PMC:7091888 / 24514-26543
Annnotations
LitCovid-PubTator
{"project":"LitCovid-PubTator","denotations":[{"id":"1005","span":{"begin":113,"end":118},"obj":"Gene"},{"id":"1006","span":{"begin":160,"end":165},"obj":"Gene"},{"id":"1007","span":{"begin":167,"end":177},"obj":"Gene"},{"id":"1008","span":{"begin":269,"end":279},"obj":"Gene"},{"id":"1009","span":{"begin":703,"end":707},"obj":"Gene"},{"id":"1010","span":{"begin":939,"end":943},"obj":"Gene"},{"id":"1011","span":{"begin":87,"end":97},"obj":"Species"},{"id":"1012","span":{"begin":185,"end":193},"obj":"Species"},{"id":"1013","span":{"begin":198,"end":206},"obj":"Species"},{"id":"1014","span":{"begin":358,"end":368},"obj":"Species"},{"id":"1015","span":{"begin":370,"end":378},"obj":"Species"},{"id":"1016","span":{"begin":383,"end":391},"obj":"Species"},{"id":"1017","span":{"begin":697,"end":702},"obj":"Species"},{"id":"1018","span":{"begin":787,"end":797},"obj":"Species"},{"id":"1019","span":{"begin":799,"end":807},"obj":"Species"},{"id":"1020","span":{"begin":812,"end":820},"obj":"Species"},{"id":"1021","span":{"begin":933,"end":938},"obj":"Species"},{"id":"1022","span":{"begin":525,"end":530},"obj":"Species"},{"id":"1023","span":{"begin":502,"end":506},"obj":"Chemical"},{"id":"1024","span":{"begin":945,"end":950},"obj":"Chemical"},{"id":"1025","span":{"begin":131,"end":135},"obj":"CellLine"},{"id":"1026","span":{"begin":224,"end":228},"obj":"CellLine"},{"id":"1027","span":{"begin":751,"end":753},"obj":"CellLine"},{"id":"1035","span":{"begin":1022,"end":1027},"obj":"Gene"},{"id":"1036","span":{"begin":1050,"end":1060},"obj":"Gene"},{"id":"1037","span":{"begin":1065,"end":1070},"obj":"Gene"},{"id":"1038","span":{"begin":1093,"end":1103},"obj":"Gene"},{"id":"1039","span":{"begin":1240,"end":1245},"obj":"Gene"},{"id":"1040","span":{"begin":1250,"end":1255},"obj":"Gene"},{"id":"1041","span":{"begin":1339,"end":1343},"obj":"Chemical"},{"id":"1054","span":{"begin":1514,"end":1519},"obj":"Gene"},{"id":"1055","span":{"begin":1528,"end":1532},"obj":"Gene"},{"id":"1056","span":{"begin":1632,"end":1637},"obj":"Gene"},{"id":"1057","span":{"begin":1495,"end":1505},"obj":"Species"},{"id":"1058","span":{"begin":1732,"end":1742},"obj":"Species"},{"id":"1059","span":{"begin":1813,"end":1821},"obj":"Species"},{"id":"1060","span":{"begin":1826,"end":1834},"obj":"Species"},{"id":"1061","span":{"begin":1913,"end":1918},"obj":"Species"},{"id":"1062","span":{"begin":1665,"end":1682},"obj":"Chemical"},{"id":"1063","span":{"begin":1887,"end":1891},"obj":"Chemical"},{"id":"1064","span":{"begin":1578,"end":1582},"obj":"CellLine"},{"id":"1065","span":{"begin":1599,"end":1603},"obj":"CellLine"}],"attributes":[{"id":"A1005","pred":"tao:has_database_id","subj":"1005","obj":"Gene:59272"},{"id":"A1006","pred":"tao:has_database_id","subj":"1006","obj":"Gene:59272"},{"id":"A1007","pred":"tao:has_database_id","subj":"1007","obj":"Gene:59272"},{"id":"A1008","pred":"tao:has_database_id","subj":"1008","obj":"Gene:1803"},{"id":"A1009","pred":"tao:has_database_id","subj":"1009","obj":"Gene:59272"},{"id":"A1010","pred":"tao:has_database_id","subj":"1010","obj":"Gene:1803"},{"id":"A1011","pred":"tao:has_database_id","subj":"1011","obj":"Tax:2697049"},{"id":"A1012","pred":"tao:has_database_id","subj":"1012","obj":"Tax:694009"},{"id":"A1013","pred":"tao:has_database_id","subj":"1013","obj":"Tax:1335626"},{"id":"A1014","pred":"tao:has_database_id","subj":"1014","obj":"Tax:2697049"},{"id":"A1015","pred":"tao:has_database_id","subj":"1015","obj":"Tax:694009"},{"id":"A1016","pred":"tao:has_database_id","subj":"1016","obj":"Tax:1335626"},{"id":"A1017","pred":"tao:has_database_id","subj":"1017","obj":"Tax:9606"},{"id":"A1018","pred":"tao:has_database_id","subj":"1018","obj":"Tax:2697049"},{"id":"A1019","pred":"tao:has_database_id","subj":"1019","obj":"Tax:694009"},{"id":"A1020","pred":"tao:has_database_id","subj":"1020","obj":"Tax:1335626"},{"id":"A1021","pred":"tao:has_database_id","subj":"1021","obj":"Tax:9606"},{"id":"A1022","pred":"tao:has_database_id","subj":"1022","obj":"Tax:9606"},{"id":"A1023","pred":"tao:has_database_id","subj":"1023","obj":"MESH:D016650"},{"id":"A1025","pred":"tao:has_database_id","subj":"1025","obj":"CVCL:0063"},{"id":"A1026","pred":"tao:has_database_id","subj":"1026","obj":"CVCL:0063"},{"id":"A1027","pred":"tao:has_database_id","subj":"1027","obj":"CVCL:U508"},{"id":"A1035","pred