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PMC:7080035 / 4606-5777 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T26 54-60 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T27 131-147 Body_part denotes white blood cell http://purl.org/sig/ont/fma/fma62852
T28 143-147 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T29 241-248 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T30 465-468 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T31 498-503 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T32 594-604 Body_part denotes right lung http://purl.org/sig/ont/fma/fma7309
T33 833-837 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T34 874-878 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T35 1147-1151 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T36 1167-1171 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T21 54-60 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T22 137-142 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T23 498-503 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T24 594-604 Body_part denotes right lung http://purl.obolibrary.org/obo/UBERON_0002167
T25 600-604 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T26 833-837 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T27 874-878 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T28 1147-1151 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T29 1167-1171 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T22 49-60 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T23 348-369 Disease denotes Mycoplasma pneumoniae http://purl.obolibrary.org/obo/MONDO_0005867
T24 371-391 Disease denotes Chlamydia pneumoniae http://purl.obolibrary.org/obo/MONDO_0025598
T25 682-687 Disease denotes tumor http://purl.obolibrary.org/obo/MONDO_0005070
T26 695-713 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T27 913-921 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T38 0-1 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T39 112-119 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T40 129-130 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 137-142 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T42 143-147 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T43 191-192 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 295-296 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T45 427-432 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T46 448-449 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T47 450-455 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T48 496-497 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T49 498-503 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T50 581-582 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 594-604 http://purl.obolibrary.org/obo/UBERON_0002167 denotes right lung
T52 680-681 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T53 833-837 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T54 833-837 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T55 848-849 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T56 874-878 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T57 874-878 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T58 937-948 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing was
T59 1147-1151 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T60 1147-1151 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T61 1167-1171 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T62 1167-1171 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T24 241-248 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T25 724-727 Chemical denotes PET http://purl.obolibrary.org/obo/CHEBI_131701
T26 924-936 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T27 932-936 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T22 49-60 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T23 65-70 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T24 359-369 Phenotype denotes pneumoniae http://purl.obolibrary.org/obo/HP_0002090
T25 381-391 Phenotype denotes pneumoniae http://purl.obolibrary.org/obo/HP_0002090
T26 682-687 Phenotype denotes tumor http://purl.obolibrary.org/obo/HP_0002664

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T6 784-790 http://purl.obolibrary.org/obo/GO_0098739 denotes uptake
T7 784-790 http://purl.obolibrary.org/obo/GO_0098657 denotes uptake
T8 1121-1127 http://purl.obolibrary.org/obo/GO_0098739 denotes uptake
T9 1121-1127 http://purl.obolibrary.org/obo/GO_0098657 denotes uptake

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T45 0-100 Sentence denotes A 57-year-old man living in Wuhan presented with sore throat and fever (39.0 °C) lasting for 3 days.
T46 101-294 Sentence denotes Laboratory testing revealed a white blood cell (WBC) count within the reference range and a slight elevation of high-sensitivity C-reactive protein (hsCRP; 6.65 mg/L, reference range 0–5 mg/L).
T47 295-495 Sentence denotes A search for common respiratory pathogens, including Mycoplasma pneumoniae, Chlamydia pneumoniae, adenovirus, respiratory syncytial virus, and Coxsackie B-virus specific IgM, yielded negative results.
T48 496-715 Sentence denotes A chest CT scan conducted in another hospital 2 days before revealed the presence of a GGO in the right lung, which required further diagnostic workout (differential diagnosis between a tumor and an infectious disease).
T49 716-897 Sentence denotes 18F-FDG PET/CT identified peripheral GGOs with an increased 18F-FDG uptake (SUVmax range 2.2–4.6) in the right upper lung (Fig. 1a, b, arrows) and left lower lung (Fig. 1c; arrows).
T50 898-963 Sentence denotes Unfortunately, SARS-CoV-2 nucleic acid testing was not performed.
T51 964-1071 Sentence denotes Antiviral, anti-inflammatory, and symptomatic treatment for 2 weeks led to complete resolution of symptoms.
T52 1072-1171 Sentence denotes Fig. 1 Peripheral GGOs with an increased 18F-FDG uptake in the right upper lung and left lower lung

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
126 1090-1094 Chemical denotes GGOs
127 1113-1120 Chemical denotes 18F-FDG MESH:D019788
141 230-248 Gene denotes C-reactive protein Gene:1401
142 348-369 Species denotes Mycoplasma pneumoniae Tax:2104
143 371-391 Species denotes Chlamydia pneumoniae Tax:83558
144 393-403 Species denotes adenovirus Tax:10508
145 405-432 Species denotes respiratory syncytial virus Tax:12814
146 913-923 Species denotes SARS-CoV-2 Tax:2697049
147 315-326 Species denotes respiratory Tax:12814
148 716-723 Chemical denotes 18F-FDG MESH:D019788
149 776-783 Chemical denotes 18F-FDG MESH:D019788
150 49-60 Disease denotes sore throat MESH:D010608
151 65-70 Disease denotes fever MESH:D005334
152 682-687 Disease denotes tumor MESH:D009369
153 695-713 Disease denotes infectious disease MESH:D003141