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PMC:7080117 / 2490-4983 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
82 67-89 Species denotes 2019 novel coronavirus Tax:2697049
83 91-101 Species denotes SARS-CoV-2 Tax:2697049
84 364-372 Species denotes patients Tax:9606
85 43-52 Disease denotes pneumonia MESH:D011014
86 153-161 Disease denotes COVID-19 MESH:C000657245
87 642-670 Disease denotes novel coronavirus infections MESH:C000657245
107 672-682 Species denotes SARS-CoV-2 Tax:2697049
108 688-703 Species denotes betacoronavirus Tax:694002
109 731-744 Species denotes Coronaviridae Tax:11118
110 792-803 Species denotes coronavirus Tax:11118
111 843-849 Species denotes humans Tax:9606
112 1003-1048 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
113 1050-1058 Species denotes SARS-CoV Tax:694009
114 1064-1119 Species denotes Middle East respiratory syndrome coronavirus (MERS-CoV) Tax:1335626
115 1152-1162 Species denotes SARS-CoV-2 Tax:2697049
116 1192-1205 Species denotes coronaviruses Tax:11118
117 1219-1225 Species denotes humans Tax:9606
118 1240-1248 Species denotes patients Tax:9606
119 1353-1361 Species denotes SARS-CoV Tax:694009
120 908-918 Disease denotes infections MESH:D007239
121 961-974 Disease denotes cold symptoms MESH:D051271
122 1231-1239 Disease denotes Infected MESH:D007239
123 1278-1283 Disease denotes fever MESH:D005334
124 1285-1290 Disease denotes cough MESH:D003371
125 1366-1385 Disease denotes MERS-CoV infections MESH:D018352
137 1463-1473 Species denotes SARS-CoV-2 Tax:2697049
138 1495-1500 Species denotes human Tax:9606
139 1564-1569 Species denotes child Tax:9606
140 1637-1644 Species denotes patient Tax:9606
141 1682-1699 Species denotes novel coronavirus Tax:2697049
142 1780-1788 Species denotes patients Tax:9606
143 1841-1847 Species denotes people Tax:9606
144 2073-2083 Species denotes SARS-CoV-2 Tax:2697049
145 1443-1452 Disease denotes pneumonia MESH:D011014
146 1794-1814 Disease denotes SARS-CoV-2 infection MESH:C000657245
147 2049-2057 Disease denotes infected MESH:D007239
153 2276-2284 Species denotes patients Tax:9606
154 2349-2357 Species denotes patients Tax:9606
155 2157-2175 Disease denotes lung abnormalities MESH:D008171
156 2290-2310 Disease denotes SARS-CoV-2 infection MESH:C000657245
157 2449-2467 Disease denotes COVID-19 pneumonia MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T9 1322-1326 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T10 1587-1591 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T11 2061-2066 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T12 2104-2109 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T13 2157-2161 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T10 1322-1326 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T11 1587-1591 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T12 2061-2066 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T13 2104-2109 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T14 2157-2161 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T18 43-52 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T19 91-99 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T20 153-161 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T21 660-670 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T22 672-680 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T23 908-918 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T24 954-965 Disease denotes common cold http://purl.obolibrary.org/obo/MONDO_0005709
T25 1003-1036 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T26 1050-1058 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T27 1152-1160 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T28 1353-1361 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T29 1375-1385 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T30 1443-1452 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T31 1463-1471 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 1794-1802 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 1805-1814 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T34 2073-2081 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 2290-2298 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T36 2301-2310 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T37 2449-2457 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T38 2458-2467 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T18 31-32 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 227-228 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 514-515 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 590-591 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 620-623 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T23 686-687 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 843-849 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T25 1219-1225 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T26 1322-1326 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T27 1322-1326 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T28 1391-1392 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T29 1421-1422 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 1495-1500 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T31 1550-1554 http://purl.obolibrary.org/obo/CLO_0001550 denotes a 10