":"tao:has_database_id","subj":"1035","obj":"Gene:59272"},{"id":"A1036","pred":"tao:has_database_id","subj":"1036","obj":"Gene:59272"},{"id":"A1037","pred":"tao:has_database_id","subj":"1037","obj":"Gene:1803"},{"id":"A1038","pred":"tao:has_database_id","subj":"1038","obj":"Gene:1803"},{"id":"A1039","pred":"tao:has_database_id","subj":"1039","obj":"Gene:59272"},{"id":"A1040","pred":"tao:has_database_id","subj":"1040","obj":"Gene:1803"},{"id":"A1041","pred":"tao:has_database_id","subj":"1041","obj":"MESH:D016650"},{"id":"A1054","pred":"tao:has_database_id","subj":"1054","obj":"Gene:59272"},{"id":"A1055","pred":"tao:has_database_id","subj":"1055","obj":"Gene:59272"},{"id":"A1056","pred":"tao:has_database_id","subj":"1056","obj":"Gene:59272"},{"id":"A1057","pred":"tao:has_database_id","subj":"1057","obj":"Tax:2697049"},{"id":"A1058","pred":"tao:has_database_id","subj":"1058","obj":"Tax:2697049"},{"id":"A1059","pred":"tao:has_database_id","subj":"1059","obj":"Tax:694009"},{"id":"A1060","pred":"tao:has_database_id","subj":"1060","obj":"Tax:1335626"},{"id":"A1061","pred":"tao:has_database_id","subj":"1061","obj":"Tax:9606"},{"id":"A1062","pred":"tao:has_database_id","subj":"1062","obj":"MESH:C020243"},{"id":"A1063","pred":"tao:has_database_id","subj":"1063","obj":"MESH:D016650"},{"id":"A1064","pred":"tao:has_database_id","subj":"1064","obj":"CVCL:0063"},{"id":"A1065","pred":"tao:has_database_id","subj":"1065","obj":"CVCL:0063"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Flow cytometry analysis\nFlow cytometry analysis was performed to detect the binding of SARS-CoV-2 RBD protein to hACE2 receptor in 293T cells stably expressing hACE2 (hACE2/293T).26,32 SARS-CoV and MERS-CoV RBDs, as well as 293T cells stably expressing hDPP4 receptor (hDPP4/293T), were used as controls. Briefly, cells were incubated with respective RBD of SARS-CoV-2, SARS-CoV, or MERS-CoV containing a C-terminal hFc at 20 μg/ml for 30 min at room temperature, which was followed by incubation with FITC-labeled goat anti-human IgG antibody (1:500; Thermo Fisher Scientific) for 30 min and analyzed by flow cytometry. The blockage of RBD-receptor binding was performed by incubation of soluble human ACE2 (sACE2; 5 μg/ml; R\u0026D Systems, Minneapolis, MN) receptor with respective RBD of SARS-CoV-2, SARS-CoV, or MERS-CoV (20 μg/ml), followed by the same procedure as that described above. hIgG-Fc protein (hFc: 20 μg/ml), or soluble human DPP4 (sDPP4; 5 μg/ml; R\u0026D Systems) receptor, was included as control.\nDetection of hACE2 protein expression in hACE2/293T, or hDPP4 protein expression in hDPP4/293T, stable cell lines was performed by flow cytometry analysis, as described above, except that the cells were sequentially incubated with hACE2- or hDPP4-specific goat antibody (0.5 μg/ml; R\u0026D Systems) at room temperature for 20 min and FITC-labeled anti-goat IgG antibody (1:200; Abcam, Cambridge, MA) for 1 h at 4 °C.\nFlow cytometry analysis was also performed to detect the binding between SARS-CoV-2 RBD and hACE2, or bat-ACE2 (bACE2), receptor in transiently transfected 293T cells. Briefly, 293T cells were transfected with hACE2 or bACE2 plasmid using the calcium phosphate method, and 48 h later, they were incubated with SARS-CoV-2 RBD protein at various concentrations for 30 min at room temperature. SARS-CoV and MERS-CoV RBDs were included as controls. After staining with FITC-conjugated goat anti-human IgG antibody (1:500; Thermo Fisher Scientific), the mixture was analyzed by flow cytometry as described above."}
LitCovid-PD-FMA-UBERON
{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T196","span":{"begin":102,"end":109},"obj":"Body_part"},{"id":"T197","span":{"begin":136,"end":141},"obj":"Body_part"},{"id":"T198","span":{"begin":229,"end":234},"obj":"Body_part"},{"id":"T199","span":{"begin":314,"end":319},"obj":"Body_part"},{"id":"T200","span":{"begin":531,"end":534},"obj":"Body_part"},{"id":"T201","span":{"begin":535,"end":543},"obj":"Body_part"},{"id":"T202","span":{"begin":897,"end":904},"obj":"Body_part"},{"id":"T203","span":{"begin":1028,"end":1035},"obj":"Body_part"},{"id":"T204","span":{"begin":1071,"end":1078},"obj":"Body_part"},{"id":"T205","span":{"begin":1112,"end":1116},"obj":"Body_part"},{"id":"T206","span":{"begin":1201,"end":1206},"obj":"Body_part"},{"id":"T207","span":{"begin":1270,"end":1278},"obj":"Body_part"},{"id":"T