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PMC:7103735 / 44827-45706 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T190 164-168 Body_part denotes IL-1 http://purl.org/sig/ont/fma/fma86583
T191 164-166 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T192 235-239 Body_part denotes IL-1 http://purl.org/sig/ont/fma/fma86583
T193 235-237 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T194 340-348 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T195 604-608 Body_part denotes IL-1 http://purl.org/sig/ont/fma/fma86583
T196 604-606 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T197 648-655 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T198 710-714 Body_part denotes IL-1 http://purl.org/sig/ont/fma/fma86583
T199 710-712 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T200 716-729 Body_part denotes interleukin-1 http://purl.org/sig/ont/fma/fma86583
T201 736-755 Body_part denotes lipopolysaccharides http://purl.org/sig/ont/fma/fma82785
T202 803-810 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T414 29-37 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T415 29-33 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T416 71-79 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T417 71-75 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T418 420-423 Disease denotes ASC http://purl.obolibrary.org/obo/MONDO_0019018
T419 611-614 Disease denotes ASC http://purl.obolibrary.org/obo/MONDO_0019018
T420 669-673 Disease denotes CARD http://purl.obolibrary.org/obo/MONDO_0002145

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T501 10-11 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T502 59-69 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T503 84-92 http://purl.obolibrary.org/obo/CLO_0001658 denotes activate
T504 98-104 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T505 121-127 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T506 131-141 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T507 203-204 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T508 205-215 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T509 505-514 http://purl.obolibrary.org/obo/CLO_0001658 denotes activates
T510 522-532 http://purl.obolibrary.org/obo/CLO_0001658 denotes Activation
T511 667-668 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T512 700-701 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T513 716-729 http://purl.obolibrary.org/obo/PR_000001091 denotes interleukin-1
T514 824-825 http://purl.obolibrary.org/obo/CLO_0001021 denotes B

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T181 164-166 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T183 199-201 Chemical denotes NF http://purl.obolibrary.org/obo/CHEBI_141424|http://purl.obolibrary.org/obo/CHEBI_25573|http://purl.obolibrary.org/obo/CHEBI_1224
T186 235-237 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T188 292-301 Chemical denotes potassium http://purl.obolibrary.org/obo/CHEBI_26216
T189 302-305 Chemical denotes ion http://purl.obolibrary.org/obo/CHEBI_24870
T190 340-348 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T191 604-606 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T193 648-655 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T194 710-712 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T196 731-734 Chemical denotes LPS http://purl.obolibrary.org/obo/CHEBI_16412|http://purl.obolibrary.org/obo/CHEBI_52603|http://purl.obolibrary.org/obo/CHEBI_89981
T199 736-755 Chemical denotes lipopolysaccharides http://purl.obolibrary.org/obo/CHEBI_16412
T200 803-810 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T201 820-822 Chemical denotes NF http://purl.obolibrary.org/obo/CHEBI_141424|http://purl.obolibrary.org/obo/CHEBI_25573|http://purl.obolibrary.org/obo/CHEBI_1224

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T95 170-183 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T96 306-312 http://purl.obolibrary.org/obo/GO_0140352 denotes efflux
T97 306-312 http://purl.obolibrary.org/obo/GO_0140115 denotes efflux
T98 616-625 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T99 616-625 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis
T100 861-869 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T101 861-869 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T102 861-869 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T103 861-869 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T368 0-9 Sentence denotes Figure 2.
T369 10-70 Sentence denotes A working model of SARS-CoV-induced inflammasome activation.
T370 71-143 Sentence denotes SARS-CoV can activate both signal 1 (priming) and signal 2 (activation).
T371 144-216 Sentence denotes Upregulation of pro-IL-1β transcription is achieved by NF-κB activation.
T372 217-271 Sentence denotes Two mechanisms of IL-1β maturation have been proposed.
T373 272-389 Sentence denotes In the first model, potassium ion efflux is promoted by ORF3a and E proteins, leading to NLRP3 inflammasome assembly.
T374 390-479 Sentence denotes Alternatively, ORF3a promotes ASC ubiquitination and consequent assembly of inflammasome.
T375 480-521 Sentence denotes ORG8b interacts with and activates NLRP3.
T376 522-610 Sentence denotes Activation of inflammasome leads to proteolytic cleavage of pro-caspase 1 and pro-IL-1β.
T377 611-674 Sentence denotes ASC, apoptosis-associated speck-like protein containing a CARD.
T378 675-692 Sentence denotes CASP1, caspase 1.
T379 693-709 Sentence denotes IKK, IκB kinase.
T380 710-730 Sentence denotes IL-1, interleukin-1.
T381 731-756 Sentence denotes LPS, lipopolysaccharides.
T382 757-813 Sentence denotes NLRP3, NACHT, LRR, and PYD domains-containing protein 3.
T383 814-846 Sentence denotes NEMO, NF-κB essential modulator.
T384 847-879 Sentence denotes TNF-α, tumour necrosis factor α.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T33 854-860 Phenotype denotes tumour http://purl.obolibrary.org/obo/HP_0002664

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1224 160-169 Gene denotes pro-IL-1β Gene:3553
1225 199-204 Gene denotes NF-κB Gene:4790
1226 235-240 Gene denotes IL-1β Gene:3552
1227 361-366 Gene denotes NLRP3 Gene:114548
1228 515-520 Gene denotes NLRP3 Gene:114548
1229 600-609 Gene denotes pro-IL-1β Gene:3553
1230 611-614 Gene denotes ASC Gene:29108
1231 616-673 Gene denotes apoptosis-associated speck-like protein containing a CARD Gene:29108
1232 675-680 Gene denotes CASP1 Gene:834
1233 682-691 Gene denotes caspase 1 Gene:834
1234 693-696 Gene denotes IKK Gene:8517
1235 710-714 Gene denotes IL-1 Gene:3552
1236 716-729 Gene denotes interleukin-1 Gene:3552
1237 757-762 Gene denotes NLRP3 Gene:114548
1238 764-812 Gene denotes NACHT, LRR, and PYD domains-containing protein 3 Gene:114548
1239 814-818 Gene denotes NEMO Gene:8517
1240 820-825 Gene denotes NF-κB Gene:4790
1241 847-852 Gene denotes TNF-α Gene:7124
1242 29-37 Species denotes SARS-CoV Tax:694009
1243 71-79 Species denotes SARS-CoV Tax:694009
1244 420-423 Gene denotes ASC Gene:29108
1245 292-301 Chemical denotes potassium MESH:D011188
1246 736-755 Chemical denotes lipopolysaccharides MESH:D008070
1247 854-869 Disease denotes tumour necrosis MESH:D009336