PMC:7100515 / 38744-39718 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7100515","sourcedb":"PMC","sourceid":"7100515","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7100515","text":"Production of SARS-CoV-2 S pseudovirions and virus entry\nPseudovirions were produced by co-transfection 293T cells with psPAX2, pLenti-GFP, and plasmids encoding either SARS-CoV-2 S, SARS-CoV S, VSV-G, or empty vector by using polyetherimide (PEI). The supernatants were harvested at 40, 64 h post transfection, passed through 0.45 μm filter, and centrifuged at 800 × g for 5 min to remove cell debris. To transduce cells with pseudovirions, cells were seeded into 24-well plates and inoculated with 500 μl media containing pseudovirions. After overnight incubation, cells were fed with fresh media. About 40 h post inoculation, cells were lysed with 120 μl medium containing 50% Steady-glo (promega) at room temperature for 5 min. The transduction efficiency was measured by quantification of the luciferase activity using a Modulus II microplate reader (Turner Biosystems, Sunnyvale, CA, USA). All experiments were done in triplicates, and repeated at least twice or more.","divisions":[{"label":"title","span":{"begin":0,"end":56}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T344","span":{"begin":109,"end":114},"obj":"Body_part"},{"id":"T345","span":{"begin":390,"end":394},"obj":"Body_part"},{"id":"T346","span":{"begin":416,"end":421},"obj":"Body_part"},{"id":"T347","span":{"begin":442,"end":447},"obj":"Body_part"},{"id":"T348","span":{"begin":567,"end":572},"obj":"Body_part"},{"id":"T349","span":{"begin":629,"end":634},"obj":"Body_part"}],"attributes":[{"id":"A344","pred":"fma_id","subj":"T344","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A345","pred":"fma_id","subj":"T345","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A346","pred":"fma_id","subj":"T346","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A347","pred":"fma_id","subj":"T347","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A348","pred":"fma_id","subj":"T348","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A349","pred":"fma_id","subj":"T349","obj":"http://purl.org/sig/ont/fma/fma68646"},{"subj":"T344","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T345","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T346","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T347","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T348","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T349","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T347","span":{"begin":14,"end":22},"obj":"Disease"},{"id":"T348","span":{"begin":169,"end":177},"obj":"Disease"},{"id":"T349","span":{"begin":183,"end":191},"obj":"Disease"}],"attributes":[{"id":"A347","pred":"mondo_id","subj":"T347","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A348","pred":"mondo_id","subj":"T348","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A349","pred":"mondo_id","subj":"T349","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T347","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T348","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T349","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T876","span":{"begin":45,"end":50},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T877","span":{"begin":104,"end":108},"obj":"http://purl.obolibrary.org/obo/CLO_0050894"},{"id":"T878","span":{"begin":104,"end":108},"obj":"http://purl.obolibrary.org/obo/CLO_0051650"},{"id":"T879","span":{"begin":104,"end":108},"obj":"http://purl.obolibrary.org/obo/CLO_0052052"},{"id":"T880","span":{"begin":109,"end":114},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T881","span":{"begin":135,"end":138},"obj":"http://purl.obolibrary.org/obo/CLO_0053478"},{"id":"T882","span":{"begin":390,"end":394},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T883","span":{"begin":416,"end":421},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T884","span":{"begin":442,"end":447},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T885","span":{"begin":567,"end":572},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T886","span":{"begin":629,"end":634},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T887","span":{"begin":809,"end":817},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T888","span":{"begin":824,"end":825},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"attributes":[{"subj":"T876","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T877","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T878","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T879","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T880","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T881","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T882","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T883","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T884","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T885","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T886","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T887","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T888","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T330","span":{"begin":243,"end":246},"obj":"Chemical"},{"id":"T332","span":{"begin":834,"end":836},"obj":"Chemical"}],"attributes":[{"id":"A330","pred":"chebi_id","subj":"T330","obj":"http://purl.obolibrary.org/obo/CHEBI_144613"},{"id":"A331","pred":"chebi_id","subj":"T330","obj":"http://purl.obolibrary.org/obo/CHEBI_53231"},{"id":"A332","pred":"chebi_id","subj":"T332","obj":"http://purl.obolibrary.org/obo/CHEBI_74067"},{"subj":"T330","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T332","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T78","span":{"begin":736,"end":748},"obj":"http://purl.obolibrary.org/obo/GO_0009293"}],"attributes":[{"subj":"T78","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T278","span":{"begin":0,"end":56},"obj":"Sentence"},{"id":"T279","span":{"begin":57,"end":248},"obj":"Sentence"},{"id":"T280","span":{"begin":249,"end":402},"obj":"Sentence"},{"id":"T281","span":{"begin":403,"end":538},"obj":"Sentence"},{"id":"T282","span":{"begin":539,"end":599},"obj":"Sentence"},{"id":"T283","span":{"begin":600,"end":731},"obj":"Sentence"},{"id":"T284","span":{"begin":732,"end":895},"obj":"Sentence"},{"id":"T285","span":{"begin":896,"end":974},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T278","pred":"source","obj":"LitCovid-sentences"},{"subj":"T279","pred":"source","obj":"LitCovid-sentences"},{"subj":"T280","pred":"source","obj":"LitCovid-sentences"},{"subj":"T281","pred":"source","obj":"LitCovid-sentences"},{"subj":"T282","pred":"source","obj":"LitCovid-sentences"},{"subj":"T283","pred":"source","obj":"LitCovid-sentences"},{"subj":"T284","pred":"source","obj":"LitCovid-sentences"},{"subj":"T285","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"1588","span":{"begin":25,"end":26},"obj":"Gene"},{"id":"1589","span":{"begin":14,"end":24},"obj":"Species"},{"id":"1596","span":{"begin":180,"end":181},"obj":"Gene"},{"id":"1597","span":{"begin":169,"end":179},"obj":"Species"},{"id":"1598","span":{"begin":183,"end":191},"obj":"Species"},{"id":"1599","span":{"begin":227,"end":241},"obj":"Chemical"},{"id":"1600","span":{"begin":243,"end":246},"obj":"Chemical"},{"id":"1601","span":{"begin":104,"end":108},"obj":"CellLine"}],"attributes":[{"id":"A1588","pred":"tao:has_database_id","subj":"1588","obj":"Gene:43740568"},{"id":"A1589","pred":"tao:has_database_id","subj":"1589","obj":"Tax:2697049"},{"id":"A1596","pred":"tao:has_database_id","subj":"1596","obj":"Gene:43740568"},{"id":"A1597","pred":"tao:has_database_id","subj":"1597","obj":"Tax:2697049"},{"id":"A1598","pred":"tao:has_database_id","subj":"1598","obj":"Tax:694009"},{"id":"A1599","pred":"tao:has_database_id","subj":"1599","obj":"MESH:C433673"},{"id":"A1600","pred":"tao:has_database_id","subj":"1600","obj":"MESH:C433673"},{"id":"A1601","pred":"tao:has_database_id","subj":"1601","obj":"CVCL:0063"},{"subj":"1588","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1589","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1596","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1597","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1598","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1599","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1600","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1601","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#ebec93","default":true},{"id":"LitCovid-PD-MONDO","color":"#d393ec"},{"id":"LitCovid-PD-CLO","color":"#93ecb9"},{"id":"LitCovid-PD-CHEBI","color":"#ec9f93"},{"id":"LitCovid-PD-GO-BP","color":"#93a0ec"},{"id":"LitCovid-sentences","color":"#bbec93"},{"id":"LitCovid-PubTator","color":"#ec93d5"}]}]}}