208","span":{"begin":1362,"end":1365},"obj":"Body_part"},{"id":"T209","span":{"begin":1366,"end":1374},"obj":"Body_part"},{"id":"T210","span":{"begin":1583,"end":1588},"obj":"Body_part"},{"id":"T211","span":{"begin":1604,"end":1609},"obj":"Body_part"},{"id":"T212","span":{"begin":1747,"end":1754},"obj":"Body_part"},{"id":"T213","span":{"begin":1919,"end":1922},"obj":"Body_part"},{"id":"T214","span":{"begin":1923,"end":1931},"obj":"Body_part"}],"attributes":[{"id":"A196","pred":"fma_id","subj":"T196","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A197","pred":"fma_id","subj":"T197","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A198","pred":"fma_id","subj":"T198","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A199","pred":"fma_id","subj":"T199","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A200","pred":"fma_id","subj":"T200","obj":"http://purl.org/sig/ont/fma/fma62872"},{"id":"A201","pred":"fma_id","subj":"T201","obj":"http://purl.org/sig/ont/fma/fma62871"},{"id":"A202","pred":"fma_id","subj":"T202","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A203","pred":"fma_id","subj":"T203","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A204","pred":"fma_id","subj":"T204","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A205","pred":"fma_id","subj":"T205","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A206","pred":"fma_id","subj":"T206","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A207","pred":"fma_id","subj":"T207","obj":"http://purl.org/sig/ont/fma/fma62871"},{"id":"A208","pred":"fma_id","subj":"T208","obj":"http://purl.org/sig/ont/fma/fma62872"},{"id":"A209","pred":"fma_id","subj":"T209","obj":"http://purl.org/sig/ont/fma/fma62871"},{"id":"A210","pred":"fma_id","subj":"T210","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A211","pred":"fma_id","subj":"T211","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A212","pred":"fma_id","subj":"T212","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A213","pred":"fma_id","subj":"T213","obj":"http://purl.org/sig/ont/fma/fma62872"},{"id":"A214","pred":"fma_id","subj":"T214","obj":"http://purl.org/sig/ont/fma/fma62871"}],"text":"Flow cytometry analysis\nFlow cytometry analysis was performed to detect the binding of SARS-CoV-2 RBD protein to hACE2 receptor in 293T cells stably expressing hACE2 (hACE2/293T).26,32 SARS-CoV and MERS-CoV RBDs, as well as 293T cells stably expressing hDPP4 receptor (hDPP4/293T), were used as controls. Briefly, cells were incubated with respective RBD of SARS-CoV-2, SARS-CoV, or MERS-CoV containing a C-terminal hFc at 20 μg/ml for 30 min at room temperature, which was followed by incubation with FITC-labeled goat anti-human IgG antibody (1:500; Thermo Fisher Scientific) for 30 min and analyzed by flow cytometry. The blockage of RBD-receptor binding was performed by incubation of soluble human ACE2 (sACE2; 5 μg/ml; R\u0026D Systems, Minneapolis, MN) receptor with respective RBD of SARS-CoV-2, SARS-CoV, or MERS-CoV (20 μg/ml), followed by the same procedure as that described above. hIgG-Fc protein (hFc: 20 μg/ml), or soluble human DPP4 (sDPP4; 5 μg/ml; R\u0026D Systems) receptor, was included as control.\nDetection of hACE2 protein expression in hACE2/293T, or hDPP4 protein expression in hDPP4/293T, stable cell lines was performed by flow cytometry analysis, as described above, except that the cells were sequentially incubated with hACE2- or hDPP4-specific goat antibody (0.5 μg/ml; R\u0026D Systems) at room temperature for 20 min and FITC-labeled anti-goat IgG antibody (1:200; Abcam, Cambridge, MA) for 1 h at 4 °C.\nFlow cytometry analysis was also performed to detect the binding between SARS-CoV-2 RBD and hACE2, or bat-ACE2 (bACE2), receptor in transiently transfected 293T cells. Briefly, 293T cells were transfected with hACE2 or bACE2 plasmid using the calcium phosphate method, and 48 h later, they were incubated with SARS-CoV-2 RBD protein at various concentrations for 30 min at room temperature. SARS-CoV and MERS-CoV RBDs were included as controls. After staining with FITC-conjugated goat anti-human IgG antibody (1:500; Thermo Fisher Scientific), the mixture was analyzed by flow cytometry as described above."}
LitCovid-PD-MONDO
