PMC:7103735 / 7632-8663
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T23 | 121-144 | Body_part | denotes | lower respiratory tract | http://purl.org/sig/ont/fma/fma45662 |
| T24 | 173-181 | Body_part | denotes | cytokine | http://purl.org/sig/ont/fma/fma84050 |
| T25 | 345-348 | Body_part | denotes | CNS | http://purl.org/sig/ont/fma/fma55675 |
| T26 | 428-433 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T27 | 513-520 | Body_part | denotes | embryos | http://purl.org/sig/ont/fma/fma296970 |
| T28 | 619-624 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T29 | 849-853 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T14 | 121-144 | Body_part | denotes | lower respiratory tract | http://purl.obolibrary.org/obo/UBERON_0001558 |
| T15 | 127-144 | Body_part | denotes | respiratory tract | http://purl.obolibrary.org/obo/UBERON_0000065 |
| T16 | 345-348 | Body_part | denotes | CNS | http://purl.obolibrary.org/obo/UBERON_0001017 |
| T17 | 849-853 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T76 | 0-8 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T77 | 0-4 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T78 | 63-67 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T79 | 95-113 | Disease | denotes | SARS-CoV infection | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T80 | 95-99 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T81 | 104-113 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T82 | 127-154 | Disease | denotes | respiratory tract infection | http://purl.obolibrary.org/obo/MONDO_0024355 |
| T83 | 145-154 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T84 | 236-240 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
| T85 | 301-322 | Disease | denotes | respiratory infection | http://purl.obolibrary.org/obo/MONDO_0024355 |
| T86 | 313-322 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T87 | 349-358 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T88 | 396-400 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T89 | 479-487 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T90 | 479-483 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T91 | 557-567 | Disease | denotes | infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T92 | 568-578 | Disease | denotes | bronchitis | http://purl.obolibrary.org/obo/MONDO_0003781 |
| T93 | 651-669 | Disease | denotes | SARS-CoV infection | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T94 | 651-655 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T95 | 660-669 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T96 | 743-752 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T97 | 775-783 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T98 | 775-779 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T99 | 975-993 | Disease | denotes | SARS-CoV infection | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T100 | 975-979 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T101 | 984-993 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T89 | 121-144 | http://purl.obolibrary.org/obo/UBERON_0001558 | denotes | lower respiratory tract |
| T90 | 171-172 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T91 | 299-300 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T92 | 345-348 | http://www.ebi.ac.uk/efo/EFO_0000302 | denotes | CNS |
| T93 | 345-348 | http://www.ebi.ac.uk/efo/EFO_0000908 | denotes | CNS |
| T94 | 345-348 | http://purl.obolibrary.org/obo/UBERON_0001017 | denotes | CNS |
| T95 | 410-415 | http://purl.obolibrary.org/obo/CLO_0003388 | denotes | FRHK4 |
| T96 | 420-433 | http://purl.obolibrary.org/obo/CLO_0051719 | denotes | Vero-E6 cells |
| T97 | 505-512 | http://purl.obolibrary.org/obo/NCBITaxon_9031 | denotes | chicken |
| T98 | 513-520 | http://purl.obolibrary.org/obo/UBERON_0000922 | denotes | embryos |
| T99 | 579-584 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T100 | 603-624 | http://purl.obolibrary.org/obo/CL_0000010 | denotes | cultured, these cells |
| T101 | 687-704 | http://purl.obolibrary.org/obo/PR_000024990 | denotes | type I interferon |
| T102 | 796-797 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T103 | 818-819 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T104 | 849-853 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T105 | 849-853 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T106 | 888-893 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T19 | 694-704 | Chemical | denotes | interferon | http://purl.obolibrary.org/obo/CHEBI_52999 |
