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PMC:7105881 / 2149-3753 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
106 0-13 Species denotes Coronaviruses Tax:11118
107 15-19 Species denotes CoVs Tax:11118
108 78-91 Species denotes Coronaviridae Tax:11118
109 314-317 Species denotes CoV Tax:11118
110 320-335 Species denotes betacoronavirus Tax:694002
111 337-345 Species denotes beta-CoV Tax:694002
112 372-375 Species denotes CoV Tax:11118
113 406-409 Species denotes CoV Tax:11118
114 448-452 Species denotes CoVs Tax:11118
115 508-512 Species denotes pigs Tax:9823
116 514-518 Species denotes cats Tax:9685
117 520-524 Species denotes mice Tax:10090
118 530-536 Species denotes humans Tax:9606
119 695-699 Species denotes CoVs Tax:11118
120 836-840 Species denotes CoVs Tax:11118
121 933-937 Species denotes CoVs Tax:11118
122 990-996 Species denotes humans Tax:9606
123 1008-1030 Species denotes human coronavirus 229E Tax:11137
124 1032-1041 Species denotes HCoV-229E Tax:11137
125 1047-1069 Species denotes human coronavirus NL63 Tax:277944
126 1071-1080 Species denotes HCoV-NL63 Tax:277944
127 1105-1109 Species denotes CoVs Tax:11118
128 1168-1190 Species denotes human coronavirus OC43 Tax:31631
129 1192-1201 Species denotes HCoV-OC43 Tax:31631
130 1204-1226 Species denotes human coronavirus HKU1 Tax:290028
131 1228-1237 Species denotes HCoV-HKU1 Tax:290028
132 1240-1285 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
133 1287-1295 Species denotes SARS-CoV Tax:694009
134 1298-1353 Species denotes Middle East respiratory syndrome coronavirus (MERS-CoV) Tax:1335626
135 1377-1400 Species denotes coronavirus (2019-nCoV) Tax:2697049
136 1429-1433 Species denotes CoVs Tax:11118
137 910-921 Disease denotes common cold MESH:D003139

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T12 910-921 Disease denotes common cold http://purl.obolibrary.org/obo/MONDO_0005709
T13 1240-1273 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T14 1287-1295 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T16 150-155 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T17 213-220 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Viruses
T18 425-429 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T19 502-506 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T20 530-536 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T21 561-563 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T22 561-563 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T23 990-996 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T24 1008-1013 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T25 1047-1052 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T26 1168-1173 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T27 1204-1209 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T5 308-313 Chemical denotes alpha http://purl.obolibrary.org/obo/CHEBI_30216
T6 337-341 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T7 366-371 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T8 443-447 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T9 561-563 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T10 1099-1104 Chemical denotes alpha http://purl.obolibrary.org/obo/CHEBI_30216
T11 1424-1428 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545

2_test

Id Subject Object Predicate Lexical cue
32265848-29754305-36510941 425-429 29754305 denotes 2018
32265848-1318752-36510942 555-559 1318752 denotes 1992
32265848-15681402-36510944 592-596 15681402 denotes 2005
32265848-24184128-36510945 614-618 24184128 denotes 2014
32265848-24837550-36510946 630-634 24837550 denotes 2014
32265848-25947097-36510947 653-657 25947097 denotes 2015
32265848-30531947-36510948 671-675 30531947 denotes 2019
32265848-22278237-36510950 782-786 22278237 denotes 2012
32265848-24227844-36510951 788-792 24227844 denotes 2014
32265848-25759498-36510952 805-809 25759498 denotes 2015
32265848-4285768-36510953 1131-1135 4285768 denotes 1966
32265848-15909257-36510954 1150-1154 15909257 denotes 2005
32265848-12690091-36510955 1451-1455 12690091 denotes 2003
32265848-12690092-36510956 1473-1477 12690092 denotes 2003
32265848-12684910-36510957 1494-1498 12684910 denotes 2003
32265848-15613317-36510958 1512-1516 15613317 denotes 2005
32265848-23075143-36510959 1531-1535 23075143 denotes 2012

