","subj":"T150","obj":"http://purl.obolibrary.org/obo/CHEBI_16750"},{"id":"A151","pred":"chebi_id","subj":"T151","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A152","pred":"chebi_id","subj":"T152","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A153","pred":"chebi_id","subj":"T153","obj":"http://purl.obolibrary.org/obo/CHEBI_63895"},{"id":"A154","pred":"chebi_id","subj":"T153","obj":"http://purl.obolibrary.org/obo/CHEBI_74072"},{"id":"A155","pred":"chebi_id","subj":"T155","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A156","pred":"chebi_id","subj":"T156","obj":"http://purl.obolibrary.org/obo/CHEBI_51079"},{"id":"A157","pred":"chebi_id","subj":"T156","obj":"http://purl.obolibrary.org/obo/CHEBI_139019"},{"id":"A158","pred":"chebi_id","subj":"T156","obj":"http://purl.obolibrary.org/obo/CHEBI_140152"},{"id":"A159","pred":"chebi_id","subj":"T156","obj":"http://purl.obolibrary.org/obo/CHEBI_34826"},{"id":"A160","pred":"chebi_id","subj":"T160","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"}],"text":"Name Antigenicity and functionality Adjuvant Route Animal models Antibody response Cellular immune response Protection References\nSubunit vaccines based on SARS-CoV full-length or trimeric S protein\nFL-S and EC-S proteins Bind to SARS-CoV S1, NTD, RBD, and S2-specific mAbs MPL + TDM S.C. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1: 2 × 105), neutralizing (\u003e 1:2.4 × 104) pseudotyped SARS-CoV (Tor2, GD03, and SZ3 strains) N/A N/A He et al., 2006a\nS andS-foldon proteins N/A TiterMax Gold; Alum Hydro+MPL S.C. or I.M. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1:104) in mice, neutralizing (∼2.4 × 102 for S; ∼1:7 × 102 for S-foldon) live SARS-CoV (Urbani strain) N/A Protect vaccinated mice from challenge of SARS-CoV (Urbani strain, 105 TCID50) with undetectable viral load in lungs Li et al., 2013\ntriSpike protein N/A Alum hydro I.P. or S.C. BALB/c mice; Hamsters Elicits SARS-CoV S-specific mucosal and serum Abs (IgA and IgG) in mice and hamsters, blocking S-ACE2 receptor binding and neutralizing live SARS-CoV (HKU-39849 strain); induces ADE N/A Protects vaccinated hamsters from challenge of SARS-CoV (Urbani strain, 103 TCID50) with undetectable or reduced viral load in lungs Kam et al., 2007; Jaume et al., 2012\nSubunit vaccines based on SARS-CoV RBD protein\nRBD-Fc protein N/A Freund’s I.D. or I.M. BALB/c mice; Rabbits Elicits SARS-CoV S/RBD-specific Abs (IgG) in mice and rabbits, neutralizing pseudotyped (rabbits: ≥ 7.3 × 104) and live (mice: 1:4 × 103; rabbits: \u003e 1:1.5 × 104) SARS-CoV (BJ01 strain) N/A Protects majority (4/5) of vaccinated mice from challenge of SARS-CoV (BJ01 strain, 106 TCID50), with one mouse showing mild alveolar damage in lungs He et al., 2004; Du et al., 2007\nRBD193-CHO; RBD219-CHO proteins Binds to SARS-CoV RBD-specific mAbs (neutralizing 24H8, 31H12, 35B5, 33G4, 19B2; non-neutralizing 17H9) Freund’s S.C. BALB/c mice Elicit SARS-CoV RBD-specific Abs, neutralizing pseudotyped (\u003c 1:104 for RBD193-CHO; 1:5.8 × 104 for RBD219-CHO) and live (\u003c 1:103 for RBD193-CHO; 1:103 for RBD219-CHO) SARS-CoV (GZ50 strain) Induce SARS-CoV RBD-specific cellular immune responses (IFN-γ, IL-2, IL-4, IL-10) in mice Protect all (for RBD219-CHO) or majority (3/5, for RBD219-CHO) of vaccinated mice from challenge of SARS-CoV (GZ50 strain, 100 TCID50 for RBD193-CHO; 5 × 105 TCID50 for RBD219-CHO) with undetectable viral RNA or no, to reduced, viral load in lungs Du et al., 2009c, 2010\nRBD-293T protein Binds to SARS-CoV RBD-specific mAbs (neutralizing 24H8, 31H12, 35B5, 33G4, 19B2; non-neutralizing 17H9) SAS S.C. BALB/c mice Elicits SARS-CoV RBD-specific Abs (IgG), neutralizing pseudotyped (1:6.9 × 105) and live (1:1.6 × 103) SARS-CoV (GZ50 strain) N/A Protects all vaccinated mice from challenge of SARS-CoV (GZ50 strain, 100 TCID50) with undetectable viral RNA and viral load in lungs Du et al., 2009b\nS318-510 protein N/A Alum; Alum + CpG S.C. 129S6/SvEv mice Elicits SARS-CoV-specific Abs (IgG, IgG1, and IgG2a) in mice. Reduces neutralization after removing glycosylation Induces SARS-CoV S-specific cellular immune responses (IFN-γ) in mice N/A Zakhartchouk et al., 2007\nSubunit vaccines based on non-RBD SARS-CoV S protein fragments\nS1 and S1-foldon proteins N/A TiterMax Gold; Alum Hydro + MPL S.C. or I.M. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1:104) in mice, neutralizing (1:1.7 × 102 for S1; 1:90 for S1-foldon) live SARS-CoV (Urbani strain) N/A Protect vaccinated mice from challenge of SARS-CoV (Urbani strain, 105 TCID50) with undetectable viral load in lungs Li et al., 2013\nS2 protein N/A Freund’s S.C. BALB/c mice Elicits SARS-CoV S2-specific Abs (IgG, 1:1.6 × 103) in mice with no neutralizing activity Induces SARS-CoV S2-specific cellular immune responses (IFN-γ and IL-4) in mice N/A Guo et al., 2005\nSubunit vaccines based on SARS-CoV non-S structural proteins (i.e. N and M)\nrN protein N/A Freund’s I.P. BALB/c mice Elicits SARS-CoV N-specific Abs (IgG (1:1.8 × 103), IgG1, and IgG2a) in mice Induces cellular immune responses with up-regulated IFN-γ and IL-10 cytokines in mice N/A Zheng et al., 2009\nrN protein N/A Montanide + CpG; Freund’s S.C. BALB/c mice Elicits SARS-CoV N-specific Abs (IgG) in mice Induces SARS-CoV N-specific cellular immune responses (IFN- γ) in mice N/A Liu et al., 2006\nM1-31 and M132-161 peptides Bind to sera from SARS patients or immunized mice and rabbits Freund’s I.D. BALB/c mice; NZW rabbits Induce SARS-CoV M-specific Abs (IgG) in rabbits N/A N/A He et al., 2005b"}

    LitCovid-PD-GO-BP

    {"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T46","span":{"begin":89,"end":113},"obj":"http://purl.obolibrary.org/obo/GO_0002456"},{"id":"T47","span":{"begin":89,"end":113},"obj":"http://purl.obolibrary.org/obo/GO_0002449"},{"id":"T48","span":{"begin":89,"end":113},"obj":"http://purl.obolibrary.org/obo/GO_0002443"},{"id":"T49","span":{"begin":98,"end":113},"obj":"http://purl.obolibrary.org/obo/GO_0006955"},{"id":"T50","span":{"begin":2151,"end":2176},"obj":"http://