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PMC:7103735 / 44837-45706 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T190 154-158 Body_part denotes IL-1 http://purl.org/sig/ont/fma/fma86583
T191 154-156 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T192 225-229 Body_part denotes IL-1 http://purl.org/sig/ont/fma/fma86583
T193 225-227 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T194 330-338 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T195 594-598 Body_part denotes IL-1 http://purl.org/sig/ont/fma/fma86583
T196 594-596 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T197 638-645 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T198 700-704 Body_part denotes IL-1 http://purl.org/sig/ont/fma/fma86583
T199 700-702 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T200 706-719 Body_part denotes interleukin-1 http://purl.org/sig/ont/fma/fma86583
T201 726-745 Body_part denotes lipopolysaccharides http://purl.org/sig/ont/fma/fma82785
T202 793-800 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T414 19-27 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T415 19-23 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T416 61-69 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T417 61-65 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T418 410-413 Disease denotes ASC http://purl.obolibrary.org/obo/MONDO_0019018
T419 601-604 Disease denotes ASC http://purl.obolibrary.org/obo/MONDO_0019018
T420 659-663 Disease denotes CARD http://purl.obolibrary.org/obo/MONDO_0002145

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T501 0-1 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T502 49-59 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T503 74-82 http://purl.obolibrary.org/obo/CLO_0001658 denotes activate
T504 88-94 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T505 111-117 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T506 121-131 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T507 193-194 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T508 195-205 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T509 495-504 http://purl.obolibrary.org/obo/CLO_0001658 denotes activates
T510 512-522 http://purl.obolibrary.org/obo/CLO_0001658 denotes Activation
T511 657-658 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T512 690-691 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T513 706-719 http://purl.obolibrary.org/obo/PR_000001091 denotes interleukin-1
T514 814-815 http://purl.obolibrary.org/obo/CLO_0001021 denotes B

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T181 154-156 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T183 189-191 Chemical denotes NF http://purl.obolibrary.org/obo/CHEBI_141424|http://purl.obolibrary.org/obo/CHEBI_25573|http://purl.obolibrary.org/obo/CHEBI_1224
T186 225-227 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T188 282-291 Chemical denotes potassium http://purl.obolibrary.org/obo/CHEBI_26216
T189 292-295 Chemical denotes ion http://purl.obolibrary.org/obo/CHEBI_24870
T190 330-338 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T191 594-596 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T193 638-645 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T194 700-702 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T196 721-724 Chemical denotes LPS http://purl.obolibrary.org/obo/CHEBI_16412|http://purl.obolibrary.org/obo/CHEBI_52603|http://purl.obolibrary.org/obo/CHEBI_89981
T199 726-745 Chemical denotes lipopolysaccharides http://purl.obolibrary.org/obo/CHEBI_16412
T200 793-800 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T201 810-812 Chemical denotes NF http://purl.obolibrary.org/obo/CHEBI_141424|http://purl.obolibrary.org/obo/CHEBI_25573|http://purl.obolibrary.org/obo/CHEBI_1224

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T95 160-173 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T96 296-302 http://purl.obolibrary.org/obo/GO_0140352 denotes efflux
T97 296-302 http://purl.obolibrary.org/obo/GO_0140115 denotes efflux
T98 606-615 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T99 606-615 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis
T100 851-859 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T101 851-859 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T102 851-859 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T103 851-859 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T369 0-60 Sentence denotes A working model of SARS-CoV-induced inflammasome activation.
T370 61-133 Sentence denotes SARS-CoV can activate both signal 1 (priming) and signal 2 (activation).
T371 134-206 Sentence denotes Upregulation of pro-IL-1β transcription is achieved by NF-κB activation.
T372 207-261 Sentence denotes Two mechanisms of IL-1β maturation have been proposed.
T373 262-379 Sentence denotes In the first model, potassium ion efflux is promoted by ORF3a and E proteins, leading to NLRP3 inflammasome assembly.
T374 380-469 Sentence denotes Alternatively, ORF3a promotes ASC ubiquitination and consequent assembly of inflammasome.
T375 470-511 Sentence denotes ORG8b interacts with and activates NLRP3.
T376 512-600 Sentence denotes Activation of inflammasome leads to proteolytic cleavage of pro-caspase 1 and pro-IL-1β.
T377 601-664 Sentence denotes ASC, apoptosis-associated speck-like protein containing a CARD.
T378 665-682 Sentence denotes CASP1, caspase 1.
T379 683-699 Sentence denotes IKK, IκB kinase.
T380 700-720 Sentence denotes IL-1, interleukin-1.
T381 721-746 Sentence denotes LPS, lipopolysaccharides.
T382 747-803 Sentence denotes NLRP3, NACHT, LRR, and PYD domains-containing protein 3.
T383 804-836 Sentence denotes NEMO, NF-κB essential modulator.
T384 837-869 Sentence denotes TNF-α, tumour necrosis factor α.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T33 844-850 Phenotype denotes tumour http://purl.obolibrary.org/obo/HP_0002664

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1224 150-159 Gene denotes pro-IL-1β Gene:3553
1225 189-194 Gene denotes NF-κB Gene:4790
1226 225-230 Gene denotes IL-1β Gene:3552
1227 351-356 Gene denotes NLRP3 Gene:114548
1228 505-510 Gene denotes NLRP3 Gene:114548
1229 590-599 Gene denotes pro-IL-1β Gene:3553
1230 601-604 Gene denotes ASC Gene:29108
1231 606-663 Gene denotes apoptosis-associated speck-like protein containing a CARD Gene:29108
1232 665-670 Gene denotes CASP1 Gene:834
1233 672-681 Gene denotes caspase 1 Gene:834
1234 683-686 Gene denotes IKK Gene:8517
1235 700-704 Gene denotes IL-1 Gene:3552
1236 706-719 Gene denotes interleukin-1 Gene:3552
1237 747-752 Gene denotes NLRP3 Gene:114548
1238 754-802 Gene denotes NACHT, LRR, and PYD domains-containing protein 3 Gene:114548
1239 804-808 Gene denotes NEMO Gene:8517
1240 810-815 Gene denotes NF-κB Gene:4790
1241 837-842 Gene denotes TNF-α Gene:7124
1242 19-27 Species denotes SARS-CoV Tax:694009
1243 61-69 Species denotes SARS-CoV Tax:694009
1244 410-413 Gene denotes ASC Gene:29108
1245 282-291 Chemical denotes potassium MESH:D011188
1246 726-745 Chemical denotes lipopolysaccharides MESH:D008070
1247 844-859 Disease denotes tumour necrosis MESH:D009336