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PMC:7103724 / 8716-11428 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T21 66-82 Body_part denotes white blood cell http://purl.org/sig/ont/fma/fma62852
T22 78-82 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T23 228-233 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T24 238-244 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T25 689-694 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T26 717-722 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T27 848-853 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T28 1016-1020 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T29 1320-1323 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T30 1330-1333 Body_part denotes IgA http://purl.org/sig/ont/fma/fma62874
T31 1340-1343 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T32 2317-2333 Body_part denotes white blood cell http://purl.org/sig/ont/fma/fma62852
T33 2329-2333 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T34 2338-2348 Body_part denotes Neutrophil http://purl.org/sig/ont/fma/fma62860
T35 2353-2363 Body_part denotes Lymphocyte http://purl.org/sig/ont/fma/fma62863
T36 2381-2391 Body_part denotes Hemoglobin http://purl.org/sig/ont/fma/fma62293
T37 2398-2409 Body_part denotes erythrocyte http://purl.org/sig/ont/fma/fma62845
T38 2450-2457 Body_part denotes alanine http://purl.org/sig/ont/fma/fma82749
T39 2536-2539 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T40 2541-2557 Body_part denotes Immunoglobulin M http://purl.org/sig/ont/fma/fma62873
T41 2541-2555 Body_part denotes Immunoglobulin http://purl.org/sig/ont/fma/fma62871
T42 2559-2562 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872
T43 2564-2580 Body_part denotes Immunoglobulin G http://purl.org/sig/ont/fma/fma62872
T44 2564-2578 Body_part denotes Immunoglobulin http://purl.org/sig/ont/fma/fma62871
T45 2586-2602 Body_part denotes Immunoglobulin A http://purl.org/sig/ont/fma/fma62874
T46 2586-2600 Body_part denotes Immunoglobulin http://purl.org/sig/ont/fma/fma62871
T47 2654-2659 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T48 2696-2701 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T16 72-77 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T17 228-233 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T18 238-244 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T19 689-694 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T20 717-722 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T21 848-853 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T22 1016-1020 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T23 2323-2328 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T24 2654-2659 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T25 2696-2701 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T32 134-149 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T33 140-149 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T34 189-191 Disease denotes CK http://purl.obolibrary.org/obo/MONDO_0017941
T35 266-278 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T36 306-309 Disease denotes PCT http://purl.obolibrary.org/obo/MONDO_0008296|http://purl.obolibrary.org/obo/MONDO_0015104
T38 386-396 Disease denotes bronchitis http://purl.obolibrary.org/obo/MONDO_0003781
T39 420-439 Disease denotes bronchial pneumonia http://purl.obolibrary.org/obo/MONDO_0005682
T40 430-439 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T41 1241-1244 Disease denotes PCT http://purl.obolibrary.org/obo/MONDO_0008296|http://purl.obolibrary.org/obo/MONDO_0015104
T43 1285-1287 Disease denotes CK http://purl.obolibrary.org/obo/MONDO_0017941
T44 2425-2428 Disease denotes PCT http://purl.obolibrary.org/obo/MONDO_0008296|http://purl.obolibrary.org/obo/MONDO_0015104
T46 2509-2511 Disease denotes CK http://purl.obolibrary.org/obo/MONDO_0017941
T47 2702-2709 Disease denotes amyloid http://purl.obolibrary.org/obo/MONDO_0019065

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T60 72-77 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T61 78-82 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T62 192-194 http://purl.obolibrary.org/obo/PR_000010213 denotes MB
