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PMC:7091888 / 4966-6821 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
220 1120-1121 Gene denotes S Gene:43740568
221 955-965 Species denotes SARS-CoV-2 Tax:2697049
222 1012-1022 Species denotes SARS-CoV-2 Tax:2697049
223 1024-1032 Species denotes SARS-CoV Tax:694009
224 1038-1046 Species denotes MERS-CoV Tax:1335626
225 1109-1119 Species denotes SARS-CoV-2 Tax:2697049
226 1136-1144 Species denotes SARS-CoV Tax:694009
227 1165-1173 Species denotes MERS-CoV Tax:1335626
228 1215-1225 Species denotes SARS-CoV-2 Tax:2697049
229 1230-1238 Species denotes SARS-CoV Tax:694009
230 1293-1303 Species denotes SARS-CoV-2 Tax:2697049
231 1305-1313 Species denotes SARS-CoV Tax:694009
232 1319-1327 Species denotes MERS-CoV Tax:1335626
233 1591-1601 Species denotes SARS-CoV-2 Tax:2697049
234 1675-1683 Species denotes SARS-CoV Tax:694009
235 1688-1696 Species denotes MERS-CoV Tax:1335626
236 1762-1766 Species denotes mice Tax:10090
237 1782-1790 Species denotes SARS-CoV Tax:694009
238 1047-1052 Gene denotes spike Gene:43740568
239 1542-1545 Chemical denotes SDS MESH:D012967
253 37-45 Species denotes SARS-CoV Tax:694009
254 50-60 Species denotes SARS-CoV-2 Tax:2697049
255 90-100 Species denotes SARS-CoV-2 Tax:2697049
256 346-355 Species denotes mammalian Tax:9606
257 465-473 Species denotes SARS-CoV Tax:694009
258 509-519 Species denotes SARS-CoV-2 Tax:2697049
259 596-606 Species denotes SARS-CoV-2 Tax:2697049
260 611-619 Species denotes SARS-CoV Tax:694009
261 644-652 Species denotes SARS-CoV Tax:694009
262 866-874 Species denotes SARS-CoV Tax:694009
263 904-914 Species denotes SARS-CoV-2 Tax:2697049
264 263-268 Species denotes human Tax:9606
265 361-365 CellLine denotes 293T CVCL:0063

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T20 133-140 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T21 190-197 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T22 335-342 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T23 356-360 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T24 388-392 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T25 419-426 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T26 491-498 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T27 524-531 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T28 919-926 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T29 1057-1065 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T30 1187-1197 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T31 1611-1618 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T94 37-45 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T95 37-41 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T96 50-58 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T97 50-54 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T98 90-98 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T99 90-94 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T100 465-473 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T101 465-469 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T102 509-517 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T103 509-513 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T104 596-604 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T105 596-600 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T106 611-619 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T107 611-615 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T108 644-652 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T109 644-648 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T110 866-874 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T111 866-870 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T112 904-912 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T113 904-908 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T114 955-963 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T115 955-959 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T116 1012-1020 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T117 1012-1016 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T118 1024-1032 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T119 1024-1028 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T120 1109-1117 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T121 1109-1113 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T122 1136-1144 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T123 1136-1140 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T124 1215-1223 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T125 1215-1219 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T126 1230-1238 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T127 1230-1234 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T128 1293-1301 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T129 1293-1297 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T130 1305-1313 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T131 1305-1309 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T132 1591-1599 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T133 1591-1595 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T134 1675-1683 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T135 1675-1679 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T136 1782-1790 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T137 1782-1786 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T43 172-173 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 244-245 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 257-259 http://purl.obolibrary.org/obo/CLO_0052676 denotes Fc
T46 263-268 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T47 356-360 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T48 361-365 http://purl.obolibrary.org/obo/CLO_0050894 denotes 293T
T49 361-365 http://purl.obolibrary.org/obo/CLO_0051650 denotes 293T
T50 361-365 http://purl.obolibrary.org/obo/CLO_0052052 denotes 293T
T51 388-392 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T52 427-428 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T53 971-972 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T54 1187-1206 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino acid residues
T55 1187-1206 http://purl.obolibrary.org/obo/PR_000036907 denotes amino acid residues
T56 1401-1407 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colons
T57 1552-1553 http://purl.obolibrary.org/obo/CLO_0001021 denotes b

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T27 133-140 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T28 190-197 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T29 335-342 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T30 419-426 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T31 491-498 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T32 524-531 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T33 919-926 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T34 1057-1065 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T35 1187-1197 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T36 1187-1192 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T37 1193-1197 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T38 1542-1545 Chemical denotes SDS http://purl.obolibrary.org/obo/CHEBI_8984
T39 1611-1618 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T18 0-151 Sentence denotes By alignment of the RBD sequences of SARS-CoV and SARS-CoV-2, we identified the region of SARS-CoV-2 RBD at residues 331 to 524 of S protein (Fig. 1a).
T19 152-453 Sentence denotes We then constructed a recombinant RBD protein containing codon-optimized RBD sequences with a C-terminal Fc of human IgG1 (hFc) using pFUSE-hIgG1-Fc2 expression vector, expressed the protein in mammalian cell 293T, and purified it from cell culture supernatant using protein A affinity chromatography.
T20 454-581 Sentence denotes Similar to SARS-CoV and MERS-CoV RBD protein controls, SARS-CoV-2 RBD protein had high expression with strong purity (Fig. 1b).
T21 582-927 Sentence denotes Notably, only SARS-CoV-2 and SARS-CoV RBDs were recognized by SARS-CoV RBD-specific, but not MERS-CoV RBD-specific, polyclonal antibodies (Fig. 1c), whereas only MERS-CoV RBD was recognized by MERS-CoV RBD-immunized polyclonal antibodies (Fig. 1d), suggesting the cross-reactivity of SARS-CoV RBD-specific antibodies with SARS-CoV-2 RBD protein.
T22 928-1066 Sentence denotes Fig. 1 Characterization of SARS-CoV-2 RBD. a Multiple sequence alignment of RBDs of SARS-CoV-2, SARS-CoV, and MERS-CoV spike (S) proteins.
T23 1067-1177 Sentence denotes GenBank accession numbers are QHR63250.1 (SARS-CoV-2 S), AY278488.2 (SARS-CoV S), and AFS88936.1 (MERS-CoV S).
T24 1178-1354 Sentence denotes Variable amino acid residues between SARS-CoV-2 and SARS-CoV are highlighted in cyan, and conserved residues among SARS-CoV-2, SARS-CoV, and MERS-CoV are highlighted in yellow.
T25 1355-1492 Sentence denotes Asterisks represent fully conserved residues, colons represent highly conserved residues, and periods represent lowly conserved residues.
T26 1493-1541 Sentence denotes The alignment was performed using Clustal Omega.
T27 1542-1606 Sentence denotes SDS-PAGE (b) and Western blot (c, d) analysis of SARS-CoV-2 RBD.
T28 1607-1674 Sentence denotes The protein molecular weight marker (kDa) is indicated on the left.
T29 1675-1728 Sentence denotes SARS-CoV and MERS-CoV RBDs were included as controls.
T30 1729-1855 Sentence denotes Antisera (1:3,000 dilution) from mice immunized with SARS-CoV RBD (c) and MERS-CoV RBD (d) were used for Western blot analysis