PMC:7080035 / 3136-4108 JSONTXT

{"project":"LitCovid_Glycan-Motif-Structure","denotations":[{"id":"T1","span":{"begin":742,"end":744},"obj":"https://glytoucan.org/Structures/Glycans/G04616ST"},{"id":"T2","span":{"begin":900,"end":902},"obj":"https://glytoucan.org/Structures/Glycans/G04616ST"}],"text":"Patient number 1 2 3 4\nSex Man Man Woman Woman\nAge, years 57 56 61 48\nClinical symptoms Fever, sore throat Fever, fatigue, dizziness Back pain, dry cough Fever, chill, dry cough, myalgia, and fatigue\nHistory of staying in Wuhan Yes Yes Yes Yes\nWBC (× 109/L) (reference range 3.5–9.5 × 109/L) Normal 3.33 3.47 Normal\nLymphocytes (%) (reference range 20–40%) Normal 17.5% Normal Normal\nHsCRP (mg/L) (reference range 0–5 mg/L) 6.65 23.6 Not available 12.2\nRespiratory pathogens* Negative Negative Not available Negative\nPET/CT findings Number of affected lobes 2 (RUL, LLL) 5 (all lobes) 3 (RUL, RLL, LLL) 3 (RML, RLL, LLL)\nLung CT features GGO GGO and consolidative opacities GGO GGO with interlobular septal thickening\nSUVmax 4.6 7.9 12.2 9.3\nLN involvement Absent Right subclavian region, mediastinum Right supraclavicular region, mediastinum Right subclavian region, mediastinum, right hilar region\nLN SUVmax – 7 5.4 5.5\nConcomitant diseases** Absent Absent Absent Absent"}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T9","span":{"begin":100,"end":106},"obj":"Body_part"},{"id":"T10","span":{"begin":133,"end":137},"obj":"Body_part"},{"id":"T11","span":{"begin":316,"end":327},"obj":"Body_part"},{"id":"T12","span":{"begin":621,"end":625},"obj":"Body_part"},{"id":"T13","span":{"begin":789,"end":800},"obj":"Body_part"},{"id":"T14","span":{"begin":831,"end":842},"obj":"Body_part"},{"id":"T15","span":{"begin":868,"end":879},"obj":"Body_part"}],"attributes":[{"id":"A9","pred":"fma_id","subj":"T9","obj":"http://purl.org/sig/ont/fma/fma228738"},{"id":"A10","pred":"fma_id","subj":"T10","obj":"http://purl.org/sig/ont/fma/fma25056"},{"id":"A11","pred":"fma_id","subj":"T11","obj":"http://purl.org/sig/ont/fma/fma62863"},{"id":"A12","pred":"fma_id","subj":"T12","obj":"http://purl.org/sig/ont/fma/fma7195"},{"id":"A13","pred":"fma_id","subj":"T13","obj":"http://purl.org/sig/ont/fma/fma9826"},{"id":"A14","pred":"fma_id","subj":"T14","obj":"http://purl.org/sig/ont/fma/fma9826"},{"id":"A15","pred":"fma_id","subj":"T15","obj":"http://purl.org/sig/ont/fma/fma9826"}],"text":"Patient number 1 2 3 4\nSex Man Man Woman Woman\nAge, years 57 56 61 48\nClinical symptoms Fever, sore throat Fever, fatigue, dizziness Back pain, dry cough Fever, chill, dry cough, myalgia, and fatigue\nHistory of staying in Wuhan Yes Yes Yes Yes\nWBC (× 109/L) (reference range 3.5–9.5 × 109/L) Normal 3.33 3.47 Normal\nLymphocytes (%) (reference range 20–40%) Normal 17.5% Normal Normal\nHsCRP (mg/L) (reference range 0–5 mg/L) 6.65 23.6 Not available 12.2\nRespiratory pathogens* Negative Negative Not available Negative\nPET/CT findings Number of affected lobes 2 (RUL, LLL) 5 (all lobes) 3 (RUL, RLL, LLL) 3 (RML, RLL, LLL)\nLung CT features GGO GGO and consolidative opacities GGO GGO with interlobular septal thickening\nSUVmax 4.6 7.9 12.2 9.3\nLN involvement Absent Right subclavian region, mediastinum Right supraclavicular region, mediastinum Right subclavian region, mediastinum, right hilar region\nLN SUVmax – 7 5.4 5.5\nConcomitant diseases** Absent Absent Absent