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PMC:7094172 / 4823-5755 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T167 39-47 SP_9 denotes MERS-CoV
T166 334-343 CHEBI:36357;CHEBI:36357 denotes molecules
T165 560-573 SO:0000984 denotes five-stranded

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T33 634-646 Body_part denotes right-handed http://purl.org/sig/ont/fma/fma9713
T34 807-815 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T21 50-53 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075
T23 119-122 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075
T25 330-333 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T31 80-82 http://purl.obolibrary.org/obo/CLO_0007860 denotes MR
T32 258-259 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 278-279 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T34 287-289 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T35 409-410 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T36 442-443 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T37 466-467 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 504-505 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 558-559 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 632-633 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 869-870 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T53 80-82 Chemical denotes MR http://purl.obolibrary.org/obo/CHEBI_74698
T54 128-130 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T55 334-343 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T56 807-815 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T32 0-131 Sentence denotes We determined the crystal structure of MERS-CoV N-NTD by molecular replacement (MR) using the structure of HCoV-OC43 N-NTD (PDB ID:
T33 132-291 Sentence denotes 4J3K) as the search model.24 The final structure was refined to R-factor and R-free values of 0.26 and 0.29, respectively, at a resolution of 2.6 Å (Table S1).
T34 292-445 Sentence denotes Each asymmetric unit contained four N-NTD molecules assembled into two identical dimers with an overall RMSD of 0.28 Å between the dimers (Figure S1A,B).
T35 446-535 Sentence denotes The monomers shared a similar structural core preceded by a flexible region (Figure S1D).
T36 536-827 Sentence denotes The core consisted of a five-stranded antiparallel β-sheet sandwiched between loops arranged in a right-handed, fist-shaped structure conserved among the CoVs.25 In our structure, however, the loop connecting strands β2 and β3 protruding out of the core into other CoV N proteins was absent.
T37 828-932 Sentence denotes Unlike the reported structures that have a monomeric conformation, our structure was atypically dimeric.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
93 39-47 Species denotes MERS-CoV Tax:1335626
94 107-116 Species denotes HCoV-OC43 Tax:31631
95 690-694 Species denotes CoVs Tax:11118
96 801-804 Species denotes CoV Tax:11118
97 328-333 Chemical denotes N-NTD

2_test

Id Subject Object Predicate Lexical cue
32105468-16338414-61929504 695-697 16338414 denotes 25