T32 1587-1591 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T33 1587-1591 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T34 1853-1854 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 2061-2066 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T36 2097-2102 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T37 2104-2109 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T38 2157-2161 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T39 2157-2161 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T40 2346-2348 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 2084-2096 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T2 2092-2096 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T23 0-12 Sentence denotes Introduction
T24 13-136 Sentence denotes In December 2019, a series of pneumonia caused by the 2019 novel coronavirus (SARS-CoV-2) break out in Wuhan, Hubei, China.
T25 137-201 Sentence denotes Since then, the COVID-19 confirmed cases are increasing rapidly.
T26 202-373 Sentence denotes As of February 10, 2020, a total of 40,265 confirmed cases have been reported in China, with another 23,589 suspected cases, 909 fatal cases, and 3501 discharged patients.
T27 374-455 Sentence denotes Moreover, more than 300 similar cases have been identified in other 24 countries.
T28 456-671 Sentence denotes On December 30, 2019, WHO announced the event constituted a Public Health Emergency of International Concern (PHEIC), indicating that a big threat to global health has been posed by the novel coronavirus infections.
T29 672-775 Sentence denotes SARS-CoV-2 is a betacoronavirus that belongs to the family Coronaviridae and the order Nidovirales [1].
T30 776-868 Sentence denotes Up to date, six coronavirus species have been identified to infect humans and cause disease.
T31 869-979 Sentence denotes Among them, 229E, OC43, NL63, and HKU1 infections are frequently mild, mostly caused common cold symptoms [2].
T32 980-1151 Sentence denotes The other two species, severe acute respiratory syndrome coronavirus (SARS-CoV) and Middle East respiratory syndrome coronavirus (MERS-CoV), might cause fatal illness [3].
T33 1152-1230 Sentence denotes SARS-CoV-2 is the seventh member of the coronaviruses that infects humans [4].
T34 1231-1390 Sentence denotes Infected patients predominantly presented with fever, cough, and radiological ground glass lung opacities, which resemble SARS-CoV and MERS-CoV infections [5].
T35 1391-1533 Sentence denotes A recent publication reported a familial cluster of pneumonia linked to SARS-CoV-2, which indicated the human transmission of the disease [6].
T36 1534-1632 Sentence denotes In this family, a 10-year-old child had ground glass lung opacification, but no clinical symptoms.
T37 1633-1745 Sentence denotes The patient was confirmed to be affected by this novel coronavirus by real-time polymerase chain reaction (PCR).
T38 1746-1832 Sentence denotes These findings indicate that some patients with SARS-CoV-2 infection are asymptomatic.
T39 1833-2103 Sentence denotes If some people have a clear history of exposure, regardless of clinical symptoms, or if they present suggestive clinical manifestations, regardless of history of exposure, it is necessary to confirm whether they are infected by chest CT or SARS-CoV-2 nucleic acid tests.
T40 2104-2206 Sentence denotes Chest CT plays an important role in timely detecting lung abnormalities, allowing for early treatment.
T41 2207-2358 Sentence denotes We aimed at describing clinical and CT imaging characteristics of 90 patients with SARS-CoV-2 infection and early follow-up appearances of 52 patients.
T42 2359-2493 Sentence denotes We hope our findings will provide useful information for medical imagers to recognize the COVID-19 pneumonia and assess its evolution.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T10 43-52 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T11 1278-1283 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T12 1285-1290 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T13 1443-1452 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T14 2458-2467 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

MyTest

Id Subject Object Predicate Lexical cue
32107577-27012512-29177258 976-977 27012512 denotes 2
32107577-30531947-29177259 1148-1149 30531947 denotes 3
32107577-31978945-29177260 1227-1228 31978945 denotes 4

2_test

Id Subject Object Predicate Lexical cue
32107577-27012512-29177258 976-977 27012512 denotes 2
32107577-30531947-29177259 1148-1149 30531947 denotes 3
32107577-31978945-29177260 1227-1228 31978945 denotes 4