{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T448","span":{"begin":87,"end":95},"obj":"Disease"},{"id":"T449","span":{"begin":87,"end":91},"obj":"Disease"},{"id":"T450","span":{"begin":185,"end":193},"obj":"Disease"},{"id":"T451","span":{"begin":185,"end":189},"obj":"Disease"},{"id":"T452","span":{"begin":358,"end":366},"obj":"Disease"},{"id":"T453","span":{"begin":358,"end":362},"obj":"Disease"},{"id":"T454","span":{"begin":370,"end":378},"obj":"Disease"},{"id":"T455","span":{"begin":370,"end":374},"obj":"Disease"},{"id":"T456","span":{"begin":787,"end":795},"obj":"Disease"},{"id":"T457","span":{"begin":787,"end":791},"obj":"Disease"},{"id":"T458","span":{"begin":799,"end":807},"obj":"Disease"},{"id":"T459","span":{"begin":799,"end":803},"obj":"Disease"},{"id":"T460","span":{"begin":1495,"end":1503},"obj":"Disease"},{"id":"T461","span":{"begin":1495,"end":1499},"obj":"Disease"},{"id":"T462","span":{"begin":1732,"end":1740},"obj":"Disease"},{"id":"T463","span":{"begin":1732,"end":1736},"obj":"Disease"},{"id":"T464","span":{"begin":1813,"end":1821},"obj":"Disease"},{"id":"T465","span":{"begin":1813,"end":1817},"obj":"Disease"}],"attributes":[{"id":"A448","pred":"mondo_id","subj":"T448","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A449","pred":"mondo_id","subj":"T449","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A450","pred":"mondo_id","subj":"T450","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A451","pred":"mondo_id","subj":"T451","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A452","pred":"mondo_id","subj":"T452","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A453","pred":"mondo_id","subj":"T453","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A454","pred":"mondo_id","subj":"T454","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A455","pred":"mondo_id","subj":"T455","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A456","pred":"mondo_id","subj":"T456","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A457","pred":"mondo_id","subj":"T457","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A458","pred":"mondo_id","subj":"T458","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A459","pred":"mondo_id","subj":"T459","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A460","pred":"mondo_id","subj":"T460","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A461","pred":"mondo_id","subj":"T461","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A462","pred":"mondo_id","subj":"T462","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A463","pred":"mondo_id","subj":"T463","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A464","pred":"mondo_id","subj":"T464","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A465","pred":"mondo_id","subj":"T465","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Flow cytometry analysis\nFlow cytometry analysis was performed to detect the binding of SARS-CoV-2 RBD protein to hACE2 receptor in 293T cells stably expressing hACE2 (hACE2/293T).26,32 SARS-CoV and MERS-CoV RBDs, as well as 293T cells stably expressing hDPP4 receptor (hDPP4/293T), were used as controls. Briefly, cells were incubated with respective RBD of SARS-CoV-2, SARS-CoV, or MERS-CoV containing a C-terminal hFc at 20 μg/ml for 30 min at room temperature, which was followed by incubation with FITC-labeled goat anti-human IgG antibody (1:500; Thermo Fisher Scientific) for 30 min and analyzed by flow cytometry. The blockage of RBD-receptor binding was performed by incubation of soluble human ACE2 (sACE2; 5 μg/ml; R\u0026D Systems, Minneapolis, MN) receptor with respective RBD of SARS-CoV-2, SARS-CoV, or MERS-CoV (20 μg/ml), followed by the same procedure as that described above. hIgG-Fc protein (hFc: 20 μg/ml), or soluble human DPP4 (sDPP4; 5 μg/ml; R\u0026D Systems) receptor, was included as control.\nDetection of hACE2 protein expression in hACE2/293T, or hDPP4 protein expression in hDPP4/293T, stable cell lines was performed by flow cytometry analysis, as described above, except that the cells were sequentially incubated with hACE2- or hDPP4-specific goat antibody (0.5 μg/ml; R\u0026D Systems) at room temperature for 20 min and FITC-labeled anti-goat IgG antibody (1:200; Abcam, Cambridge, MA) for 1 h at 4 °C.\nFlow cytometry analysis was also performed to detect the binding between SARS-CoV-2 RBD and hACE2, or bat-ACE2 (bACE2), receptor in transiently transfected 293T cells. Briefly, 293T cells were transfected with hACE2 or bACE2 plasmid using the calcium phosphate method, and 48 h later, they were incubated with SARS-CoV-2 RBD protein at various concentrations for 30 min at room temperature. SARS-CoV and MERS-CoV RBDs were included as controls. After staining with FITC-conjugated goat anti-human IgG antibody (1:500; Thermo Fisher Scientific), the mixture was analyzed by flow cytometry as described above."}
