PMC:7102560 / 5680-7650
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T13 | 104-108 | Body_part | denotes | body | http://purl.org/sig/ont/fma/fma256135 |
| T14 | 196-200 | Body_part | denotes | body | http://purl.org/sig/ont/fma/fma256135 |
| T15 | 235-258 | Body_part | denotes | upper respiratory tract | http://purl.org/sig/ont/fma/fma45661 |
| T16 | 325-331 | Body_part | denotes | throat | http://purl.org/sig/ont/fma/fma228738 |
| T17 | 1053-1059 | Body_part | denotes | throat | http://purl.org/sig/ont/fma/fma228738 |
| T18 | 1131-1147 | Body_part | denotes | White blood cell | http://purl.org/sig/ont/fma/fma62852 |
| T19 | 1143-1147 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T20 | 1161-1166 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T21 | 1194-1204 | Body_part | denotes | Neutrophil | http://purl.org/sig/ont/fma/fma62860 |
| T22 | 1218-1223 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T23 | 1251-1261 | Body_part | denotes | Lymphocyte | http://purl.org/sig/ont/fma/fma62863 |
| T24 | 1275-1280 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T25 | 1308-1316 | Body_part | denotes | Monocyte | http://purl.org/sig/ont/fma/fma62864 |
| T26 | 1330-1335 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T27 | 1367-1377 | Body_part | denotes | Eosinophil | http://purl.org/sig/ont/fma/fma62861 |
| T28 | 1391-1396 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T29 | 1426-1435 | Body_part | denotes | Basophile | http://purl.org/sig/ont/fma/fma62862 |
| T30 | 1449-1454 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T31 | 1498-1505 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T32 | 1921-1928 | Body_part | denotes | alanine | http://purl.org/sig/ont/fma/fma82749 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T12 | 235-258 | Body_part | denotes | upper respiratory tract | http://purl.obolibrary.org/obo/UBERON_0001557 |
| T13 | 241-258 | Body_part | denotes | respiratory tract | http://purl.obolibrary.org/obo/UBERON_0000065 |
| T14 | 325-331 | Body_part | denotes | throat | http://purl.obolibrary.org/obo/UBERON_0000341 |
| T15 | 1053-1059 | Body_part | denotes | throat | http://purl.obolibrary.org/obo/UBERON_0000341 |
| T16 | 1137-1142 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T89 | 241-268 | Disease | denotes | respiratory tract infection | http://purl.obolibrary.org/obo/MONDO_0024355 |
| T90 | 259-268 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T91 | 320-331 | Disease | denotes | sore throat | http://purl.obolibrary.org/obo/MONDO_0002258 |
| T92 | 408-420 | Disease | denotes | constipation | http://purl.obolibrary.org/obo/MONDO_0002203 |
| T93 | 471-480 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T94 | 527-535 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T95 | 536-545 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T96 | 855-863 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T97 | 855-859 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T98 | 1048-1059 | Disease | denotes | Sore throat | http://purl.obolibrary.org/obo/MONDO_0002258 |
| T99 | 1657-1665 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T100 | 1657-1661 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T101 | 1708-1717 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T102 | 1735-1750 | Disease | denotes | viral infection | http://purl.obolibrary.org/obo/MONDO_0005108 |
| T103 | 1741-1750 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T37 | 38-39 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T38 | 70-71 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T39 | 140-141 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T40 | 730-732 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
| T41 | 738-740 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
| T42 | 753-757 | http://purl.obolibrary.org/obo/UBERON_0003101 | denotes | Male |
| T43 | 753-757 | http://www.ebi.ac.uk/efo/EFO_0000970 | denotes | Male |
| T44 | 758-762 | http://purl.obolibrary.org/obo/UBERON_0003101 | denotes | Male |
| T45 | 758-762 | http://www.ebi.ac.uk/efo/EFO_0000970 | denotes | Male |
| T46 | 763-769 | http://purl.obolibrary.org/obo/UBERON_0003100 | denotes | Female |
| T47 | 770-776 | http://purl.obolibrary.org/obo/UBERON_0003100 | denotes | Female |
| T48 | 777-783 | http://purl.obolibrary.org/obo/UBERON_0003100 | denotes | Female |
| T49 | 805-807 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
| T50 | 894-897 | http://purl.obolibrary.org/obo/CLO_0001382 | denotes | 4 8 |