purl.obolibrary.org/obo/GO_0002456"},{"id":"T51","span":{"begin":2151,"end":2176},"obj":"http://purl.obolibrary.org/obo/GO_0002449"},{"id":"T52","span":{"begin":2151,"end":2176},"obj":"http://purl.obolibrary.org/obo/GO_0002443"},{"id":"T53","span":{"begin":3080,"end":3093},"obj":"http://purl.obolibrary.org/obo/GO_0070085"},{"id":"T54","span":{"begin":3123,"end":3148},"obj":"http://purl.obolibrary.org/obo/GO_0002456"},{"id":"T55","span":{"begin":3123,"end":3148},"obj":"http://purl.obolibrary.org/obo/GO_0002449"},{"id":"T56","span":{"begin":3123,"end":3148},"obj":"http://purl.obolibrary.org/obo/GO_0002443"},{"id":"T57","span":{"begin":3797,"end":3822},"obj":"http://purl.obolibrary.org/obo/GO_0002456"},{"id":"T58","span":{"begin":3797,"end":3822},"obj":"http://purl.obolibrary.org/obo/GO_0002449"},{"id":"T59","span":{"begin":3797,"end":3822},"obj":"http://purl.obolibrary.org/obo/GO_0002443"},{"id":"T60","span":{"begin":4079,"end":4104},"obj":"http://purl.obolibrary.org/obo/GO_0002456"},{"id":"T61","span":{"begin":4079,"end":4104},"obj":"http://purl.obolibrary.org/obo/GO_0002449"},{"id":"T62","span":{"begin":4079,"end":4104},"obj":"http://purl.obolibrary.org/obo/GO_0002443"},{"id":"T63","span":{"begin":4320,"end":4345},"obj":"http://purl.obolibrary.org/obo/GO_0002456"},{"id":"T64","span":{"begin":4320,"end":4345},"obj":"http://purl.obolibrary.org/obo/GO_0002449"},{"id":"T65","span":{"begin":4320,"end":4345},"obj":"http://purl.obolibrary.org/obo/GO_0002443"}],"text":"Name Antigenicity and functionality Adjuvant Route Animal models Antibody response Cellular immune response Protection References\nSubunit vaccines based on SARS-CoV full-length or trimeric S protein\nFL-S and EC-S proteins Bind to SARS-CoV S1, NTD, RBD, and S2-specific mAbs MPL + TDM S.C. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1: 2 × 105), neutralizing (\u003e 1:2.4 × 104) pseudotyped SARS-CoV (Tor2, GD03, and SZ3 strains) N/A N/A He et al., 2006a\nS andS-foldon proteins N/A TiterMax Gold; Alum Hydro+MPL S.C. or I.M. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1:104) in mice, neutralizing (∼2.4 × 102 for S; ∼1:7 × 102 for S-foldon) live SARS-CoV (Urbani strain) N/A Protect vaccinated mice from challenge of SARS-CoV (Urbani strain, 105 TCID50) with undetectable viral load in lungs Li et al., 2013\ntriSpike protein N/A Alum hydro I.P. or S.C. BALB/c mice; Hamsters Elicits SARS-CoV S-specific mucosal and serum Abs (IgA and IgG) in mice and hamsters, blocking S-ACE2 receptor binding and neutralizing live SARS-CoV (HKU-39849 strain); induces ADE N/A Protects vaccinated hamsters from challenge of SARS-CoV (Urbani strain, 103 TCID50) with undetectable or reduced viral load in lungs Kam et al., 2007; Jaume et al., 2012\nSubunit vaccines based on SARS-CoV RBD protein\nRBD-Fc protein N/A Freund’s I.D. or I.M. BALB/c mice; Rabbits Elicits SARS-CoV S/RBD-specific Abs (IgG) in mice and rabbits, neutralizing pseudotyped (rabbits: ≥ 7.3 × 104) and live (mice: 1:4 × 103; rabbits: \u003e 1:1.5 × 104) SARS-CoV (BJ01 