LitCovid-PD-CLO
{"project":"LitCovid-PD-CLO","denotations":[{"id":"T413","span":{"begin":131,"end":135},"obj":"http://purl.obolibrary.org/obo/CLO_0050894"},{"id":"T414","span":{"begin":131,"end":135},"obj":"http://purl.obolibrary.org/obo/CLO_0051650"},{"id":"T415","span":{"begin":131,"end":135},"obj":"http://purl.obolibrary.org/obo/CLO_0052052"},{"id":"T416","span":{"begin":136,"end":141},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T417","span":{"begin":173,"end":177},"obj":"http://purl.obolibrary.org/obo/CLO_0050894"},{"id":"T418","span":{"begin":173,"end":177},"obj":"http://purl.obolibrary.org/obo/CLO_0051650"},{"id":"T419","span":{"begin":173,"end":177},"obj":"http://purl.obolibrary.org/obo/CLO_0052052"},{"id":"T420","span":{"begin":224,"end":228},"obj":"http://purl.obolibrary.org/obo/CLO_0050894"},{"id":"T421","span":{"begin":224,"end":228},"obj":"http://purl.obolibrary.org/obo/CLO_0051650"},{"id":"T422","span":{"begin":224,"end":228},"obj":"http://purl.obolibrary.org/obo/CLO_0052052"},{"id":"T423","span":{"begin":229,"end":234},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T424","span":{"begin":275,"end":279},"obj":"http://purl.obolibrary.org/obo/CLO_0050894"},{"id":"T425","span":{"begin":275,"end":279},"obj":"http://purl.obolibrary.org/obo/CLO_0051650"},{"id":"T426","span":{"begin":275,"end":279},"obj":"http://purl.obolibrary.org/obo/CLO_0052052"},{"id":"T427","span":{"begin":314,"end":319},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T428","span":{"begin":403,"end":404},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T429","span":{"begin":507,"end":514},"obj":"http://purl.obolibrary.org/obo/CLO_0007225"},{"id":"T430","span":{"begin":515,"end":519},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9925"},{"id":"T431","span":{"begin":525,"end":534},"obj":"http://purl.obolibrary.org/obo/CLO_0053695"},{"id":"T432","span":{"begin":697,"end":702},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T433","span":{"begin":725,"end":728},"obj":"http://purl.obolibrary.org/obo/CLO_0008693"},{"id":"T434","span":{"begin":725,"end":728},"obj":"http://purl.obolibrary.org/obo/CLO_0008770"},{"id":"T435","span":{"begin":894,"end":896},"obj":"http://purl.obolibrary.org/obo/CLO_0052676"},{"id":"T436","span":{"begin":933,"end":938},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T437","span":{"begin":961,"end":964},"obj":"http://purl.obolibrary.org/obo/CLO_0008693"},{"id":"T438","span":{"begin":961,"end":964},"obj":"http://purl.obolibrary.org/obo/CLO_0008770"},{"id":"T439","span":{"begin":1056,"end":1060},"obj":"http://purl.obolibrary.org/obo/CLO_0050894"},{"id":"T440","span":{"begin":1056,"end":1060},"obj":"http://purl.obolibrary.org/obo/CLO_0051650"},{"id":"T441","span":{"begin":1056,"end":1060},"obj":"http://purl.obolibrary.org/obo/CLO_0052052"},{"id":"T442","span":{"begin":1099,"end":1103},"obj":"http://purl.obolibrary.org/obo/CLO_0050894"},{"id":"T443","span":{"begin":1099,"end":1103},"obj":"http://purl.obolibrary.org/obo/CLO_0051650"},{"id":"T444","span":{"begin":1099,"end":1103},"obj":"http://purl.obolibrary.org/obo/CLO_0052052"},{"id":"T445","span":{"begin":1112,"end":1122},"obj":"http://purl.obolibrary.org/obo/CLO_0000031"},{"id":"T446","span":{"begin":1201,"end":1206},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T447","span":{"begin":1265,"end":1269},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9925"},{"id":"T448","span":{"begin":1291,"end":1294},"obj":"http://purl.obolibrary.org/obo/CLO_0008693"},{"id":"T449","span":{"begin":1291,"end":1294},"obj":"http://purl.obolibrary.org/obo/CLO_0008770"},{"id":"T450","span":{"begin":1344,"end":1351},"obj":"http://purl.obolibrary.org/obo/CLO_0007225"},{"id":"T451","span":{"begin":1357,"end":1361},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9925"},{"id":"T452","span":{"begin":1416,"end":1420},"obj":"http://purl.obolibrary.org/obo/CLO_0001387"},{"id":"T453","span":{"begin":1524,"end":1527},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T454","span":{"begin":1578,"end":1582},"