| T51 | 1137-1142 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T52 | 1143-1147 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T53 | 1161-1166 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T54 | 1218-1223 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T55 | 1275-1280 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T56 | 1308-1316 | http://purl.obolibrary.org/obo/CL_0000576 | denotes | Monocyte |
| T57 | 1330-1335 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T58 | 1391-1396 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T59 | 1449-1454 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T60 | 1606-1608 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T61 | 1635-1637 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
| T62 | 1651-1655 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T6 | 1498-1505 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T7 | 1523-1525 | Chemical | denotes | NA | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T8 | 1532-1534 | Chemical | denotes | NA | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T9 | 1561-1564 | Chemical | denotes | AST | http://purl.obolibrary.org/obo/CHEBI_76649 |
| T10 | 1614-1617 | Chemical | denotes | AST | http://purl.obolibrary.org/obo/CHEBI_76649 |
| T11 | 1865-1879 | Chemical | denotes | corticosteroid | http://purl.obolibrary.org/obo/CHEBI_50858 |
| T12 | 1898-1900 | Chemical | denotes | NA | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T13 | 1921-1928 | Chemical | denotes | alanine | http://purl.obolibrary.org/obo/CHEBI_16449 |
| T14 | 1943-1946 | Chemical | denotes | AST | http://purl.obolibrary.org/obo/CHEBI_76649 |
| T15 | 1947-1956 | Chemical | denotes | aspartate | http://purl.obolibrary.org/obo/CHEBI_132943|http://purl.obolibrary.org/obo/CHEBI_29995|http://purl.obolibrary.org/obo/CHEBI_72314 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 1735-1750 | http://purl.obolibrary.org/obo/GO_0016032 | denotes | viral infection |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T23 | 40-45 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T24 | 54-60 | Phenotype | denotes | chills | http://purl.obolibrary.org/obo/HP_0025143 |
| T25 | 77-82 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T26 | 235-268 | Phenotype | denotes | upper respiratory tract infection | http://purl.obolibrary.org/obo/HP_0002788 |
| T27 | 305-310 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
| T28 | 320-331 | Phenotype | denotes | sore throat | http://purl.obolibrary.org/obo/HP_0033050 |
| T29 | 355-362 | Phenotype | denotes | fatigue | http://purl.obolibrary.org/obo/HP_0012378 |
| T30 | 408-420 | Phenotype | denotes | constipation | http://purl.obolibrary.org/obo/HP_0002019 |
| T31 | 471-480 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T32 | 536-545 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T33 | 964-969 | Phenotype | denotes | Fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T34 | 1002-1007 | Phenotype | denotes | Cough | http://purl.obolibrary.org/obo/HP_0012735 |
| T35 | 1024-1032 | Phenotype | denotes | Dyspnoea | http://purl.obolibrary.org/obo/HP_0002094 |
| T36 | 1048-1059 | Phenotype | denotes | Sore throat | http://purl.obolibrary.org/obo/HP_0033050 |
| T37 | 1076-1083 | Phenotype | denotes | Fatigue | http://purl.obolibrary.org/obo/HP_0012378 |
| T38 | 1708-1717 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T60 | 0-93 | Sentence | denotes | Four of the 5 patients presented with a fever without chills, one had a high fever (39.3 °C). |
| T61 | 94-169 | Sentence | denotes | Patients’ body temperatures fluctuated within a range from 36.2 to 39.3 °C. |
| T62 | 170-213 | Sentence | denotes | One patient showed normal body temperature. |
| T63 | 214-374 | Sentence | denotes | Other symptoms of an upper respiratory tract infection were also observed: one patient had cough, one had sore throat, all patients reported fatigue (Table 1 ). |
| T64 | 375-421 | Sentence | denotes | Additionally, one patient showed constipation. |
| T65 | 422-557 | Sentence | denotes | However, none of the 5 patients developed severe pneumonia, requiring mechanical ventilation, or died of COVID-19 pneumonia, as of Feb. |
| T66 | 558-567 | Sentence | denotes | 24, 2020. |
| T67 | 568-616 | Sentence | denotes | Table 1 Clinical and laboratory characteristics. |
| T68 | 617-691 | Sentence | denotes | Clinical characteristics Patient 1 Patient 2 Patient 3 Patient 4 Patient 5 |
| T69 | 692-714 | Sentence | denotes | Date of admission Jan. |
| T70 | 715-721 | Sentence | denotes | 3 Jan. |
| T71 | 722-729 | Sentence | denotes | 13 Jan. |
| T72 | 730-737 | Sentence | denotes | 27 Jan. |
| T73 | 738-745 | Sentence | denotes | 22 Jan. |
| T74 | 746-748 | Sentence | denotes | 20 |
| T75 | 749-783 | Sentence | denotes | Sex Male Male Female Female Female |
