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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 561-565 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T2 2184-2189 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 561-565 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T2 602-606 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T3 764-768 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T4 2184-2189 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T2 105-113 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 190-198 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 727-730 Disease denotes TSS http://purl.obolibrary.org/obo/MONDO_0001881
T5 829-832 Disease denotes TSS http://purl.obolibrary.org/obo/MONDO_0001881
T6 926-929 Disease denotes TSS http://purl.obolibrary.org/obo/MONDO_0001881
T7 1132-1135 Disease denotes TSS http://purl.obolibrary.org/obo/MONDO_0001881
T8 1225-1228 Disease denotes ICC http://purl.obolibrary.org/obo/MONDO_0003210
T9 1342-1345 Disease denotes TSS http://purl.obolibrary.org/obo/MONDO_0001881
T10 1397-1400 Disease denotes TSS http://purl.obolibrary.org/obo/MONDO_0001881
T11 1523-1531 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 1709-1717 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 1789-1792 Disease denotes ICC http://purl.obolibrary.org/obo/MONDO_0003210
T14 1841-1844 Disease denotes TSS http://purl.obolibrary.org/obo/MONDO_0001881
T15 1986-1989 Disease denotes TSS http://purl.obolibrary.org/obo/MONDO_0001881
T16 2062-2065 Disease denotes TSS http://purl.obolibrary.org/obo/MONDO_0001881
T17 2154-2162 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 0-10 http://purl.obolibrary.org/obo/BFO_0000030 denotes Objectives
T2 137-138 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 209-211 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T4 561-565 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T5 561-565 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T6 896-900 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T7 1001-1006 http://purl.obolibrary.org/obo/UBERON_0003101 denotes males
T8 1001-1006 http://www.ebi.ac.uk/efo/EFO_0000970 denotes males
T9 1014-1021 http://purl.obolibrary.org/obo/UBERON_0003100 denotes females
T10 1641-1644 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T11 1767-1770 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T12 2184-2189 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T13 2233-2234 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 1160-1165 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T2 1869-1874 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T3 0-10 Sentence denotes Objectives
T4 11-114 Sentence denotes To explore the relationship between the imaging manifestations and clinical classification of COVID-19.
T5 116-123 Sentence denotes Methods
T6 124-208 Sentence denotes We conducted a retrospective single-center study on patients with COVID-19 from Jan.
T7 209-225 Sentence denotes 18, 2020 to Feb.
T8 226-251 Sentence denotes 7, 2020 in Zhuhai, China.
T9 252-492 Sentence denotes Patients were divided into 3 types based on Chinese guideline: mild (patients with minimal symptoms and negative CT findings), common, and severe-critical (patients with positive CT findings and different extent of clinical manifestations).
T10 493-700 Sentence denotes CT visual quantitative evaluation was based on summing up the acute lung inflammatory lesions involving each lobe, which was scored as 0 (0%), 1 (1–25%), 2 (26–50%), 3 (51–75%), or 4 (76–100%), respectively.
T11 701-776 Sentence denotes The total severity score (TSS) was reached by summing the five lobe scores.
T12 777-824 Sentence denotes The consistency of two observers was evaluated.
T13 825-879 Sentence denotes The TSS was compared with the clinical classification.
T14 880-955 Sentence denotes ROC was used to test the diagnosis ability of TSS for severe-critical type.
T15 957-964 Sentence denotes Results
T16 965-1022 Sentence denotes This study included 78 patients, 38 males and 40 females.
T17 1023-1120 Sentence denotes There were 24 mild (30.8%), 46 common (59.0%), and 8 severe-critical (10.2%) cases, respectively.
T18 1121-1220 Sentence denotes The median TSS of severe-critical-type group was significantly higher than common type (p < 0.001).
T19 1221-1287 Sentence denotes The ICC value of the two observers was 0.976 (95% CI 0.962–0.985).
T20 1288-1392 Sentence denotes ROC analysis showed the area under the curve (AUC) of TSS for diagnosing severe-critical type was 0.918.
T21 1393-1458 Sentence denotes The TSS cutoff of 7.5 had 82.6% sensitivity and 100% specificity.
T22 1460-1471 Sentence denotes Conclusions
T23 1472-1604 Sentence denotes The proportion of clinical mild-type patients with COVID-19 was relatively high; CT was not suitable for independent screening tool.
T24 1605-1718 Sentence denotes The CT visual quantitative analysis has high consistency and can reflect the clinical classification of COVID-19.
T25 1720-1730 Sentence denotes Key Points
T26 1731-1829 Sentence denotes • CT visual quantitative evaluation has high consistency (ICC value of 0.976) among the observers.
T27 1830-1929 Sentence denotes The median TSS of severe-critical type group was significantly higher than common type (p < 0.001).
T28 1930-2057 Sentence denotes • ROC analysis showed the area under the curve (AUC) of TSS for diagnosing severe-critical type was 0.918 (95% CI 0.843–0.994).
T29 2058-2123 Sentence denotes The TSS cutoff of 7.5 had 82.6% sensitivity and 100% specificity.
T30 2124-2262 Sentence denotes • The proportion of confirmed COVID-19 patients with normal chest CT was relatively high (30.8%); CT was not a suitable screening modality

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
5 105-113 Disease denotes COVID-19 MESH:C000657245
11 176-184 Species denotes patients Tax:9606
12 252-260 Species denotes Patients Tax:9606
13 321-329 Species denotes patients Tax:9606
14 408-416 Species denotes patients Tax:9606
15 190-198 Disease denotes COVID-19 MESH:C000657245
17 988-996 Species denotes patients Tax:9606
21 1509-1517 Species denotes patients Tax:9606
22 1523-1531 Disease denotes COVID-19 MESH:C000657245
23 1709-1717 Disease denotes COVID-19 MESH:C000657245
26 2163-2171 Species denotes patients Tax:9606
27 2154-2162 Disease denotes COVID-19 MESH:C000657245