obj":"http://purl.obolibrary.org/obo/CLO_0050894"},{"id":"T455","span":{"begin":1578,"end":1582},"obj":"http://purl.obolibrary.org/obo/CLO_0051650"},{"id":"T456","span":{"begin":1578,"end":1582},"obj":"http://purl.obolibrary.org/obo/CLO_0052052"},{"id":"T457","span":{"begin":1583,"end":1588},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T458","span":{"begin":1599,"end":1603},"obj":"http://purl.obolibrary.org/obo/CLO_0050894"},{"id":"T459","span":{"begin":1599,"end":1603},"obj":"http://purl.obolibrary.org/obo/CLO_0051650"},{"id":"T460","span":{"begin":1599,"end":1603},"obj":"http://purl.obolibrary.org/obo/CLO_0052052"},{"id":"T461","span":{"begin":1604,"end":1609},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T462","span":{"begin":1695,"end":1697},"obj":"http://purl.obolibrary.org/obo/CLO_0001382"},{"id":"T463","span":{"begin":1903,"end":1907},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9925"},{"id":"T464","span":{"begin":1913,"end":1922},"obj":"http://purl.obolibrary.org/obo/CLO_0053695"}],"text":"Flow cytometry analysis\nFlow cytometry analysis was performed to detect the binding of SARS-CoV-2 RBD protein to hACE2 receptor in 293T cells stably expressing hACE2 (hACE2/293T).26,32 SARS-CoV and MERS-CoV RBDs, as well as 293T cells stably expressing hDPP4 receptor (hDPP4/293T), were used as controls. Briefly, cells were incubated with respective RBD of SARS-CoV-2, SARS-CoV, or MERS-CoV containing a C-terminal hFc at 20 μg/ml for 30 min at room temperature, which was followed by incubation with FITC-labeled goat anti-human IgG antibody (1:500; Thermo Fisher Scientific) for 30 min and analyzed by flow cytometry. The blockage of RBD-receptor binding was performed by incubation of soluble human ACE2 (sACE2; 5 μg/ml; R\u0026D Systems, Minneapolis, MN) receptor with respective RBD of SARS-CoV-2, SARS-CoV, or MERS-CoV (20 μg/ml), followed by the same procedure as that described above. hIgG-Fc protein (hFc: 20 μg/ml), or soluble human DPP4 (sDPP4; 5 μg/ml; R\u0026D Systems) receptor, was included as control.\nDetection of hACE2 protein expression in hACE2/293T, or hDPP4 protein expression in hDPP4/293T, stable cell lines was performed by flow cytometry analysis, as described above, except that the cells were sequentially incubated with hACE2- or hDPP4-specific goat antibody (0.5 μg/ml; R\u0026D Systems) at room temperature for 20 min and FITC-labeled anti-goat IgG antibody (1:200; Abcam, Cambridge, MA) for 1 h at 4 °C.\nFlow cytometry analysis was also performed to detect the binding between SARS-CoV-2 RBD and hACE2, or bat-ACE2 (bACE2), receptor in transiently transfected 293T cells. Briefly, 293T cells were transfected with hACE2 or bACE2 plasmid using the calcium phosphate method, and 48 h later, they were incubated with SARS-CoV-2 RBD protein at various concentrations for 30 min at room temperature. SARS-CoV and MERS-CoV RBDs were included as controls. After staining with FITC-conjugated goat anti-human IgG antibody (1:500; Thermo Fisher Scientific), the mixture was analyzed by flow cytometry as described above."}
LitCovid-PD-CHEBI
{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T124","span":{"begin":102,"end":109},"obj":"Chemical"},{"id":"T125","span":{"begin":502,"end":506},"obj":"Chemical"},{"id":"T126","span":{"begin":751,"end":753},"obj":"Chemical"},{"id":"T127","span":{"begin":897,"end":904},"obj":"Chemical"},{"id":"T128","span":{"begin":1028,"end":1035},"obj":"Chemical"},{"id":"T129","span":{"begin":1071,"end":1078},"obj":"Chemical"},{"id":"T130","span":{"begin":1339,"end":1343},"obj":"Chemical"},{"id":"T131","span":{"begin":1401,"end":1403},"obj":"Chemical"},{"id":"T134","span":{"begin":1665,"end":1682},"obj":"Chemical"},{"id":"T136","span":{"begin":1665,"end":1672},"obj":"Chemical"},{"id":"T138","span":{"begin":1673,"end":1682},"obj":"Chemical"},{"id":"T142","span":{"begin":1747,"end":1754},"obj":"Chemical"},{"id":"T143","span":{"begin":1887,"end":1891},"obj":"Chemical"},{"id":"T144","span":{"begin":1971,"end":1978},"obj":"Chemical"}],"attributes":[{"id":"A124","pred":"chebi_id","subj":"T124","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A125","pred":"chebi_id","subj":"T125","obj":"http://purl.obolibrary.org/obo/CHEBI_37926"},{"id":"A126","pred":"chebi_id","subj":"T126","obj":"http://purl.obolibrary.org/obo/CHEBI_141442"},{"id":"A127","pred":"chebi_id","subj":"T127","