| T76 | 784-810 | Sentence | denotes | Age (years) 30 42 32 27 31 |
| T77 | 811-854 | Sentence | denotes | Epidemiological history Yes Yes Yes Yes Yes |
| T78 | 855-905 | Sentence | denotes | SARS-CoV-2 negative to positive (days) 4 8 17 15 9 |
| T79 | 906-944 | Sentence | denotes | Complications None None None None None |
| T80 | 945-963 | Sentence | denotes | Signs and symptoms |
| T81 | 964-1001 | Sentence | denotes | Fever on admission Yes Yes Yes No Yes |
| T82 | 1002-1023 | Sentence | denotes | Cough No Yes No No No |
| T83 | 1024-1047 | Sentence | denotes | Dyspnoea No No No No No |
| T84 | 1048-1075 | Sentence | denotes | Sore throat No No Yes No No |
| T85 | 1076-1103 | Sentence | denotes | Fatigue Yes Yes Yes Yes Yes |
| T86 | 1104-1130 | Sentence | denotes | Laboratory characteristics |
| T87 | 1131-1193 | Sentence | denotes | White blood cell count (× 109 cells per L) 5.9 7.1 4.4 6.5 4.5 |
| T88 | 1194-1250 | Sentence | denotes | Neutrophil count (× 109 cells per L) 3.5 4.5 1.8 4.1 2.6 |
| T89 | 1251-1307 | Sentence | denotes | Lymphocyte count (× 109 cells per L) 1.7 1.3 1.7 1.7 1.4 |
| T90 | 1308-1366 | Sentence | denotes | Monocyte count (× 109 cells per L) 0.63 1.24 0.75 0.58 0.4 |
| T91 | 1367-1425 | Sentence | denotes | Eosinophil count (× 109 cells per L) 0.13 0.05 0.02 0.09 0 |
| T92 | 1426-1486 | Sentence | denotes | Basophile count (× 109 cells per L) 0.02 0.04 0.03 0.02 0.02 |
| T93 | 1487-1534 | Sentence | denotes | C-reactive protein (mg/L) 18.7 23.7 NA <0.50 NA |
| T94 | 1535-1589 | Sentence | denotes | Elevated ALT (>45 U/L) or AST (>35 U/L) No No No No No |
| T95 | 1590-1613 | Sentence | denotes | ALT (U/L) 40 16 11 9 10 |
| T96 | 1614-1637 | Sentence | denotes | AST(U/L) 32 19 20 13 22 |
| T97 | 1638-1692 | Sentence | denotes | Confirmatory test (SARS-CoV-2 PCR) Yes Yes Yes Yes Yes |
| T98 | 1693-1717 | Sentence | denotes | CT evidence of pneumonia |
| T99 | 1718-1770 | Sentence | denotes | Typical signs of viral infection Yes Yes Yes Yes Yes |
| T100 | 1771-1780 | Sentence | denotes | Treatment |
| T101 | 1781-1818 | Sentence | denotes | Antiviral therapy Yes Yes Yes Yes Yes |
| T102 | 1819-1857 | Sentence | denotes | Antibiotic therapy Yes Yes Yes Yes Yes |
| T103 | 1858-1897 | Sentence | denotes | Use of corticosteroid Yes Yes No No Yes |
| T104 | 1898-1916 | Sentence | denotes | NA=not applicable. |
| T105 | 1917-1942 | Sentence | denotes | ALT=alanine transaminase. |
| T106 | 1943-1970 | Sentence | denotes | AST=aspartate transaminase. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 196 | 1487-1505 | Gene | denotes | C-reactive protein | Gene:1401 |
| 197 | 1561-1564 | Gene | denotes | AST | Gene:26503 |
| 198 | 1614-1617 | Gene | denotes | AST | Gene:26503 |
| 199 | 642-649 | Species | denotes | Patient | Tax:9606 |
| 200 | 652-659 | Species | denotes | Patient | Tax:9606 |
| 201 | 662-669 | Species | denotes | Patient | Tax:9606 |
| 202 | 672-679 | Species | denotes | Patient | Tax:9606 |
| 203 | 682-689 | Species | denotes | Patient | Tax:9606 |
| 204 | 855-865 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 205 | 1657-1667 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 206 | 955-969 | Disease | denotes | symptoms Fever | MESH:D051271 |
| 207 | 1002-1007 | Disease | denotes | Cough | MESH:D003371 |
| 208 | 1024-1032 | Disease | denotes | Dyspnoea | MESH:D004417 |
| 209 | 1076-1083 | Disease | denotes | Fatigue | MESH:D005221 |
| 210 | 1708-1717 | Disease | denotes | pneumonia | MESH:D011014 |
| 211 | 1735-1750 | Disease | denotes | viral infection | MESH:D001102 |
| 213 | 1943-1946 | Gene | denotes | AST | Gene:26503 |
| 231 | 14-22 | Species | denotes | patients | Tax:9606 |
| 232 | 94-102 | Species | denotes | Patients | Tax:9606 |
| 233 | 174-181 | Species | denotes | patient | Tax:9606 |
| 234 | 293-300 | Species | denotes | patient | Tax:9606 |
| 235 | 337-345 | Species | denotes | patients | Tax:9606 |
| 236 | 393-400 | Species | denotes | patient | Tax:9606 |
| 237 | 445-453 | Species | denotes | patients | Tax:9606 |
| 238 | 40-45 | Disease | denotes | fever | MESH:D005334 |
| 239 | 77-82 | Disease | denotes | fever | MESH:D005334 |
| 240 | 235-268 | Disease | denotes | upper respiratory tract infection | MESH:D012141 |
| 241 | 305-310 | Disease | denotes | cough | MESH:D003371 |
| 242 | 320-331 | Disease | denotes | sore throat | MESH:D010608 |
| 243 | 355-362 | Disease | denotes | fatigue | MESH:D005221 |
| 244 | 408-420 | Disease | denotes | constipation | MESH:D003248 |
| 245 | 471-480 | Disease | denotes | pneumonia | MESH:D011014 |
| 246 | 519-523 | Disease | denotes | died | MESH:D003643 |
| 247 | 527-545 | Disease | denotes | COVID-19 pneumonia | MESH:C000657245 |