| T20 | 938-947 | Chemical | denotes | antiviral | http://purl.obolibrary.org/obo/CHEBI_22587 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T11 | 938-956 | http://purl.obolibrary.org/obo/GO_0051607 | denotes | antiviral response |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T63 | 0-72 | Sentence | denotes | SARS-CoV was isolated and identified as the causative agent of SARS [9]. |
| T64 | 73-218 | Sentence | denotes | Unlike 229E and OC43, SARS-CoV infection causes lower respiratory tract infection, accompanied by a cytokine storm in patients with poor outcome. |
| T65 | 219-287 | Sentence | denotes | Life-threatening ARDS was developed in some critically ill patients. |
| T66 | 288-409 | Sentence | denotes | Apart from a respiratory infection, gastrointestinal and CNS infection was also found in some patients with SARS [10,11]. |
| T67 | 410-492 | Sentence | denotes | FRHK4 and Vero-E6 cells played an important role in the discovery of SARS-CoV [9]. |
| T68 | 493-720 | Sentence | denotes | The same as chicken embryos in which other CoVs including avian infectious bronchitis virus were isolated and cultured, these cells are highly susceptible to SARS-CoV infection because they are type I interferon-defective [12]. |
| T69 | 721-859 | Sentence | denotes | Consistent with this, infection of STAT1−/− mice with SARS-CoV resulted in a lethal outcome with a profibrotic phenotype in the lung [13]. |
| T70 | 860-894 | Sentence | denotes | These mice cannot clear the virus. |
| T71 | 895-1031 | Sentence | denotes | All these highlight the importance of host antiviral response in the control of SARS-CoV infection at the cellular and organismal level. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T11 | 121-154 | Phenotype | denotes | lower respiratory tract infection | http://purl.obolibrary.org/obo/HP_0002783 |
| T12 | 173-187 | Phenotype | denotes | cytokine storm | http://purl.obolibrary.org/obo/HP_0033041 |
| T13 | 301-322 | Phenotype | denotes | respiratory infection | http://purl.obolibrary.org/obo/HP_0011947 |
| T14 | 568-578 | Phenotype | denotes | bronchitis | http://purl.obolibrary.org/obo/HP_0012387 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32172672-12711465-27782202 | 69-70 | 12711465 | denotes | 9 |
| 32172672-14517783-27782203 | 402-404 | 14517783 | denotes | 10 |
| 32172672-16163626-27782204 | 405-407 | 16163626 | denotes | 11 |
| 32172672-12711465-27782205 | 489-490 | 12711465 | denotes | 9 |
| 32172672-4302013-27782206 | 716-718 | 4302013 | denotes | 12 |
| 32172672-20702617-27782207 | 855-857 | 20702617 | denotes | 13 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 207 | 756-761 | Gene | denotes | STAT1 | Gene:20846 |
| 208 | 0-8 | Species | denotes | SARS-CoV | Tax:694009 |
| 209 | 191-199 | Species | denotes | patients | Tax:9606 |
| 210 | 278-286 | Species | denotes | patients | Tax:9606 |
| 211 | 382-390 | Species | denotes | patients | Tax:9606 |
| 212 | 479-487 | Species | denotes | SARS-CoV | Tax:694009 |
| 213 | 505-512 | Species | denotes | chicken | Tax:9031 |
| 214 | 536-540 | Species | denotes | CoVs | Tax:11118 |
| 215 | 551-584 | Species | denotes | avian infectious bronchitis virus | Tax:11120 |
| 216 | 765-769 | Species | denotes | mice | Tax:10090 |
| 217 | 775-783 | Species | denotes | SARS-CoV | Tax:694009 |
| 218 | 866-870 | Species | denotes | mice | Tax:10090 |
| 219 | 95-113 | Disease | denotes | SARS-CoV infection | MESH:C000657245 |
| 220 | 127-154 | Disease | denotes | respiratory tract infection | MESH:D012141 |
| 221 | 236-240 | Disease | denotes | ARDS | MESH:D012128 |
| 222 | 263-277 | Disease | denotes | critically ill | MESH:D016638 |
| 223 | 301-322 | Disease | denotes | respiratory infection | MESH:D012141 |
| 224 | 345-358 | Disease | denotes | CNS infection | MESH:D002494 |
| 225 | 651-669 | Disease | denotes | SARS-CoV infection | MESH:C000657245 |
| 226 | 743-752 | Disease | denotes | infection | MESH:D007239 |
| 227 | 975-993 | Disease | denotes | SARS-CoV infection | MESH:C000657245 |
MyTest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32172672-12711465-27782202 | 69-70 | 12711465 | denotes | 9 |
| 32172672-14517783-27782203 | 402-404 | 14517783 | denotes | 10 |
| 32172672-16163626-27782204 | 405-407 | 16163626 | denotes | 11 |
| 32172672-12711465-27782205 | 489-490 | 12711465 | denotes | 9 |
| 32172672-4302013-27782206 | 716-718 | 4302013 | denotes | 12 |
| 32172672-20702617-27782207 | 855-857 | 20702617 | denotes | 13 |