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A128","pred":"chebi_id","subj":"T128","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A129","pred":"chebi_id","subj":"T129","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A130","pred":"chebi_id","subj":"T130","obj":"http://purl.obolibrary.org/obo/CHEBI_37926"},{"id":"A131","pred":"chebi_id","subj":"T131","obj":"http://purl.obolibrary.org/obo/CHEBI_474859"},{"id":"A132","pred":"chebi_id","subj":"T131","obj":"http://purl.obolibrary.org/obo/CHEBI_73610"},{"id":"A133","pred":"chebi_id","subj":"T131","obj":"http://purl.obolibrary.org/obo/CHEBI_90325"},{"id":"A134","pred":"chebi_id","subj":"T134","obj":"http://purl.obolibrary.org/obo/CHEBI_77635"},{"id":"A135","pred":"chebi_id","subj":"T134","obj":"http://purl.obolibrary.org/obo/CHEBI_9679"},{"id":"A136","pred":"chebi_id","subj":"T136","obj":"http://purl.obolibrary.org/obo/CHEBI_22984"},{"id":"A137","pred":"chebi_id","subj":"T136","obj":"http://purl.obolibrary.org/obo/CHEBI_29320"},{"id":"A138","pred":"chebi_id","subj":"T138","obj":"http://purl.obolibrary.org/obo/CHEBI_18367"},{"id":"A139","pred":"chebi_id","subj":"T138","obj":"http://purl.obolibrary.org/obo/CHEBI_26020"},{"id":"A140","pred":"chebi_id","subj":"T138","obj":"http://purl.obolibrary.org/obo/CHEBI_35780"},{"id":"A141","pred":"chebi_id","subj":"T138","obj":"http://purl.obolibrary.org/obo/CHEBI_43474"},{"id":"A142","pred":"chebi_id","subj":"T142","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A143","pred":"chebi_id","subj":"T143","obj":"http://purl.obolibrary.org/obo/CHEBI_37926"},{"id":"A144","pred":"chebi_id","subj":"T144","obj":"http://purl.obolibrary.org/obo/CHEBI_60004"}],"text":"Flow cytometry analysis\nFlow cytometry analysis was performed to detect the binding of SARS-CoV-2 RBD protein to hACE2 receptor in 293T cells stably expressing hACE2 (hACE2/293T).26,32 SARS-CoV and MERS-CoV RBDs, as well as 293T cells stably expressing hDPP4 receptor (hDPP4/293T), were used as controls. Briefly, cells were incubated with respective RBD of SARS-CoV-2, SARS-CoV, or MERS-CoV containing a C-terminal hFc at 20 μg/ml for 30 min at room temperature, which was followed by incubation with FITC-labeled goat anti-human IgG antibody (1:500; Thermo Fisher Scientific) for 30 min and analyzed by flow cytometry. The blockage of RBD-receptor binding was performed by incubation of soluble human ACE2 (sACE2; 5 μg/ml; R\u0026D Systems, Minneapolis, MN) receptor with respective RBD of SARS-CoV-2, SARS-CoV, or MERS-CoV (20 μg/ml), followed by the same procedure as that described above. hIgG-Fc protein (hFc: 20 μg/ml), or soluble human DPP4 (sDPP4; 5 μg/ml; R\u0026D Systems) receptor, was included as control.\nDetection of hACE2 protein expression in hACE2/293T, or hDPP4 protein expression in hDPP4/293T, stable cell lines was performed by flow cytometry analysis, as described above, except that the cells were sequentially incubated with hACE2- or hDPP4-specific goat antibody (0.5 μg/ml; R\u0026D Systems) at room temperature for 20 min and FITC-labeled anti-goat IgG antibody (1:200; Abcam, Cambridge, MA) for 1 h at 4 °C.\nFlow cytometry analysis was also performed to detect the binding between SARS-CoV-2 RBD and hACE2, or bat-ACE2 (bACE2), receptor in transiently transfected 293T cells. Briefly, 293T cells were transfected with hACE2 or bACE2 plasmid using the calcium phosphate method, and 48 h later, they were incubated with SARS-CoV-2 RBD protein at various concentrations for 30 min at room temperature. SARS-CoV and MERS-CoV RBDs were included as controls. After staining with FITC-conjugated goat anti-human IgG antibody (1:500; Thermo Fisher Scientific), the mixture was analyzed by flow cytometry as described above."}
LitCovid-sentences
