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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 430-435 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T3 548-554 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T4 974-980 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T5 1069-1074 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T6 1136-1141 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T7 1219-1225 Body_part denotes Throat http://purl.org/sig/ont/fma/fma228738

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 430-435 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T3 548-554 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T4 974-980 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T5 1219-1225 Body_part denotes Throat http://purl.obolibrary.org/obo/UBERON_0000341

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T5 44-53 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T6 109-117 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 214-261 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T8 214-247 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T9 263-271 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 263-267 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T11 354-362 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T12 354-358 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T13 517-525 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T14 526-535 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T15 591-599 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 591-595 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T17 777-785 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T18 851-859 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T19 851-855 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T20 969-980 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T21 1033-1044 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T22 1287-1295 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T23 1287-1291 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T24 1455-1463 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T25 1455-1459 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T2 9-19 http://purl.obolibrary.org/obo/BFO_0000030 denotes Objectives
T3 430-435 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T4 736-737 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 1069-1074 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T6 1136-1141 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7 1276-1282 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T8 1331-1336 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 1376-1381 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 44-53 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 526-535 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 955-960 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T4 962-967 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T5 969-980 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T6 986-993 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T7 1033-1044 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T8 1098-1110 Phenotype denotes neutrophilia http://purl.obolibrary.org/obo/HP_0011897

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T7 0-7 Sentence denotes Summary
T8 9-19 Sentence denotes Objectives
T9 20-173 Sentence denotes Previous studies on the pneumonia outbreak caused by the 2019 novel coronavirus disease (COVID-19) were based on information from the general population.
T10 174-288 Sentence denotes However, limited data was available for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) reactivation.
T11 289-378 Sentence denotes This study aimed to evaluate the clinical characteristics of the SARS-CoV-2 reactivation.
T12 380-387 Sentence denotes Methods
T13 388-686 Sentence denotes Clinical records, laboratory results, and chest CT scans were retrospectively reviewed for 55 patients with laboratory-confirmed COVID-19 pneumonia (i.e., with throat swab samples that were positive for SARS-CoV-2) who were admitted to Zhongnan Hospital of Wuhan University, Wuhan, China, from Jan.
T14 687-696 Sentence denotes 8 to Feb.
T15 697-706 Sentence denotes 10, 2020.
T16 708-715 Sentence denotes Results
T17 716-875 Sentence denotes All 55 patients had a history of epidemiological exposure to COVID-19, and 5 (9%) patients who discharged from hospital presented with SARS-CoV-2 reactivation.
T18 876-994 Sentence denotes Among the 5 reactivated patients, other symptoms were also observed, including fever, cough, sore throat, and fatigue.
T19 995-1149 Sentence denotes One of the 5 patients had progressive lymphopenia (from 1.3 to 0.56 × 109 cells per L) and progressive neutrophilia (from 4.5 to 18.28 × 109 cells per L).
T20 1150-1218 Sentence denotes All 5 reactivated patients presented normal aminotransferase levels.
T21 1219-1337 Sentence denotes Throat swab samples from the 5 reactivated patients were tested for SARS-CoV-2, indicating all positive for the virus.
T22 1339-1350 Sentence denotes Conclusions
T23 1351-1542 Sentence denotes Findings from this small group of cases suggested that there was currently evidence for reactivation of SARS-CoV-2 and there might be no specific clinical characteristics to distinguish them.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
14 214-261 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
15 263-273 Species denotes SARS-CoV-2 Tax:2697049
16 354-364 Species denotes SARS-CoV-2 Tax:2697049
17 44-53 Disease denotes pneumonia MESH:D011014
18 77-107 Disease denotes 2019 novel coronavirus disease MESH:C000657245
19 109-117 Disease denotes COVID-19 MESH:C000657245
23 482-490 Species denotes patients Tax:9606
24 591-601 Species denotes SARS-CoV-2 Tax:2697049
25 517-535 Disease denotes COVID-19 pneumonia MESH:C000657245
41 723-731 Species denotes patients Tax:9606
42 798-806 Species denotes patients Tax:9606
43 851-861 Species denotes SARS-CoV-2 Tax:2697049
44 900-908 Species denotes patients Tax:9606
45 1008-1016 Species denotes patients Tax:9606
46 1168-1176 Species denotes patients Tax:9606
47 1262-1270 Species denotes patients Tax:9606
48 1287-1297 Species denotes SARS-CoV-2 Tax:2697049
49 777-785 Disease denotes COVID-19 MESH:C000657245
50 955-960 Disease denotes fever MESH:D005334
51 962-967 Disease denotes cough MESH:D003371
52 969-980 Disease denotes sore throat MESH:D010608
53 986-993 Disease denotes fatigue MESH:D005221
54 1033-1044 Disease denotes lymphopenia MESH:D008231
55 1098-1110 Disease denotes neutrophilia MESH:C563010
57 1455-1465 Species denotes SARS-CoV-2 Tax:2697049