Absent"}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T8","span":{"begin":100,"end":106},"obj":"Body_part"},{"id":"T9","span":{"begin":621,"end":625},"obj":"Body_part"},{"id":"T10","span":{"begin":789,"end":800},"obj":"Body_part"},{"id":"T11","span":{"begin":831,"end":842},"obj":"Body_part"},{"id":"T12","span":{"begin":868,"end":879},"obj":"Body_part"}],"attributes":[{"id":"A8","pred":"uberon_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/UBERON_0000341"},{"id":"A9","pred":"uberon_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"A10","pred":"uberon_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/UBERON_0003728"},{"id":"A11","pred":"uberon_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/UBERON_0003728"},{"id":"A12","pred":"uberon_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/UBERON_0003728"}],"text":"Patient number 1 2 3 4\nSex Man Man Woman Woman\nAge, years 57 56 61 48\nClinical symptoms Fever, sore throat Fever, fatigue, dizziness Back pain, dry cough Fever, chill, dry cough, myalgia, and fatigue\nHistory of staying in Wuhan Yes Yes Yes Yes\nWBC (× 109/L) (reference range 3.5–9.5 × 109/L) Normal 3.33 3.47 Normal\nLymphocytes (%) (reference range 20–40%) Normal 17.5% Normal Normal\nHsCRP (mg/L) (reference range 0–5 mg/L) 6.65 23.6 Not available 12.2\nRespiratory pathogens* Negative Negative Not available Negative\nPET/CT findings Number of affected lobes 2 (RUL, LLL) 5 (all lobes) 3 (RUL, RLL, LLL) 3 (RML, RLL, LLL)\nLung CT features GGO GGO and consolidative opacities GGO GGO with interlobular septal thickening\nSUVmax 4.6 7.9 12.2 9.3\nLN involvement Absent Right subclavian region, mediastinum Right supraclavicular region, mediastinum Right subclavian region, mediastinum, right hilar region\nLN SUVmax – 7 5.4 5.5\nConcomitant diseases** Absent Absent Absent Absent"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T15","span":{"begin":95,"end":106},"obj":"Disease"},{"id":"T16","span":{"begin":742,"end":744},"obj":"Disease"},{"id":"T17","span":{"begin":900,"end":902},"obj":"Disease"}],"attributes":[{"id":"A15","pred":"mondo_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/MONDO_0002258"},{"id":"A16","pred":"mondo_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/MONDO_0002486"},{"id":"A17","pred":"mondo_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/MONDO_0002486"}],"text":"Patient number 1 2 3 4\nSex Man Man Woman Woman\nAge, years 57 56 61 48\nClinical symptoms Fever, sore throat Fever, fatigue, dizziness Back pain, dry cough Fever, chill, dry cough, myalgia, and fatigue\nHistory of staying in Wuhan Yes Yes Yes Yes\nWBC (× 109/L) (reference range 3.5–9.5 × 109/L) Normal 3.33 3.47 Normal\nLymphocytes (%) (reference range 20–40%) Normal 17.5% Normal Normal\nHsCRP (mg/L) (reference range 0–5 mg/L) 6.65 23.6 Not available 12.2\nRespiratory pathogens* Negative Negative Not available Negative\nPET/CT findings Number of affected lobes 2 (RUL, LLL) 5 (all lobes) 3 (RUL, RLL, LLL) 3 (RML, RLL, LLL)\nLung CT features GGO GGO and consolidative opacities GGO GGO with interlobular septal thickening\nSUVmax 4.6 7.9 12.2 9.3\nLN involvement Absent Right subclavian region, mediastinum Right supraclavicular region, mediastinum Right subclavian region, mediastinum, right hilar region\nLN SUVmax – 7 5.4 5.5\nConcomitant diseases** Absent Absent Absent Absent"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T28","span":{"begin":19,"end":22},"obj":"http://purl.obolibrary.org/obo/CLO_0001302"},{"id":"T29","span":{"begin":67,"end":69},"obj":"http://purl.obolibrary.org/obo/CLO_0001382"},{"id":"T30","span":{"begin":621,"end":625},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T31","span":{"begin":621,"end":625},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"}],"text":"Patient number 1 2 3 4\nSex Man Man Woman Woman\nAge, years 57 