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PMC:7080035 / 4599-5777 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T26 61-67 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T27 138-154 Body_part denotes white blood cell http://purl.org/sig/ont/fma/fma62852
T28 150-154 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T29 248-255 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T30 472-475 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T31 505-510 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T32 601-611 Body_part denotes right lung http://purl.org/sig/ont/fma/fma7309
T33 840-844 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T34 881-885 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T35 1154-1158 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T36 1174-1178 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T21 61-67 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T22 144-149 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T23 505-510 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T24 601-611 Body_part denotes right lung http://purl.obolibrary.org/obo/UBERON_0002167
T25 607-611 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T26 840-844 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T27 881-885 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T28 1154-1158 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T29 1174-1178 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T22 56-67 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T23 355-376 Disease denotes Mycoplasma pneumoniae http://purl.obolibrary.org/obo/MONDO_0005867
T24 378-398 Disease denotes Chlamydia pneumoniae http://purl.obolibrary.org/obo/MONDO_0025598
T25 689-694 Disease denotes tumor http://purl.obolibrary.org/obo/MONDO_0005070
T26 702-720 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T27 920-928 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T38 7-8 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T39 119-126 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T40 136-137 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 144-149 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T42 150-154 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T43 198-199 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 302-303 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T45 434-439 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T46 455-456 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T47 457-462 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T48 503-504 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T49 505-510 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T50 588-589 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 601-611 http://purl.obolibrary.org/obo/UBERON_0002167 denotes right lung
T52 687-688 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T53 840-844 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T54 840-844 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T55 855-856 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T56 881-885 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T57 881-885 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T58 944-955 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing was
T59 1154-1158 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T60 1154-1158 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T61 1174-1178 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T62 1174-1178 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T24 248-255 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T25 731-734 Chemical denotes PET http://purl.obolibrary.org/obo/CHEBI_131701
T26 931-943 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T27 939-943 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T22 56-67 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T23 72-77 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T24 366-376 Phenotype denotes pneumoniae http://purl.obolibrary.org/obo/HP_0002090
T25 388-398 Phenotype denotes pneumoniae http://purl.obolibrary.org/obo/HP_0002090
T26 689-694 Phenotype denotes tumor http://purl.obolibrary.org/obo/HP_0002664

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T6 791-797 http://purl.obolibrary.org/obo/GO_0098739 denotes uptake
T7 791-797 http://purl.obolibrary.org/obo/GO_0098657 denotes uptake
T8 1128-1134 http://purl.obolibrary.org/obo/GO_0098739 denotes uptake
T9 1128-1134 http://purl.obolibrary.org/obo/GO_0098657 denotes uptake

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T44 0-6 Sentence denotes Case 1
T45 7-107 Sentence denotes A 57-year-old man living in Wuhan presented with sore throat and fever (39.0 °C) lasting for 3 days.
T46 108-301 Sentence denotes Laboratory testing revealed a white blood cell (WBC) count within the reference range and a slight elevation of high-sensitivity C-reactive protein (hsCRP; 6.65 mg/L, reference range 0–5 mg/L).
T47 302-502 Sentence denotes A search for common respiratory pathogens, including Mycoplasma pneumoniae, Chlamydia pneumoniae, adenovirus, respiratory syncytial virus, and Coxsackie B-virus specific IgM, yielded negative results.
T48 503-722 Sentence denotes A chest CT scan conducted in another hospital 2 days before revealed the presence of a GGO in the right lung, which required further diagnostic workout (differential diagnosis between a tumor and an infectious disease).
T49 723-904 Sentence denotes 18F-FDG PET/CT identified peripheral GGOs with an increased 18F-FDG uptake (SUVmax range 2.2–4.6) in the right upper lung (Fig. 1a, b, arrows) and left lower lung (Fig. 1c; arrows).
T50 905-970 Sentence denotes Unfortunately, SARS-CoV-2 nucleic acid testing was not performed.
T51 971-1078 Sentence denotes Antiviral, anti-inflammatory, and symptomatic treatment for 2 weeks led to complete resolution of symptoms.
T52 1079-1178 Sentence denotes Fig. 1 Peripheral GGOs with an increased 18F-FDG uptake in the right upper lung and left lower lung

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
126 1097-1101 Chemical denotes GGOs
127 1120-1127 Chemical denotes 18F-FDG MESH:D019788
141 237-255 Gene denotes C-reactive protein Gene:1401
142 355-376 Species denotes Mycoplasma pneumoniae Tax:2104
143 378-398 Species denotes Chlamydia pneumoniae Tax:83558
144 400-410 Species denotes adenovirus Tax:10508
145 412-439 Species denotes respiratory syncytial virus Tax:12814
146 920-930 Species denotes SARS-CoV-2 Tax:2697049
147 322-333 Species denotes respiratory Tax:12814
148 723-730 Chemical denotes 18F-FDG MESH:D019788
149 783-790 Chemical denotes 18F-FDG MESH:D019788
150 56-67 Disease denotes sore throat MESH:D010608
151 72-77 Disease denotes fever MESH:D005334
152 689-694 Disease denotes tumor MESH:D009369
153 702-720 Disease denotes infectious disease MESH:D003141