T63 228-233 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T64 228-233 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T65 238-244 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T66 238-244 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T67 238-244 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T68 565-566 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T69 637-638 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T70 689-694 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T71 717-722 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T72 736-737 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T73 769-771 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T74 834-835 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T75 848-853 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T76 945-946 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T77 1016-1020 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T78 1016-1020 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T79 1210-1212 http://purl.obolibrary.org/obo/CLO_0003622 denotes Hb
T80 1258-1260 http://purl.obolibrary.org/obo/CLO_0008426 denotes pg
T81 1288-1290 http://purl.obolibrary.org/obo/PR_000010213 denotes MB
T82 1297-1300 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T83 1305-1308 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T84 1359-1361 http://purl.obolibrary.org/obo/CLO_0037284 denotes C4
T85 1385-1394 http://purl.obolibrary.org/obo/PR_000010213 denotes Myoglobin
T86 1407-1409 http://purl.obolibrary.org/obo/CLO_0008426 denotes pg
T87 1462-1464 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T88 1465-1467 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T89 1612-1614 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T90 1637-1640 http://purl.obolibrary.org/obo/CLO_0001230 denotes 293
T91 1637-1640 http://purl.obolibrary.org/obo/CLO_0037237 denotes 293
T92 1637-1640 http://purl.obolibrary.org/obo/CLO_0050903 denotes 293
T93 1637-1640 http://purl.obolibrary.org/obo/CLO_0054249 denotes 293
T94 1637-1640 http://purl.obolibrary.org/obo/CLO_0054250 denotes 293
T95 1637-1640 http://purl.obolibrary.org/obo/CLO_0054251 denotes 293
T96 1637-1640 http://purl.obolibrary.org/obo/CLO_0054252 denotes 293
T97 1714-1718 http://purl.obolibrary.org/obo/CLO_0001230 denotes 29 3
T98 1714-1718 http://purl.obolibrary.org/obo/CLO_0037237 denotes 29 3
T99 1714-1718 http://purl.obolibrary.org/obo/CLO_0050903 denotes 29 3
T100 1714-1718 http://purl.obolibrary.org/obo/CLO_0054249 denotes 29 3
T101 1714-1718 http://purl.obolibrary.org/obo/CLO_0054250 denotes 29 3
T102 1714-1718 http://purl.obolibrary.org/obo/CLO_0054251 denotes 29 3
T103 1714-1718 http://purl.obolibrary.org/obo/CLO_0054252 denotes 29 3
T104 1811-1814 http://purl.obolibrary.org/obo/CLO_0001046 denotes 116
T105 1864-1866 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T106 1962-1964 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T107 2062-2064 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T108 2134-2137 http://purl.obolibrary.org/obo/CLO_0001046 denotes 116
T109 2154-2156 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T110 2160-2162 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T111 2250-2252 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T112 2298-2300 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T113 2323-2328 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T114 2329-2333 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T115 2377-2379 http://purl.obolibrary.org/obo/CLO_0003622 denotes Hb
T116 2398-2409 http://purl.obolibrary.org/obo/CL_0000232 denotes erythrocyte
T117 2512-2514 http://purl.obolibrary.org/obo/PR_000010213 denotes MB
T118 2532-2534 http://purl.obolibrary.org/obo/PR_000010213 denotes MB
T119 2601-2602 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T120 2621-2623 http://purl.obolibrary.org/obo/CLO_0037284 denotes C4
T121 2654-2659 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T122 2654-2659 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T123 2672-2679 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T124 2710-2711 http://purl.obolibrary.org/obo/CLO_0001020 denotes A