56 61 48\nClinical symptoms Fever, sore throat Fever, fatigue, dizziness Back pain, dry cough Fever, chill, dry cough, myalgia, and fatigue\nHistory of staying in Wuhan Yes Yes Yes Yes\nWBC (× 109/L) (reference range 3.5–9.5 × 109/L) Normal 3.33 3.47 Normal\nLymphocytes (%) (reference range 20–40%) Normal 17.5% Normal Normal\nHsCRP (mg/L) (reference range 0–5 mg/L) 6.65 23.6 Not available 12.2\nRespiratory pathogens* Negative Negative Not available Negative\nPET/CT findings Number of affected lobes 2 (RUL, LLL) 5 (all lobes) 3 (RUL, RLL, LLL) 3 (RML, RLL, LLL)\nLung CT features GGO GGO and consolidative opacities GGO GGO with interlobular septal thickening\nSUVmax 4.6 7.9 12.2 9.3\nLN involvement Absent Right subclavian region, mediastinum Right supraclavicular region, mediastinum Right subclavian region, mediastinum, right hilar region\nLN SUVmax – 7 5.4 5.5\nConcomitant diseases** Absent Absent Absent Absent"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T10","span":{"begin":27,"end":30},"obj":"Chemical"},{"id":"T11","span":{"begin":31,"end":34},"obj":"Chemical"},{"id":"T12","span":{"begin":517,"end":520},"obj":"Chemical"},{"id":"T13","span":{"begin":566,"end":569},"obj":"Chemical"},{"id":"T14","span":{"begin":598,"end":601},"obj":"Chemical"},{"id":"T15","span":{"begin":616,"end":619},"obj":"Chemical"},{"id":"T16","span":{"begin":742,"end":744},"obj":"Chemical"},{"id":"T18","span":{"begin":900,"end":902},"obj":"Chemical"}],"attributes":[{"id":"A10","pred":"chebi_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/CHEBI_37684"},{"id":"A11","pred":"chebi_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/CHEBI_37684"},{"id":"A12","pred":"chebi_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/CHEBI_131701"},{"id":"A13","pred":"chebi_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/CHEBI_74541"},{"id":"A14","pred":"chebi_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/CHEBI_74541"},{"id":"A15","pred":"chebi_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/CHEBI_74541"},{"id":"A16","pred":"chebi_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/CHEBI_17571"},{"id":"A17","pred":"chebi_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/CHEBI_73529"},{"id":"A18","pred":"chebi_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/CHEBI_17571"},{"id":"A19","pred":"chebi_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/CHEBI_73529"}],"text":"Patient number 1 2 3 4\nSex Man Man Woman Woman\nAge, years 57 56 61 48\nClinical symptoms Fever, sore throat Fever, fatigue, dizziness Back pain, dry cough Fever, chill, dry cough, myalgia, and fatigue\nHistory of staying in Wuhan Yes Yes Yes Yes\nWBC (× 109/L) (reference range 3.5–9.5 × 109/L) Normal 3.33 3.47 Normal\nLymphocytes (%) (reference range 20–40%) Normal 17.5% Normal Normal\nHsCRP (mg/L) (reference range 0–5 mg/L) 6.65 23.6 Not available 12.2\nRespiratory pathogens* Negative Negative Not available Negative\nPET/CT findings Number of affected lobes 2 (RUL, LLL) 5 (all lobes) 3 (RUL, RLL, LLL) 3 (RML, RLL, LLL)\nLung CT features GGO GGO and consolidative opacities GGO GGO with interlobular septal thickening\nSUVmax 4.6 7.9 12.2 9.3\nLN involvement Absent Right subclavian region, mediastinum Right supraclavicular region, mediastinum Right subclavian region, mediastinum, right hilar region\nLN SUVmax – 7 5.4 5.5\nConcomitant diseases** Absent Absent Absent