{"project":"LitCovid-sentences","denotations":[{"id":"T143","span":{"begin":0,"end":23},"obj":"Sentence"},{"id":"T144","span":{"begin":24,"end":304},"obj":"Sentence"},{"id":"T145","span":{"begin":305,"end":620},"obj":"Sentence"},{"id":"T146","span":{"begin":621,"end":910},"obj":"Sentence"},{"id":"T147","span":{"begin":911,"end":1008},"obj":"Sentence"},{"id":"T148","span":{"begin":1009,"end":1421},"obj":"Sentence"},{"id":"T149","span":{"begin":1422,"end":1589},"obj":"Sentence"},{"id":"T150","span":{"begin":1590,"end":1812},"obj":"Sentence"},{"id":"T151","span":{"begin":1813,"end":1866},"obj":"Sentence"},{"id":"T152","span":{"begin":1867,"end":2029},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Flow cytometry analysis\nFlow cytometry analysis was performed to detect the binding of SARS-CoV-2 RBD protein to hACE2 receptor in 293T cells stably expressing hACE2 (hACE2/293T).26,32 SARS-CoV and MERS-CoV RBDs, as well as 293T cells stably expressing hDPP4 receptor (hDPP4/293T), were used as controls. Briefly, cells were incubated with respective RBD of SARS-CoV-2, SARS-CoV, or MERS-CoV containing a C-terminal hFc at 20 μg/ml for 30 min at room temperature, which was followed by incubation with FITC-labeled goat anti-human IgG antibody (1:500; Thermo Fisher Scientific) for 30 min and analyzed by flow cytometry. The blockage of RBD-receptor binding was performed by incubation of soluble human ACE2 (sACE2; 5 μg/ml; R\u0026D Systems, Minneapolis, MN) receptor with respective RBD of SARS-CoV-2, SARS-CoV, or MERS-CoV (20 μg/ml), followed by the same procedure as that described above. hIgG-Fc protein (hFc: 20 μg/ml), or soluble human DPP4 (sDPP4; 5 μg/ml; R\u0026D Systems) receptor, was included as control.\nDetection of hACE2 protein expression in hACE2/293T, or hDPP4 protein expression in hDPP4/293T, stable cell lines was performed by flow cytometry analysis, as described above, except that the cells were sequentially incubated with hACE2- or hDPP4-specific goat antibody (0.5 μg/ml; R\u0026D Systems) at room temperature for 20 min and FITC-labeled anti-goat IgG antibody (1:200; Abcam, Cambridge, MA) for 1 h at 4 °C.\nFlow cytometry analysis was also performed to detect the binding between SARS-CoV-2 RBD and hACE2, or bat-ACE2 (bACE2), receptor in transiently transfected 293T cells. Briefly, 293T cells were transfected with hACE2 or bACE2 plasmid using the calcium phosphate method, and 48 h later, they were incubated with SARS-CoV-2 RBD protein at various concentrations for 30 min at room temperature. SARS-CoV and MERS-CoV RBDs were included as controls. After staining with FITC-conjugated goat anti-human IgG antibody (1:500; Thermo Fisher Scientific), the mixture was analyzed by flow cytometry as described above."}
2_test
{"project":"2_test","denotations":[{"id":"32203189-24719424-19774542","span":{"begin":179,"end":181},"obj":"24719424"},{"id":"32203189-23824801-19774543","span":{"begin":182,"end":184},"obj":"23824801"}],"text":"Flow cytometry analysis\nFlow cytometry analysis was performed to detect the binding of SARS-CoV-2 RBD protein to hACE2 receptor in 293T cells stably expressing hACE2 (hACE2/293T).26,32 SARS-CoV and MERS-CoV RBDs, as well as 293T cells stably expressing hDPP4 receptor (hDPP4/293T), were used as controls. Briefly, cells were incubated with respective RBD of SARS-CoV-2, SARS-CoV, or MERS-CoV containing a C-terminal hFc at 20 μg/ml for 30 min at room temperature, which was followed by incubation with FITC-labeled goat anti-human IgG antibody (1:500; Thermo Fisher Scientific) for 30 min and analyzed by flow cytometry. The blockage of RBD-receptor binding was performed by incubation of soluble human ACE2 (sACE2; 5 μg/ml; R\u0026D Systems, Minneapolis, MN) receptor with respective RBD of SARS-CoV-2, SARS-CoV, or MERS-CoV (20 μg/ml), followed by the same procedure as that described above. hIgG-Fc protein (hFc: 20 μg/ml), or soluble human DPP4 (sDPP4; 5 μg/ml; R\u0026D Systems) receptor, was included as control.\nDetection of hACE2 protein expression in hACE2/293T, or hDPP4 protein expression in hDPP4/293T, stable cell lines was performed by flow cytometry analysis, as described above, except that the cells were sequentially incubated with hACE2- or hDPP4-specific goat antibody (0.5 μg/ml; R\u0026D Systems) at room temperature for 20 min and FITC-labeled anti-goat IgG antibody (1:200; Abcam, Cambridge, MA) for 1 h at 4 °C.\nFlow cytometry analysis was also performed to detect the binding between SARS-CoV-2 RBD and hACE2, or bat-ACE2 (bACE2), receptor in transiently transfected 293T cells. Briefly, 293T cells were transfected with hACE2 or bACE2 plasmid using the calcium phosphate method, and 48 h later, they were incubated with SARS-CoV-2 RBD protein at various concentrations for 30 min at room temperature. SARS-CoV and MERS-CoV RBDs were included as controls. After staining with FITC-conjugated goat anti-human IgG antibody (1:500; Thermo Fisher Scientific), the mixture was analyzed by flow cytometry as described above."}