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T16 0-117 Sentence denotes Coronaviruses (CoVs) belong to the subfamily Othocoronavirinae, in the family Coronaviridae of the order Nidovirales.
T17 118-431 Sentence denotes According to the 10th Report on Virus Taxonomy from the International Committee on Taxonomy of Viruses (ICTV), the Othocoronavirinae is comprised of four genera, including alphacoronavirus (alpha-CoV), betacoronavirus (beta-CoV), gammacoronavirus (gamma-CoV), and deltacoronavirus (delta-CoV) (King et al., 2018).
T18 432-677 Sentence denotes Alpha- and beta-CoVs can infect mammals, including but not limited to bats, pigs, cats, mice, and humans (Kusanagi et al., 1992; Li et al., 2005b; Poon et al., 2005; Drexler et al., 2014; Pedersen, 2014; Kudelova et al., 2015; Cui et al., 2019).
T19 678-811 Sentence denotes Gamma- and delta-CoVs usually infect birds, while some of them could infect mammals (Woo et al., 2009a, 2012, 2014; Ma et al., 2015).
T20 812-922 Sentence denotes Since the late sixties, CoVs have been recognized as one of the viral sources responsible for the common cold.
T21 923-1604 Sentence denotes Among all CoVs identified so far, seven have the ability to infect humans, including human coronavirus 229E (HCoV-229E) and human coronavirus NL63 (HCoV-NL63), which belong to alpha-CoVs (Hamre and Procknow, 1966; Chiu et al., 2005), as well as human coronavirus OC43 (HCoV-OC43), human coronavirus HKU1 (HCoV-HKU1), severe acute respiratory syndrome coronavirus (SARS-CoV), Middle East respiratory syndrome coronavirus (MERS-CoV), and the newly emerged coronavirus (2019-nCoV), which are known to be beta-CoVs (Drosten et al., 2003; Ksiazek et al., 2003; Vabret et al., 2003; Woo et al., 2005; Zaki et al., 2012; Du et al., 2016b; Zhang et al., 2020; Zhu et al., 2020) (Figure 1).