strain) N/A Protects majority (4/5) of vaccinated mice from challenge of SARS-CoV (BJ01 strain, 106 TCID50), with one mouse showing mild alveolar damage in lungs He et al., 2004; Du et al., 2007\nRBD193-CHO; RBD219-CHO proteins Binds to SARS-CoV RBD-specific mAbs (neutralizing 24H8, 31H12, 35B5, 33G4, 19B2; non-neutralizing 17H9) Freund’s S.C. BALB/c mice Elicit SARS-CoV RBD-specific Abs, neutralizing pseudotyped (\u003c 1:104 for RBD193-CHO; 1:5.8 × 104 for RBD219-CHO) and live (\u003c 1:103 for RBD193-CHO; 1:103 for RBD219-CHO) SARS-CoV (GZ50 strain) Induce SARS-CoV RBD-specific cellular immune responses (IFN-γ, IL-2, IL-4, IL-10) in mice Protect all (for RBD219-CHO) or majority (3/5, for RBD219-CHO) of vaccinated mice from challenge of SARS-CoV (GZ50 strain, 100 TCID50 for RBD193-CHO; 5 × 105 TCID50 for RBD219-CHO) with undetectable viral RNA or no, to reduced, viral load in lungs Du et al., 2009c, 2010\nRBD-293T protein Binds to SARS-CoV RBD-specific mAbs (neutralizing 24H8, 31H12, 35B5, 33G4, 19B2; non-neutralizing 17H9) SAS S.C. BALB/c mice Elicits SARS-CoV RBD-specific Abs (IgG), neutralizing pseudotyped (1:6.9 × 105) and live (1:1.6 × 103) SARS-CoV (GZ50 strain) N/A Protects all vaccinated mice from challenge of SARS-CoV (GZ50 strain, 100 TCID50) with undetectable viral RNA and viral load in lungs Du et al., 2009b\nS318-510 protein N/A Alum; Alum + CpG S.C. 129S6/SvEv mice Elicits SARS-CoV-specific Abs (IgG, IgG1, and IgG2a) in mice. Reduces neutralization after removing glycosylation Induces SARS-CoV S-specific cellular immune responses (IFN-γ) in mice N/A Zakhartchouk et al., 2007\nSubunit vaccines based on non-RBD SARS-CoV S protein fragments\nS1 and S1-foldon proteins N/A TiterMax Gold; Alum Hydro + MPL S.C. or I.M. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1:104) in mice, neutralizing (1:1.7 × 102 for S1; 1:90 for S1-foldon) live SARS-CoV (Urbani strain) N/A Protect vaccinated mice from challenge of SARS-CoV (Urbani strain, 105 TCID50) with undetectable viral load in lungs Li et al., 2013\nS2 protein N/A Freund’s S.C. BALB/c mice Elicits SARS-CoV S2-specific Abs (IgG, 1:1.6 × 103) in mice with no neutralizing activity Induces SARS-CoV S2-specific cellular immune responses (IFN-γ and IL-4) in mice N/A Guo et al., 2005\nSubunit vaccines based on SARS-CoV non-S structural proteins (i.e. N and M)\nrN protein N/A Freund’s I.P. BALB/c mice Elicits SARS-CoV N-specific Abs (IgG (1:1.8 × 103), IgG1, and IgG2a) in mice Induces cellular immune responses with up-regulated IFN-γ and IL-10 cytokines in mice N/A Zheng et al., 2009\nrN protein N/A Montanide + CpG; Freund’s S.C. BALB/c mice Elicits SARS-CoV N-specific Abs (IgG) in mice Induces SARS-CoV N-specific cellular immune responses (IFN- γ) in mice N/A Liu et al., 2006\nM1-31 and M132-161 peptides Bind to sera from SARS patients or immunized mice and rabbits Freund’s I.D. BALB/c mice; NZW rabbits Induce SARS-CoV M-specific Abs (IgG) in rabbits N/A N/A He et al., 2005b"}

    2_test