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T23 201-204 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649
T24 319-321 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T26 1252-1254 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T28 1275-1278 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649
T29 1368-1376 Chemical denotes Ferritin http://purl.obolibrary.org/obo/CHEBI_82594
T30 1385-1394 Chemical denotes Myoglobin http://purl.obolibrary.org/obo/CHEBI_7044
T31 1402-1405 Chemical denotes BNP http://purl.obolibrary.org/obo/CHEBI_80234
T32 2381-2391 Chemical denotes Hemoglobin http://purl.obolibrary.org/obo/CHEBI_5656
T33 2450-2457 Chemical denotes alanine http://purl.obolibrary.org/obo/CHEBI_16449
T34 2476-2479 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649
T35 2481-2490 Chemical denotes aspartate http://purl.obolibrary.org/obo/CHEBI_132943|http://purl.obolibrary.org/obo/CHEBI_29995|http://purl.obolibrary.org/obo/CHEBI_72314
T38 2516-2524 Chemical denotes creatine http://purl.obolibrary.org/obo/CHEBI_16919|http://purl.obolibrary.org/obo/CHEBI_57947
T40 2638-2641 Chemical denotes BNP http://purl.obolibrary.org/obo/CHEBI_80234
T41 2654-2679 Chemical denotes brain natriuretic peptide http://purl.obolibrary.org/obo/CHEBI_80234
T42 2672-2679 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 134-149 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection
T3 189-194 http://purl.obolibrary.org/obo/GO_0004111 denotes CK-MB
T4 266-278 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T5 1285-1290 http://purl.obolibrary.org/obo/GO_0004111 denotes CK-MB
T6 2509-2514 http://purl.obolibrary.org/obo/GO_0004111 denotes CK-MB

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T72 0-150 Sentence denotes As shown in Table 2, 8/9 (88.9%) children had normal or decreased white blood cell counts, consistent with the main characteristic of viral infection.
T73 151-195 Sentence denotes Six children (66.7%) showed increased CK-MB.
T74 196-261 Sentence denotes ALT, AST and the other index of liver and kidney were all normal.
T75 262-357 Sentence denotes All inflammation indicators, including CRP, PCT, ESR and IL-6 were all within the normal range.
T76 358-440 Sentence denotes Two children (22.2%) showed bronchitis and one (11.1%) showed bronchial pneumonia.
T77 441-641 Sentence denotes One (11.1%) boy (the older of the twins) showed pulmonary consolidation and ground glass opacity on the first day (Figure 1(A)) admitted in the hospital, and disappeared after five days (Figure 1(B)).
T78 642-706 Sentence denotes Five other (55.6%) children showed no abnormal chest radiograph.
T79 707-716 Sentence denotes Figure 1:
T80 717-1105 Sentence denotes Chest CT images of a case 7 and case 8 (one pair of 11 month old twins) patient upon admission, who had no symptom. (A) Transverse chest CT images showed pulmonary consolidation and ground glass opacity (case 7 on 7 February). (B) Showed marked improvement after 5 days (case 7 on 13 February). (C) Lung CT of case 8 – the case 7’s younger brother on admission day (case 8 on 7 February).
T81 1106-1114 Sentence denotes Table 2.
T82 1115-1164 Sentence denotes The laboratory results of nine children patients.
T83 1165-1173 Sentence denotes Case no.
T84 1174-1417 Sentence denotes WBC (109/L) N (%) L (%) PLT (109/L) Hb (g/L) CRP (mg/L) ESR (mm/h) PCT (ug/L) IL-6 (pg/ml) ALT (U/L) AST (U/L) CK-MB (U/L) CD4 (%) CD8 (%) NK (%) IgM (g/L) IgA (g/L) IgG (g/L) C3 (g/L) C4 (g/L) Ferritin D-dimer Myoglobin (ug/l) BNP (pg/ml) SAA
T85 1418-1517 Sentence denotes 1 8.48 32.1 59.9 361 128 0.12 5 0.04 1.5 13 35 34 31.9 34.6 16.5 1.0 0.6 7 0.8 0.2 45.5 0.3 9 133 3
T86 1518-1619 Sentence denotes 2 7.55 20.4 73.6 193 120 0.35 2 0.08 1.5 14 33 28 28.3 27.1 27.3 1.2 0.8 7.3 0.8 0.3 33.6 0.3 11 24 4
T87 1620-1718 Sentence denotes 3 3.78 38.7 43.9 293 119 0.19 7 0.05 1.5 15 28 23 33.2 35.6 – 1.1 1.6 12.9 1.0 0.2 85.6 0.4 9 29 3
T88 1719-1792 Sentence denotes 4 4.14 23.6 69.3 65 129 0.18 6 0.04 1.5 14 28 30 46.6 20.2 8.5 1.1 0.8 6.
