> top > docs > PMC:7088323 > spans > 6198-7778 > annotations

PMC:7088323 / 6198-7778 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T10 87-92 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T11 345-349 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T12 933-938 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T13 1257-1261 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T14 1410-1426 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T7 345-349 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T8 1257-1261 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T9 1422-1426 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T10 1548-1552 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T38 285-293 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T39 834-842 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T40 878-893 Disease denotes pulmonary edema http://purl.obolibrary.org/obo/MONDO_0006932
T41 1225-1245 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T43 1236-1245 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T44 1262-1268 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T45 1303-1311 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T46 1461-1469 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T72 87-92 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T73 332-333 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T74 345-349 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T75 345-349 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T76 412-414 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T77 832-833 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T78 865-867 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T79 906-914 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T80 933-938 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T81 1225-1235 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T82 1257-1261 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T83 1257-1261 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T84 1282-1285 http://purl.obolibrary.org/obo/CLO_0001627 denotes a A
T85 1286-1288 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T86 1298-1302 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T87 1298-1302 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T88 1375-1376 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T89 1440-1441 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T90 1442-1443 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T91 1456-1460 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T92 1456-1460 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T7 1298-1302 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T8 1456-1460 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T9 878-893 Phenotype denotes pulmonary edema http://purl.obolibrary.org/obo/HP_0100598
T10 1236-1245 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T11 1331-1336 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T12 1341-1349 Phenotype denotes headache http://purl.obolibrary.org/obo/HP_0002315
T13 1489-1494 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T5 915-924 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T43 0-20 Sentence denotes Ground glass opacity
T44 21-267 Sentence denotes GGO were defined as hazy areas with slightly increased density in lungs without obscuration of bronchial and vascular margins, which may be caused by partial displacement of air due to partial filling of airspaces or interstitial thickening [26].
T45 268-426 Sentence denotes In patients with COVID-19, unilaterally or bilaterally GGO with a peripheral lung and subpleural distribution are commonly encountered [16, 19, 22] (Fig. 1a).
T46 427-630 Sentence denotes In the very first radiologic investigation of 21 patients by Chung et al [9], GGO was found in 57% patients and was believed to be the earliest radiographically visible CT manifestation in some patients.
T47 631-789 Sentence denotes These results are consistent with those of other subsequent studies, presenting GGO as the most common imaging finding with occurrence rate of up to 98% [23].
T48 790-1013 Sentence denotes Recently, the first post-mortem biopsy in a COVID-19 patient was reported [27], showing pulmonary edema and hyaline membrane formation in both lungs, which we speculate may be the underlying pathological driver of GGO sign.
T49 1014-1162 Sentence denotes Moreover, GGO are often accompanied by other features or patterns, including reticular and/or interlobular septal thickening and consolidation [19].
T50 1163-1274 Sentence denotes GGO together with small areas of consolidation may suggest an organizing pneumonia pattern of lung injury [28].
T51 1275-1360 Sentence denotes Fig. 1 a A 35-year-old male COVID-19 patient presenting fever and headache for 1 day.
T52 1361-1506 Sentence denotes CT scan shows a pure ground glass opacity in the right lower lobe (red frame). b A 47-year-old male COVID-19 patient presenting fever for 7 days.
T53 1507-1580 Sentence denotes CT scan shows consolidation in the right lobe subpleural area (red frame)

0_colil

Id Subject Object Predicate Lexical cue
32193638-18195376-54918 263-265 18195376 denotes 26
32193638-32027573-54919 408-410 32027573 denotes 19
32193638-32017661-54920 501-502 32017661 denotes 9
32193638-32027573-54921 1158-1160 32027573 denotes 19
32193638-32017662-54922 1270-1272 32017662 denotes 28

TEST0

Id Subject Object Predicate Lexical cue
32193638-233-239-54918 263-265 ["18195376"] denotes 26
32193638-140-146-54919 408-410 ["32027573"] denotes 19
32193638-74-79-54920 501-502 ["32017661"] denotes 9
32193638-144-150-54921 1158-1160 ["32027573"] denotes 19
32193638-107-113-54922 1270-1272 ["32017662"] denotes 28

MyTest

Id Subject Object Predicate Lexical cue
32193638-18195376-29362771 263-265 18195376 denotes 26
32193638-32027573-29362772 408-410 32027573 denotes 19
32193638-32017661-29362773 501-502 32017661 denotes 9
32193638-32027573-29362774 1158-1160 32027573 denotes 19
32193638-32017662-29362775 1270-1272 32017662 denotes 28

2_test

Id Subject Object Predicate Lexical cue
32193638-18195376-29362771 263-265 18195376 denotes 26
32193638-32027573-29362772 408-410 32027573 denotes 19
32193638-32017661-29362773 501-502 32017661 denotes 9
32193638-32027573-29362774 1158-1160 32027573 denotes 19
32193638-32017662-29362775 1270-1272 32017662 denotes 28

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
101 1312-1319 Species denotes patient Tax:9606
102 1470-1477 Species denotes patient Tax:9606
103 1303-1311 Disease denotes COVID-19 MESH:C000657245
104 1331-1336 Disease denotes fever MESH:D005334
105 1341-1349 Disease denotes headache MESH:D006261
106 1461-1469 Disease denotes COVID-19 MESH:C000657245
107 1489-1494 Disease denotes fever MESH:D005334
118 271-279 Species denotes patients Tax:9606
119 476-484 Species denotes patients Tax:9606
120 526-534 Species denotes patients Tax:9606
121 621-629 Species denotes patients Tax:9606
122 843-850 Species denotes patient Tax:9606
123 285-293 Disease denotes COVID-19 MESH:C000657245
124 834-842 Disease denotes COVID-19 MESH:C000657245
125 878-893 Disease denotes pulmonary edema MESH:D011654
126 1236-1245 Disease denotes pneumonia MESH:D011014
127 1257-1268 Disease denotes lung injury MESH:D055370