    {"project":"2_test","denotations":[{"id":"32265848-23573979-36511114","span":{"begin":838,"end":842},"obj":"23573979"},{"id":"32265848-17049691-36511115","span":{"begin":1249,"end":1253},"obj":"17049691"},{"id":"32265848-22311359-36511116","span":{"begin":1269,"end":1273},"obj":"22311359"},{"id":"32265848-15474494-36511117","span":{"begin":1741,"end":1745},"obj":"15474494"},{"id":"32265848-17092615-36511118","span":{"begin":1758,"end":1762},"obj":"17092615"},{"id":"32265848-20374001-36511120","span":{"begin":2480,"end":2484},"obj":"20374001"},{"id":"32265848-16919855-36511122","span":{"begin":3192,"end":3196},"obj":"16919855"},{"id":"32265848-23573979-36511123","span":{"begin":3626,"end":3630},"obj":"23573979"},{"id":"32265848-16101349-36511124","span":{"begin":3866,"end":3870},"obj":"16101349"},{"id":"32265848-19523911-36511125","span":{"begin":4177,"end":4181},"obj":"19523911"},{"id":"32265848-16494977-36511126","span":{"begin":4381,"end":4385},"obj":"16494977"}],"text":"Name Antigenicity and functionality Adjuvant Route Animal models Antibody response Cellular immune response Protection References\nSubunit vaccines based on SARS-CoV full-length or trimeric S protein\nFL-S and EC-S proteins Bind to SARS-CoV S1, NTD, RBD, and S2-specific mAbs MPL + TDM S.C. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1: 2 × 105), neutralizing (\u003e 1:2.4 × 104) pseudotyped SARS-CoV (Tor2, GD03, and SZ3 strains) N/A N/A He et al., 2006a\nS andS-foldon proteins N/A TiterMax Gold; Alum Hydro+MPL S.C. or I.M. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1:104) in mice, neutralizing (∼2.4 × 102 for S; ∼1:7 × 102 for S-foldon) live SARS-CoV (Urbani strain) N/A Protect vaccinated mice from challenge of SARS-CoV (Urbani strain, 105 TCID50) with undetectable viral load in lungs Li et al., 2013\ntriSpike protein N/A Alum hydro I.P. or S.C. BALB/c mice; Hamsters Elicits SARS-CoV S-specific mucosal and serum Abs (IgA and IgG) in mice and hamsters, blocking S-ACE2 receptor binding and neutralizing live SARS-CoV (HKU-39849 strain); induces ADE N/A Protects vaccinated hamsters from challenge of SARS-CoV (Urbani strain, 103 TCID50) with undetectable or reduced viral load in lungs Kam et al., 2007; Jaume et al., 2012\nSubunit vaccines based on SARS-CoV RBD protein\nRBD-Fc protein N/A Freund’s I.D. or I.M. BALB/c mice; Rabbits Elicits SARS-CoV S/RBD-specific Abs (IgG) in mice and rabbits, neutralizing pseudotyped (rabbits: ≥ 7.3 × 104) and live (mice: 1:4 × 103; rabbits: \u003e 1:1.5 × 104) SARS-CoV (BJ01 strain) N/A Protects majority (4/5) of vaccinated mice from challenge of SARS-CoV (BJ01 strain, 106 TCID50), with one mouse showing mild alveolar damage in lungs He et al., 2004; Du et al., 2007\nRBD193-CHO; RBD219-CHO proteins Binds to SARS-CoV RBD-specific mAbs (neutralizing 24H8, 31H12, 35B5, 33G4, 19B2; non-neutralizing 17H9) Freund’s S.C. BALB/c mice Elicit SARS-CoV RBD-specific Abs, neutralizing pseudotyped (\u003c 1:104 for RBD193-CHO; 1:5.8 × 104 for RBD219-CHO) and live (\u003c 1:103 for RBD193-CHO; 1:103 for RBD219-CHO) SARS-CoV (GZ50 strain) Induce SARS-CoV RBD-specific cellular immune responses (IFN-γ, IL-2, IL-4, IL-10) in mice Protect all (for RBD219-CHO) or majority (3/5, for RBD219-CHO) of vaccinated mice from challenge of SARS-CoV (GZ50 strain, 100 TCID50 for RBD193-CHO; 5 × 105 TCID50 for RBD219-CHO) with undetectable viral RNA or no, to reduced, viral load in lungs Du et al., 2009c, 2010\nRBD-293T protein Binds to SARS-CoV RBD-specific mAbs (neutralizing 24H8, 31H12, 35B5, 33G4, 19B2; non-neutralizing 17H9) SAS S.C. BALB/c mice Elicits SARS-CoV RBD-specific Abs (IgG), neutralizing pseudotyped (1:6.9 × 105) and live (1:1.6 × 103) SARS-CoV (GZ50 strain) N/A Protects all vaccinated mice from challenge of SARS-CoV (GZ50 strain, 100 TCID50) with undetectable viral RNA and viral load in lungs Du et al., 2009b\nS318-510 protein N/A Alum; Alum + CpG S.C. 129S6/SvEv mice Elicits SARS-CoV-specific Abs (IgG, IgG1, and IgG2a) in mice. Reduces neutralization after removing glycosylation Induces SARS-CoV S-specific cellular immune responses (IFN-γ) in mice N/A Zakhartchouk et al., 2007\nSubunit vaccines based on non-RBD SARS-CoV S protein fragments\nS1 and S1-foldon proteins N/A TiterMax Gold; Alum Hydro + MPL S.C. or I.M. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1:104) in mice, neutralizing (1:1.7 × 102 for S1; 1:90 for S1-foldon) live SARS-CoV (Urbani strain) N/A Protect vaccinated mice from challenge of SARS-CoV (Urbani strain, 105 TCID50) with undetectable viral load in lungs Li et al., 2013\nS2 protein N/A Freund’s S.C. BALB/c mice Elicits SARS-CoV S2-specific Abs (IgG, 1:1.6 × 103) in mice with no neutralizing activity Induces SARS-CoV S2-specific cellular immune responses (IFN-γ and IL-4) in mice N/A Guo et al., 2005\nSubunit vaccines based on SARS-CoV non-S structural proteins (i.e. N and M)\nrN protein N/A Freund’s I.P. BALB/c mice Elicits SARS-CoV N-specific Abs (IgG (1:1.8 × 103), IgG1, and IgG2a) in mice Induces cellular immune responses with up-regulated IFN-γ and IL-10 cytokines in mice N/A Zheng et al., 2009\nrN protein N/A Montanide + CpG; Freund’s S.C. BALB/c mice Elicits SARS-CoV N-specific Abs (IgG) in mice Induces SARS-CoV N-specific cellular immune responses (IFN- γ) in mice N/A Liu et al., 2006\nM1-31 and M132-161 peptides Bind to sera from SARS patients or immunized mice and rabbits Freund’s I.D. BALB/c mice; NZW rabbits Induce SARS-CoV M-specific Abs (IgG) in rabbits N/A N/A He et al., 2005b"}

    LitCovid-sentences

    {"project":"LitCovid-sentences","denotations":[{"id":"T158","span":{"begin":0,"end":137},"obj":"Sentence"},{"id":"T159","span":{"begin":138,"end":206},"obj":"Sentence"},{"id":"T160","span":{"begin":207,"end":299},"obj":"Sentence"},{"id":"T161","span":{"begin":301,"end":355},"obj":"Sentence"},{"id":"T162","span":{"begin":356,"end":473},"obj":"Sentence"},{"id":"T163","span":{"begin":474,"end":546},"obj":"Sentence"},{"id":"T164","span":{"begin":548,"end":842},"obj":"Sentence"},{"id":"T165","span":{"begin":843,"end":890},"obj":"Sentence"},{"id":"T166","span":{"begin":