T89 1793-1816 Sentence denotes 9 1.0 0.2 – 0.2 9 116 5
T90 1817-1917 Sentence denotes 5 3.69 33.8 53.3 169 106 0.12 5 0.03 1.5 15 23 22 45.7 33.4 14,8 0.9 0.6 8.1 0.1 1.0 48.1 0.1 9 87 3
T91 1918-2019 Sentence denotes 6 9.33 27.8 66.7 278 133 0.24 2 0.08 1.5 13 36 76 36.9 22.6 16.7 1.6 1.7 16.3 1.0 0.2 50.7 0.2 9 39 6
T92 2020-2112 Sentence denotes 7 11.17 17.2 77.4 305 117 0.19 2 0.04 1.5 22 39 43 – – – 1.3 0.3 7.1 0.7 0.1 62.6 0.3 9 31 3
T93 2113-2203 Sentence denotes 8 9.42 24.5 68.6 358 116 0.19 2 0.04 1.5 22 42 52 – – – 0.6 0.2 7.0 0.7 0.1 59.7 0.3 9 2 3
T94 2204-2274 Sentence denotes 9 5.45 41.2 53.0 235 140 0.26 3 0.02 1.5 9 24 27 33.1 29.3 16.5 1.3 1.
T95 2275-2305 Sentence denotes 6 8.9 1.0 0.2 45.6 0.3 18 23 5
T96 2306-2712 Sentence denotes Note: WBC, white blood cell; N, Neutrophil; L, Lymphocyte; PLT, plate; Hb, Hemoglobin; ESR, erythrocyte sedimentation; PCT, Procalcitonin; ALT, alanine aminotransferase; AST, aspartate aminotransferase; CK-MB, creatine kinase MB; IgM, Immunoglobulin M; IgG, Immunoglobulin G; Ig, Immunoglobulin A; C3, complement3; C4, complement4; BNP, N-terminal brain natriuretic peptide precursor; SAA, Serum amyloid A.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T26 386-396 Phenotype denotes bronchitis http://purl.obolibrary.org/obo/HP_0012387
T27 430-439 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
195 789-796 Species denotes patient Tax:9606
203 1219-1222 Gene denotes CRP Gene:1401
204 1252-1256 Gene denotes IL-6 Gene:3569
205 1275-1278 Gene denotes AST Gene:26503
206 1297-1300 Gene denotes CD4 Gene:920
207 1385-1394 Gene denotes Myoglobin Gene:4151
208 1402-1405 Gene denotes BNP Gene:4879
209 1414-1417 Gene denotes SAA Gene:6287
212 1146-1154 Species denotes children Tax:9606
213 1155-1163 Species denotes patients Tax:9606
220 2450-2474 Gene denotes alanine aminotransferase Gene:2875
221 2476-2479 Gene denotes AST Gene:26503
222 2638-2641 Gene denotes BNP Gene:4879
223 2691-2694 Gene denotes SAA Gene:6287
224 2696-2711 Gene denotes Serum amyloid A Gene:6287
225 2608-2619 Gene denotes complement3 Gene:718
238 201-204 Gene denotes AST Gene:26503
239 301-304 Gene denotes CRP Gene:1401
240 319-323 Gene denotes IL-6 Gene:3569
241 33-41 Species denotes children Tax:9606
242 155-163 Species denotes children Tax:9606
243 362-370 Species denotes children Tax:9606
244 453-456 Species denotes boy Tax:9606
245 661-669 Species denotes children Tax:9606
246 134-149 Disease denotes viral infection MESH:D001102
247 266-278 Disease denotes inflammation MESH:D007249
248 386-396 Disease denotes bronchitis MESH:D001991
249 430-439 Disease denotes pneumonia MESH:D011014