PMC:7100515 / 35063-36105
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T289 | 85-97 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T290 | 130-141 | Body_part | denotes | amino acids | http://purl.org/sig/ont/fma/fma82739 |
| T291 | 194-198 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T292 | 299-311 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T293 | 324-336 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T294 | 347-359 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T295 | 433-436 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
| T296 | 482-489 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T297 | 523-534 | Body_part | denotes | amino acids | http://purl.org/sig/ont/fma/fma82739 |
| T298 | 536-538 | Body_part | denotes | aa | http://purl.org/sig/ont/fma/fma82739 |
| T299 | 552-559 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T300 | 593-595 | Body_part | denotes | aa | http://purl.org/sig/ont/fma/fma82739 |
| T301 | 656-663 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T338 | 72-80 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T339 | 288-296 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T340 | 471-479 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T752 | 183-193 | http://purl.obolibrary.org/obo/NCBITaxon_2759 | denotes | eukaryotic |
| T753 | 194-198 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T754 | 536-538 | http://purl.obolibrary.org/obo/CLO_0001627 | denotes | aa |
| T755 | 593-595 | http://purl.obolibrary.org/obo/CLO_0001627 | denotes | aa |
| T756 | 605-606 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T757 | 858-861 | http://purl.obolibrary.org/obo/CLO_0053478 | denotes | GFP |
| T758 | 905-908 | http://purl.obolibrary.org/obo/CLO_0053478 | denotes | GFP |
| T759 | 954-956 | http://purl.obolibrary.org/obo/CLO_0001022 | denotes | Li |
| T760 | 954-956 | http://purl.obolibrary.org/obo/CLO_0007314 | denotes | Li |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T268 | 85-97 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T269 | 130-141 | Chemical | denotes | amino acids | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T270 | 130-135 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T271 | 136-141 | Chemical | denotes | acids | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T272 | 299-311 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T273 | 324-336 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T274 | 347-359 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T275 | 433-436 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
| T276 | 482-489 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T277 | 523-534 | Chemical | denotes | amino acids | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T278 | 523-528 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T279 | 529-534 | Chemical | denotes | acids | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T280 | 536-538 | Chemical | denotes | aa | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T281 | 552-559 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T282 | 593-595 | Chemical | denotes | aa | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T283 | 656-663 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T284 | 842-844 | Chemical | denotes | MA | http://purl.obolibrary.org/obo/CHEBI_474859|http://purl.obolibrary.org/obo/CHEBI_73610|http://purl.obolibrary.org/obo/CHEBI_90325 |
| T287 | 954-956 | Chemical | denotes | Li | http://purl.obolibrary.org/obo/CHEBI_30145 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T257 | 0-269 | Sentence | denotes | Codon-optimized cDNA (sequence shown in Supplementary Table 2) encoding SARS-CoV-2 S glycoprotein (QHU36824.1) with C-terminal 19 amino acids deletion was synthesized and cloned into eukaryotic cell expression vector pCMV14-3×Flag between the Hind III and BamH I sites. |
| T258 | 270-735 | Sentence | denotes | Plasmids encoding SARS-CoV S glycoprotein, MERS-CoV S glycoprotein and MHV S glycoprotein (sequences shown in Supplementary Table 2) were constructed by inserting DNA fragment encoding codon-optimized SARS-CoV S protein (AAP13441.1) lacking the last 19 amino acids (aa), MERS-CoV S protein (AFS88936.1) lacking the last 16 aa but with a FLAG tag at the C terminus, or full-length MHV S protein (AAU06356.1) into pcDNA3.1between BamH I and Not I sites, respectively. |
| T259 | 736-846 | Sentence | denotes | The VSV-G encoding plasmid and lentiviral packaging plasmid psPAX2 were obtained from Addgene (Cambridge, MA). |
| T260 | 847-974 | Sentence | denotes | The pLenti-GFP lentiviral reporter plasmid that expresses GFP and luciferase was generously gifted by Fang Li, Duke University. |
| T261 | 975-1042 | Sentence | denotes | All primers used in this study are listed in Supplementary Table 1. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1460 | 83-84 | Gene | denotes | S | Gene:43740568 |
| 1461 | 72-82 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 1462 | 288-296 | Species | denotes | SARS-CoV | Tax:694009 |
| 1463 | 313-321 | Species | denotes | MERS-CoV | Tax:1335626 |
| 1464 | 341-346 | Species | denotes | MHV S | Tax:11145 |
| 1465 | 471-479 | Species | denotes | SARS-CoV | Tax:694009 |
| 1466 | 541-549 | Species | denotes | MERS-CoV | Tax:1335626 |
| 1467 | 650-655 | Species | denotes | MHV S | Tax:11145 |