892,"end":1273},"obj":"Sentence"},{"id":"T167","span":{"begin":1274,"end":1320},"obj":"Sentence"},{"id":"T168","span":{"begin":1321,"end":1364},"obj":"Sentence"},{"id":"T169","span":{"begin":1366,"end":1514},"obj":"Sentence"},{"id":"T170","span":{"begin":1515,"end":1762},"obj":"Sentence"},{"id":"T171","span":{"begin":1763,"end":1915},"obj":"Sentence"},{"id":"T172","span":{"begin":1917,"end":2484},"obj":"Sentence"},{"id":"T173","span":{"begin":2485,"end":2617},"obj":"Sentence"},{"id":"T174","span":{"begin":2619,"end":2915},"obj":"Sentence"},{"id":"T175","span":{"begin":2916,"end":2961},"obj":"Sentence"},{"id":"T176","span":{"begin":2963,"end":3041},"obj":"Sentence"},{"id":"T177","span":{"begin":3042,"end":3196},"obj":"Sentence"},{"id":"T178","span":{"begin":3197,"end":3259},"obj":"Sentence"},{"id":"T179","span":{"begin":3260,"end":3337},"obj":"Sentence"},{"id":"T180","span":{"begin":3339,"end":3630},"obj":"Sentence"},{"id":"T181","span":{"begin":3631,"end":3662},"obj":"Sentence"},{"id":"T182","span":{"begin":3664,"end":3870},"obj":"Sentence"},{"id":"T183","span":{"begin":3871,"end":3946},"obj":"Sentence"},{"id":"T184","span":{"begin":3947,"end":3978},"obj":"Sentence"},{"id":"T185","span":{"begin":3980,"end":4181},"obj":"Sentence"},{"id":"T186","span":{"begin":4182,"end":4230},"obj":"Sentence"},{"id":"T187","span":{"begin":4232,"end":4385},"obj":"Sentence"},{"id":"T188","span":{"begin":4386,"end":4492},"obj":"Sentence"},{"id":"T189","span":{"begin":4494,"end":4595},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Name Antigenicity and functionality Adjuvant Route Animal models Antibody response Cellular immune response Protection References\nSubunit vaccines based on SARS-CoV full-length or trimeric S protein\nFL-S and EC-S proteins Bind to SARS-CoV S1, NTD, RBD, and S2-specific mAbs MPL + TDM S.C. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1: 2 × 105), neutralizing (\u003e 1:2.4 × 104) pseudotyped SARS-CoV (Tor2, GD03, and SZ3 strains) N/A N/A He et al., 2006a\nS andS-foldon proteins N/A TiterMax Gold; Alum Hydro+MPL S.C. or I.M. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1:104) in mice, neutralizing (∼2.4 × 102 for S; ∼1:7 × 102 for S-foldon) live SARS-CoV (Urbani strain) N/A Protect vaccinated mice from challenge of SARS-CoV (Urbani strain, 105 TCID50) with undetectable viral load in lungs Li et al., 2013\ntriSpike protein N/A Alum hydro I.P. or S.C. BALB/c mice; Hamsters Elicits SARS-CoV S-specific mucosal and serum Abs (IgA and IgG) in mice and hamsters, blocking S-ACE2 receptor binding and neutralizing live SARS-CoV (HKU-39849 strain); induces ADE N/A Protects vaccinated hamsters from challenge of SARS-CoV (Urbani strain, 103 TCID50) with undetectable or reduced viral load in lungs Kam et al., 2007; Jaume et al., 2012\nSubunit vaccines based on SARS-CoV RBD protein\nRBD-Fc protein N/A Freund’s I.D. or I.M. BALB/c mice; Rabbits Elicits SARS-CoV S/RBD-specific Abs (IgG) in mice and rabbits, neutralizing pseudotyped (rabbits: ≥ 7.3 × 104) and live (mice: 1:4 × 