PMC:7080035 / 5779-7210
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T37 | 62-66 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T38 | 78-81 | Body_part | denotes | rib | http://purl.org/sig/ont/fma/fma7574 |
| T39 | 317-323 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
| T40 | 461-472 | Body_part | denotes | neutrophils | http://purl.org/sig/ont/fma/fma62860 |
| T41 | 483-494 | Body_part | denotes | lymphocytes | http://purl.org/sig/ont/fma/fma62863 |
| T42 | 572-583 | Body_part | denotes | erythrocyte | http://purl.org/sig/ont/fma/fma62845 |
| T43 | 843-848 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
| T44 | 927-938 | Body_part | denotes | lymph nodes | http://purl.org/sig/ont/fma/fma5034 |
| T45 | 927-932 | Body_part | denotes | lymph | http://purl.org/sig/ont/fma/fma9671 |
| T46 | 946-957 | Body_part | denotes | mediastinum | http://purl.org/sig/ont/fma/fma9826 |
| T47 | 1340-1345 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
| T48 | 1375-1386 | Body_part | denotes | lymph nodes | http://purl.org/sig/ont/fma/fma5034 |
| T49 | 1375-1380 | Body_part | denotes | lymph | http://purl.org/sig/ont/fma/fma9671 |
| T50 | 1394-1405 | Body_part | denotes | mediastinum | http://purl.org/sig/ont/fma/fma9826 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T30 | 62-66 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T31 | 78-81 | Body_part | denotes | rib | http://purl.obolibrary.org/obo/UBERON_0002228 |
| T32 | 317-323 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
| T33 | 927-938 | Body_part | denotes | lymph nodes | http://purl.obolibrary.org/obo/UBERON_0000029 |
| T34 | 927-932 | Body_part | denotes | lymph | http://purl.obolibrary.org/obo/UBERON_0002391 |
| T35 | 946-957 | Body_part | denotes | mediastinum | http://purl.obolibrary.org/obo/UBERON_0003728 |
| T36 | 1375-1386 | Body_part | denotes | lymph nodes | http://purl.obolibrary.org/obo/UBERON_0000029 |
| T37 | 1375-1380 | Body_part | denotes | lymph | http://purl.obolibrary.org/obo/UBERON_0002391 |
| T38 | 1394-1405 | Body_part | denotes | mediastinum | http://purl.obolibrary.org/obo/UBERON_0003728 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T28 | 82-90 | Disease | denotes | fracture | http://purl.obolibrary.org/obo/MONDO_0005315 |
| T29 | 381-391 | Disease | denotes | leukopenia | http://purl.obolibrary.org/obo/MONDO_0003785 |
| T30 | 1040-1048 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T63 | 7-8 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T64 | 30-31 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T65 | 62-66 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T66 | 62-66 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T67 | 78-81 | http://purl.obolibrary.org/obo/UBERON_0002228 | denotes | rib |
| T68 | 119-120 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T69 | 359-366 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T70 | 572-583 | http://purl.obolibrary.org/obo/CL_0000232 | denotes | erythrocyte |
| T71 | 661-662 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T72 | 843-848 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
| T73 | 877-879 | http://purl.obolibrary.org/obo/CLO_0001236 | denotes | 2a |
| T74 | 881-882 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
| T75 | 927-938 | http://purl.obolibrary.org/obo/UBERON_0000029 | denotes | lymph nodes |
| T76 | 1064-1075 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing was |
| T77 | 1340-1345 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
| T78 | 1375-1386 | http://purl.obolibrary.org/obo/UBERON_0000029 | denotes | lymph nodes |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T28 | 737-740 | Chemical | denotes | PET | http://purl.obolibrary.org/obo/CHEBI_131701 |
| T29 | 1051-1063 | Chemical | denotes | nucleic acid | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T30 | 1059-1063 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T31 | 1114-1117 | Chemical | denotes | PET | http://purl.obolibrary.org/obo/CHEBI_131701 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T27 | 184-202 | Phenotype | denotes | intermittent fever | http://purl.obolibrary.org/obo/HP_0001954 |
| T28 | 284-291 | Phenotype | denotes | fatigue | http://purl.obolibrary.org/obo/HP_0012378 |
| T29 | 296-305 | Phenotype | denotes | dizziness | http://purl.obolibrary.org/obo/HP_0002321 |
| T30 | 307-312 | Phenotype | denotes | Cough | http://purl.obolibrary.org/obo/HP_0012735 |
| T31 | 381-391 | Phenotype | denotes | leukopenia | http://purl.obolibrary.org/obo/HP_0001882 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T53 | 0-6 | Sentence | denotes | Case 2 |
| T54 | 7-306 | Sentence | denotes | A 56-year-old man with a recent history of surgery for lung repair and rib fracture internal fixation following a traumatic event presented to hospital with an 8-day history of intermittent fever (up to 39.1 °C, more frequent in early morning and the afternoon) accompanied by fatigue and dizziness. |
| T55 | 307-347 | Sentence | denotes | Cough and sputum production were absent. |
| T56 | 348-517 | Sentence | denotes | Laboratory testing revealed mild leukopenia (WBC count 3.33 × 109/L; reference range 3.5–9.5 × 109/L) with 75.5% neutrophils and 17.5% lymphocytes (normal range 20–40%). |
| T57 | 518-728 | Sentence | denotes | Inflammatory indices, including hsCRP (23.6 mg/L) and erythrocyte sedimentation rate (73 mm/h; reference range < 15 mm/h), were increased, but a search for known respiratory pathogens yielded negative findings. |
| T58 | 729-892 | Sentence | denotes | 18F-FDG PET/CT imaging (January 13, 2020) revealed multiple FDG-positive GGOs and consolidative opacities in both lungs (SUVmax range 1.8–7.9; Fig. 2a, b, arrows). |
| T59 | 893-1024 | Sentence | denotes | There were also multiple FDG-avid lymph nodes in the mediastinum and the subclavian region (SUVmax range 4.1–7.0; Fig. 2c, arrows). |
| T60 | 1025-1090 | Sentence | denotes | Unfortunately, SARS-CoV-2 nucleic acid testing was not performed. |
| T61 | 1091-1269 | Sentence | denotes | The lesions on 18F-FDG PET/CT were smaller than those detected on previous CT imaging (January 7, 2020) and regressed further after treatment (January 21, 2020; Fig. 2d, arrows). |
| T62 | 1270-1431 | Sentence | denotes | Fig. 2 Multiple FDG-positive GGOs and consolidative opacities in both lungs as well as multiple FDG-avid lymph nodes in the mediastinum and the subclavian region |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 164 | 1040-1050 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 165 | 680-691 | Species | denotes | respiratory | Tax:12814 |
| 166 | 729-736 | Chemical | denotes | 18F-FDG | MESH:D019788 |
| 167 | 1106-1113 | Chemical | denotes | 18F-FDG | MESH:D019788 |
| 168 | 78-108 | Disease | denotes | rib fracture internal fixation | MESH:D012253 |
| 169 | 197-202 | Disease | denotes | fever | MESH:D005334 |
| 170 | 284-291 | Disease | denotes | fatigue | MESH:D005221 |
| 171 | 296-305 | Disease | denotes | dizziness | MESH:D004244 |
| 172 | 307-312 | Disease | denotes | Cough | MESH:D003371 |
| 173 | 381-391 | Disease | denotes | leukopenia | MESH:D007970 |