PMC:7080035 / 8119-9569
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T61 | 329-334 | Body_part | denotes | Chest | http://purl.org/sig/ont/fma/fma9576 |
| T62 | 438-442 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T63 | 595-600 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
| T64 | 673-678 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
| T65 | 877-888 | Body_part | denotes | lymph nodes | http://purl.org/sig/ont/fma/fma5034 |
| T66 | 877-882 | Body_part | denotes | lymph | http://purl.org/sig/ont/fma/fma9671 |
| T67 | 896-907 | Body_part | denotes | mediastinum | http://purl.org/sig/ont/fma/fma9826 |
| T68 | 1145-1150 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
| T69 | 1365-1370 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
| T70 | 1397-1408 | Body_part | denotes | lymph nodes | http://purl.org/sig/ont/fma/fma5034 |
| T71 | 1397-1402 | Body_part | denotes | lymph | http://purl.org/sig/ont/fma/fma9671 |
| T72 | 1416-1427 | Body_part | denotes | mediastinum | http://purl.org/sig/ont/fma/fma9826 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T51 | 329-334 | Body_part | denotes | Chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T52 | 438-442 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T53 | 443-447 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
| T54 | 673-678 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T55 | 877-888 | Body_part | denotes | lymph nodes | http://purl.obolibrary.org/obo/UBERON_0000029 |
| T56 | 877-882 | Body_part | denotes | lymph | http://purl.obolibrary.org/obo/UBERON_0002391 |
| T57 | 896-907 | Body_part | denotes | mediastinum | http://purl.obolibrary.org/obo/UBERON_0003728 |
| T58 | 1145-1150 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T59 | 1397-1408 | Body_part | denotes | lymph nodes | http://purl.obolibrary.org/obo/UBERON_0000029 |
| T60 | 1397-1402 | Body_part | denotes | lymph | http://purl.obolibrary.org/obo/UBERON_0002391 |
| T61 | 1416-1427 | Body_part | denotes | mediastinum | http://purl.obolibrary.org/obo/UBERON_0003728 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T33 | 1050-1058 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T99 | 7-8 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T100 | 9-11 | http://purl.obolibrary.org/obo/CLO_0001382 | denotes | 48 |
| T101 | 261-262 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T102 | 329-334 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | Chest |
| T103 | 403-404 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T104 | 438-442 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T105 | 438-442 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T106 | 449-450 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T107 | 595-600 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
| T108 | 633-634 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
| T109 | 673-678 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T110 | 745-746 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T111 | 877-888 | http://purl.obolibrary.org/obo/UBERON_0000029 | denotes | lymph nodes |
| T112 | 959-961 | http://purl.obolibrary.org/obo/CLO_0001387 | denotes | 4c |
| T113 | 1133-1134 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T114 | 1145-1150 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T115 | 1237-1238 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T116 | 1365-1370 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
| T117 | 1397-1408 | http://purl.obolibrary.org/obo/UBERON_0000029 | denotes | lymph nodes |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T38 | 470-473 | Chemical | denotes | PET | http://purl.obolibrary.org/obo/CHEBI_131701 |
| T39 | 1061-1073 | Chemical | denotes | nucleic acid | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T40 | 1069-1073 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T41 | 1189-1198 | Chemical | denotes | antiviral | http://purl.obolibrary.org/obo/CHEBI_22587 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T34 | 98-103 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T35 | 130-136 | Phenotype | denotes | chills | http://purl.obolibrary.org/obo/HP_0025143 |
| T36 | 138-147 | Phenotype | denotes | dry cough | http://purl.obolibrary.org/obo/HP_0031246 |
| T37 | 149-156 | Phenotype | denotes | myalgia | http://purl.obolibrary.org/obo/HP_0003326 |
| T38 | 162-169 | Phenotype | denotes | fatigue | http://purl.obolibrary.org/obo/HP_0012378 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T72 | 0-6 | Sentence | denotes | Case 4 |
| T73 | 7-170 | Sentence | denotes | A 48-year-old woman working in the Wuhan Union Hospital presented with an 8-day history of fever (37–38 °C) accompanied by chills, dry cough, myalgia, and fatigue. |
| T74 | 171-260 | Sentence | denotes | WBC count was within the reference range, but she had increased hsCRP levels (12.2 mg/L). |
| T75 | 261-328 | Sentence | denotes | A search for known respiratory pathogens yielded negative findings. |
| T76 | 329-448 | Sentence | denotes | Chest CT imaging (January 15, 2020, Fig. 4d) led to the identification of a blurry shadow in the right lower lung lobe. |
| T77 | 449-644 | Sentence | denotes | A subsequent 18F-FDG PET/CT scan (January 20, 2020) revealed the presence of peripheral FDG-avid GGOs with interlobular septal thickening in both lungs (SUVmax range 3.7–9.3; Fig. 4a, b, arrows). |
| T78 | 645-838 | Sentence | denotes | When compared with previous chest CT results, there was evidence of disease progression as shown by a higher number of lesions, which were also characterized by an increased extent and density. |
| T79 | 839-971 | Sentence | denotes | There were also multiple FDG-positive lymph nodes in the mediastinum and right hilar region (SUVmax range 3.8–5.5; Fig. 4c, arrows). |
| T80 | 972-1132 | Sentence | denotes | Real-time fluorescent polymerase chain reaction (RT-PCR) for the detection of SARS-CoV-2 nucleic acid yielded negative findings in two independent measurements. |
| T81 | 1133-1288 | Sentence | denotes | A follow-up chest CT (February 1, 2020) performed after antiviral and anti-infective treatment revealed a significant improvement in the picture (Fig. 4d). |
| T82 | 1289-1450 | Sentence | denotes | Fig. 4 Peripheral FDG-avid GGOs with interlobular septal thickening in both lungs and multiple FDG-positive lymph nodes in the mediastinum and right hilar region |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 196 | 21-26 | Species | denotes | woman | Tax:9606 |
| 197 | 1050-1060 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 198 | 280-291 | Species | denotes | respiratory | Tax:12814 |
| 199 | 462-469 | Chemical | denotes | 18F-FDG | MESH:D019788 |
| 200 | 98-103 | Disease | denotes | fever | MESH:D005334 |
| 201 | 138-147 | Disease | denotes | dry cough | MESH:D003371 |
| 202 | 149-156 | Disease | denotes | myalgia | MESH:D063806 |
| 203 | 162-169 | Disease | denotes | fatigue | MESH:D005221 |