103; rabbits: \u003e 1:1.5 × 104) SARS-CoV (BJ01 strain) N/A Protects majority (4/5) of vaccinated mice from challenge of SARS-CoV (BJ01 strain, 106 TCID50), with one mouse showing mild alveolar damage in lungs He et al., 2004; Du et al., 2007\nRBD193-CHO; RBD219-CHO proteins Binds to SARS-CoV RBD-specific mAbs (neutralizing 24H8, 31H12, 35B5, 33G4, 19B2; non-neutralizing 17H9) Freund’s S.C. BALB/c mice Elicit SARS-CoV RBD-specific Abs, neutralizing pseudotyped (\u003c 1:104 for RBD193-CHO; 1:5.8 × 104 for RBD219-CHO) and live (\u003c 1:103 for RBD193-CHO; 1:103 for RBD219-CHO) SARS-CoV (GZ50 strain) Induce SARS-CoV RBD-specific cellular immune responses (IFN-γ, IL-2, IL-4, IL-10) in mice Protect all (for RBD219-CHO) or majority (3/5, for RBD219-CHO) of vaccinated mice from challenge of SARS-CoV (GZ50 strain, 100 TCID50 for RBD193-CHO; 5 × 105 TCID50 for RBD219-CHO) with undetectable viral RNA or no, to reduced, viral load in lungs Du et al., 2009c, 2010\nRBD-293T protein Binds to SARS-CoV RBD-specific mAbs (neutralizing 24H8, 31H12, 35B5, 33G4, 19B2; non-neutralizing 17H9) SAS S.C. BALB/c mice Elicits SARS-CoV RBD-specific Abs (IgG), neutralizing pseudotyped (1:6.9 × 105) and live (1:1.6 × 103) SARS-CoV (GZ50 strain) N/A Protects all vaccinated mice from challenge of SARS-CoV (GZ50 strain, 100 TCID50) with undetectable viral RNA and viral load in lungs Du et al., 2009b\nS318-510 protein N/A Alum; Alum + CpG S.C. 129S6/SvEv mice Elicits SARS-CoV-specific Abs (IgG, IgG1, and IgG2a) in mice. Reduces neutralization after removing glycosylation Induces SARS-CoV S-specific cellular immune responses (IFN-γ) in mice N/A Zakhartchouk et al., 2007\nSubunit vaccines based on non-RBD SARS-CoV S protein fragments\nS1 and S1-foldon proteins N/A TiterMax Gold; Alum Hydro + MPL S.C. or I.M. BALB/c mice Elicit SARS-CoV S-specific Abs (IgG, \u003e 1:104) in mice, neutralizing (1:1.7 × 102 for S1; 1:90 for S1-foldon) live SARS-CoV (Urbani strain) N/A Protect vaccinated mice from challenge of SARS-CoV (Urbani strain, 105 TCID50) with undetectable viral load in lungs Li et al., 2013\nS2 protein N/A Freund’s S.C. BALB/c mice Elicits SARS-CoV S2-specific Abs (IgG, 1:1.6 × 103) in mice with no neutralizing activity Induces SARS-CoV S2-specific cellular immune responses (IFN-γ and IL-4) in mice N/A Guo et al., 2005\nSubunit vaccines based on SARS-CoV non-S structural proteins (i.e. N and M)\nrN protein N/A Freund’s I.P. BALB/c mice Elicits SARS-CoV N-specific Abs (IgG (1:1.8 × 103), IgG1, and IgG2a) in mice Induces cellular immune responses with up-regulated IFN-γ and IL-10 cytokines in mice N/A Zheng et al., 2009\nrN protein N/A Montanide + CpG; Freund’s S.C. BALB/c mice Elicits SARS-CoV N-specific Abs (IgG) in mice Induces SARS-CoV N-specific cellular immune responses (IFN- γ) in mice N/A Liu et al., 2006\nM1-31 and M132-161 peptides Bind to sera from SARS patients or immunized mice and rabbits Freund’s I.D. BALB/c mice; NZW rabbits Induce SARS-CoV M-specific Abs (IgG) in rabbits N/A N/A He et al., 2005b"}