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T38 0-13 NCBITaxon:11118 denotes Coronaviruses
T39 45-62 NCBITaxon:99883 denotes Othocoronavirinae
T40 78-91 NCBITaxon:11118 denotes Coronaviridae
T41 105-116 NCBITaxon:99883 denotes Nidovirales
T42 150-155 NCBITaxon:7742 denotes Virus
T43 213-220 NCBITaxon:7742 denotes Viruses
T44 222-226 NCBITaxon:10359 denotes ICTV
T45 233-250 NCBITaxon:9986 denotes Othocoronavirinae
T46 290-306 NCBITaxon:8296 denotes alphacoronavirus
T47 314-317 NCBITaxon:11886 denotes CoV
T48 320-335 SP_8;NCBITaxon:694002 denotes betacoronavirus
T49 342-345 NCBITaxon:11886 denotes CoV
T50 348-364 NCBITaxon:86599 denotes gammacoronavirus
T51 382-398 NCBITaxon:86599 denotes deltacoronavirus
T52 406-409 NCBITaxon:11886 denotes CoV
T53 464-471 NCBITaxon:40674 denotes mammals
T54 502-506 SP_2;NCBITaxon:6960 denotes bats
T55 508-512 NCBITaxon:10140 denotes pigs
T56 514-518 NCBITaxon:9685 denotes cats
T57 520-524 NCBITaxon:10088 denotes mice
T58 530-536 NCBITaxon:9606 denotes humans
T59 715-720 NCBITaxon:8782 denotes birds
T60 754-761 NCBITaxon:40674 denotes mammals
T61 876-881 NCBITaxon:10239 denotes viral
T62 990-996 NCBITaxon:9606 denotes humans
T63 1008-1013 SP_6;NCBITaxon:9606 denotes human
T64 1014-1025 NCBITaxon:11118 denotes coronavirus
T65 1047-1052 SP_6;NCBITaxon:9606 denotes human
T66 1053-1064 NCBITaxon:11118 denotes coronavirus
T67 1168-1173 SP_6;NCBITaxon:9606 denotes human
T68 1174-1185 NCBITaxon:11118 denotes coronavirus
T69 1204-1209 SP_6;NCBITaxon:9606 denotes human
T70 1210-1221 NCBITaxon:11118 denotes coronavirus
T71 1240-1252 SP_10 denotes severe acute
T72 1253-1264 SP_10;UBERON:0001004 denotes respiratory
T73 1265-1285 SP_10 denotes syndrome coronavirus
T74 1287-1295 SP_10 denotes SARS-CoV
T75 1298-1342 SP_9 denotes Middle East respiratory syndrome coronavirus
T76 1344-1352 SP_9 denotes MERS-CoV
T77 1377-1388 NCBITaxon:11118 denotes coronavirus
T78 1390-1399 SP_7 denotes 2019-nCoV
T54056 0-13 NCBITaxon:11118 denotes Coronaviruses
T78451 45-62 NCBITaxon:99883 denotes Othocoronavirinae
T47386 78-91 NCBITaxon:11118 denotes Coronaviridae
T31045 105-116 NCBITaxon:99883 denotes Nidovirales
T59953 150-155 NCBITaxon:7742 denotes Virus
T61169 213-220 NCBITaxon:7742 denotes Viruses
T90106 222-226 NCBITaxon:10359 denotes ICTV
T59208 233-250 NCBITaxon:9986 denotes Othocoronavirinae
T22483 290-306 NCBITaxon:8296 denotes alphacoronavirus
T92907 314-317 NCBITaxon:11886 denotes CoV
T84232 320-335 SP_8;NCBITaxon:694002 denotes betacoronavirus
T65846 342-345 NCBITaxon:11886 denotes CoV
T35687 348-364 NCBITaxon:86599 denotes gammacoronavirus
T90578 382-398 NCBITaxon:86599 denotes deltacoronavirus
T76467 406-409 NCBITaxon:11886 denotes CoV
T45104 464-471 NCBITaxon:40674 denotes mammals
T67775 502-506 SP_2;NCBITaxon:6960 denotes bats
T7060 508-512 NCBITaxon:10140 denotes pigs
T39687 514-518 NCBITaxon:9685 denotes cats
T89747 520-524 NCBITaxon:10088 denotes mice
T86872 530-536 NCBITaxon:9606 denotes humans
T27119 715-720 NCBITaxon:8782 denotes birds
T27911 754-761 NCBITaxon:40674 denotes mammals
T25348 876-881 NCBITaxon:10239 denotes viral
T59864 990-996 NCBITaxon:9606 denotes humans
T87784 1008-1013 SP_6;NCBITaxon:9606 denotes human
T33188 1014-1025 NCBITaxon:11118 denotes coronavirus
T93370 1047-1052 SP_6;NCBITaxon:9606 denotes human
T32439 1053-1064 NCBITaxon:11118 denotes coronavirus
T97183 1168-1173 SP_6;NCBITaxon:9606 denotes human
T66612 1174-1185 NCBITaxon:11118 denotes coronavirus
T50666 1204-1209 SP_6;NCBITaxon:9606 denotes human
T48565 1210-1221 NCBITaxon:11118 denotes coronavirus
T95155 1240-1252 SP_10 denotes severe acute
T51489 1253-1264 SP_10;UBERON:0001004 denotes respiratory
T12646 1265-1285 SP_10 denotes syndrome coronavirus
T6898 1287-1295 SP_10 denotes SARS-CoV
T78320 1298-1342 SP_9 denotes Middle East respiratory syndrome coronavirus
T75968 1344-1352 SP_9 denotes MERS-CoV
T62195 1377-1388 NCBITaxon:11118 denotes coronavirus
T85542 1390-1399 SP_7 denotes 2019-nCoV