Absent"}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T9","span":{"begin":88,"end":93},"obj":"Phenotype"},{"id":"T10","span":{"begin":95,"end":106},"obj":"Phenotype"},{"id":"T11","span":{"begin":107,"end":112},"obj":"Phenotype"},{"id":"T12","span":{"begin":114,"end":121},"obj":"Phenotype"},{"id":"T13","span":{"begin":123,"end":132},"obj":"Phenotype"},{"id":"T14","span":{"begin":133,"end":142},"obj":"Phenotype"},{"id":"T15","span":{"begin":144,"end":153},"obj":"Phenotype"},{"id":"T16","span":{"begin":154,"end":159},"obj":"Phenotype"},{"id":"T17","span":{"begin":168,"end":177},"obj":"Phenotype"},{"id":"T18","span":{"begin":179,"end":186},"obj":"Phenotype"},{"id":"T19","span":{"begin":192,"end":199},"obj":"Phenotype"}],"attributes":[{"id":"A9","pred":"hp_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/HP_0001945"},{"id":"A10","pred":"hp_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/HP_0033050"},{"id":"A11","pred":"hp_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/HP_0001945"},{"id":"A12","pred":"hp_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/HP_0012378"},{"id":"A13","pred":"hp_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/HP_0002321"},{"id":"A14","pred":"hp_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/HP_0003418"},{"id":"A15","pred":"hp_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/HP_0031246"},{"id":"A16","pred":"hp_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/HP_0001945"},{"id":"A17","pred":"hp_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/HP_0031246"},{"id":"A18","pred":"hp_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/HP_0003326"},{"id":"A19","pred":"hp_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/HP_0012378"}],"text":"Patient number 1 2 3 4\nSex Man Man Woman Woman\nAge, years 57 56 61 48\nClinical symptoms Fever, sore throat Fever, fatigue, dizziness Back pain, dry cough Fever, chill, dry cough, myalgia, and fatigue\nHistory of staying in Wuhan Yes Yes Yes Yes\nWBC (× 109/L) (reference range 3.5–9.5 × 109/L) Normal 3.33 3.47 Normal\nLymphocytes (%) (reference range 20–40%) Normal 17.5% Normal Normal\nHsCRP (mg/L) (reference range 0–5 mg/L) 6.65 23.6 Not available 12.2\nRespiratory pathogens* Negative Negative Not available Negative\nPET/CT findings Number of affected lobes 2 (RUL, LLL) 5 (all lobes) 3 (RUL, RLL, LLL) 3 (RML, RLL, LLL)\nLung CT features GGO GGO and consolidative opacities GGO GGO with interlobular septal thickening\nSUVmax 4.6 7.9 12.2 9.3\nLN involvement Absent Right subclavian region, mediastinum Right supraclavicular region, mediastinum Right subclavian region, mediastinum, right hilar region\nLN SUVmax – 7 5.4 5.5\nConcomitant diseases** Absent Absent Absent Absent"}

{"project":"LitCovid-sentences","denotations":[{"id":"T25","span":{"begin":0,"end":22},"obj":"Sentence"},{"id":"T26","span":{"begin":23,"end":46},"obj":"Sentence"},{"id":"T27","span":{"begin":47,"end":69},"obj":"Sentence"},{"id":"T28","span":{"begin":70,"end":199},"obj":"Sentence"},{"id":"T29","span":{"begin":200,"end":243},"obj":"Sentence"},{"id":"T30","span":{"begin":244,"end":315},"obj":"Sentence"},{"id":"T31","span":{"begin":316,"end":383},"obj":"Sentence"},{"id":"T32","span":{"begin":384,"end":452},"obj":"Sentence"},{"id":"T33","span":{"begin":453,"end":516},"obj":"Sentence"},{"id":"T34","span":{"begin":517,"end":620},"obj":"Sentence"},{"id":"T35","span":{"begin":621,"end":717},"obj":"Sentence"},{"id":"T36","span":{"begin":718,"end":741},"obj":"Sentence"},{"id":"T37","span":{"begin":742,"end":899},"obj":"Sentence"},{"id":"T38","span":{"begin":900,"end":921},"obj":"Sentence"},{"id":"T39","span":{"begin":922,"end":972},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Patient number 1 2 3 4\nSex Man Man Woman Woman\nAge, years 57 56 61 48\nClinical symptoms Fever, sore throat Fever, fatigue, dizziness Back pain, dry cough Fever, chill, dry cough, myalgia, and fatigue\nHistory of staying in Wuhan Yes Yes Yes Yes\nWBC (× 109/L) (reference range 3.5–9.5 × 109/L) Normal 3.33 3.47 Normal\nLymphocytes (%) (reference range 20–40%) Normal 17.5% Normal Normal\nHsCRP (mg/L) (reference range 0–5 mg/L) 6.65 23.6 Not available 12.2\nRespiratory pathogens* Negative Negative Not available Negative\nPET/CT findings Number of affected lobes 2 (RUL, LLL) 5 (all lobes) 3 (RUL, RLL, LLL) 3 (RML, RLL, LLL)\nLung CT features GGO GGO and consolidative opacities GGO GGO with interlobular septal thickening\nSUVmax 4.6 7.9 12.2 9.3\nLN involvement Absent Right subclavian region, mediastinum Right supraclavicular region, mediastinum Right subclavian region, mediastinum, right hilar region\nLN SUVmax – 7 5.4 5.5\nConcomitant diseases** Absent Absent Absent Absent"}

{"project":"LitCovid-PubTator","denotations":[{"id":"73","span":{"begin":561,"end":604},"obj":"Gene"},{"id":"74","span":{"begin":0,"end":7},"obj":"Species"},{"id":"75","span":{"begin":35,"end":40},"obj":"Species"},{"id":"76","span":{"begin":41,"end":46},"obj":"Species"},{"id":"77","span":{"begin":453,"end":464},"obj":"Species"},{"id":"78","span":{"begin":88,"end":93},"obj":"Disease"},{"id":"79","span":{"begin":95,"end":112},"obj":"Disease"},{"id":"80","span":{"begin":114,"end":121},"obj":"Disease"},{"id":"81","span":{"begin":123,"end":142},"obj":"Disease"},{"id":"82","span":{"begin":144,"end":159},"obj":"Disease"},{"id":"83","span":{"begin":168,"end":177},"obj":"Disease"},{"id":"84","span":{"begin":179,"end":186},"obj":"Disease"},{"id":"85","span":{"begin":192,"end":199},"obj":"Disease"}],"attributes":[{"id":"A74","pred":"tao:has_database_id","subj":"74","obj":"Tax:9606"},{"id":"A75","pred":"tao:has_database_id","subj":"75","obj":"Tax:9606"},{"id":"A76","pred":"tao:has_database_id","subj":"76","obj":"Tax:9606"},{"id":"A77","pred":"tao:has_database_id","subj":"77","obj":"Tax:12814"},{"id":"A78","pred":"tao:has_database_id","subj":"78","obj":"MESH:D005334"},{"id":"A79","pred":"tao:has_database_id","subj":"79","obj":"MESH:D010608"},{"id":"A80","pred":"tao:has_database_id","subj":"80","obj":"MESH:D005221"},{"id":"A81","pred":"tao:has_database_id","subj":"81","obj":"MESH:D004244"},{"id":"A82","pred":"tao:has_database_id","subj":"82","obj":"MESH:D003371"},{"id":"A83","pred":"tao:has_database_id","subj":"83","obj":"MESH:D003371"},{"id":"A84","pred":"tao:has_database_id","subj":"84","obj":"MESH:D063806"},{"id":"A85","pred":"tao:has_database_id","subj":"85","obj":"MESH:D005221"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Patient number 1 2 3 4\nSex Man Man Woman Woman\nAge, years 57 56 61 48\nClinical symptoms Fever, sore throat Fever, fatigue, dizziness Back pain, dry cough Fever, chill, dry cough, myalgia, and fatigue\nHistory of staying in Wuhan Yes Yes Yes Yes\nWBC (× 109/L) (reference range 3.5–9.5 × 109/L) Normal 3.33 3.47 Normal\nLymphocytes (%) (reference range 20–40%) Normal 17.5% Normal Normal\nHsCRP (mg/L) (reference range 0–5 mg/L) 6.65 23.6 Not available 12.2\nRespiratory pathogens* Negative Negative Not available Negative\nPET/CT findings Number of affected lobes 2 (RUL, LLL) 5 (all lobes) 3 (RUL, RLL, LLL) 3 (RML, RLL, LLL)\nLung CT features GGO GGO and consolidative opacities GGO GGO with interlobular septal thickening\nSUVmax 4.6 7.9 12.2 9.3\nLN involvement Absent Right subclavian region, mediastinum Right supraclavicular region, mediastinum Right subclavian region, mediastinum, right hilar region\nLN SUVmax – 7 5.4 5.5\nConcomitant diseases** Absent Absent Absent Absent"}