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PMC:7080035 / 2425-4597 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 1453-1455 https://glytoucan.org/Structures/Glycans/G04616ST denotes LN
T2 1611-1613 https://glytoucan.org/Structures/Glycans/G04616ST denotes LN
T3 1983-1985 https://glytoucan.org/Structures/Glycans/G04616ST denotes LN

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T8 313-317 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T9 811-817 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T10 844-848 Body_part denotes Back http://purl.org/sig/ont/fma/fma25056
T11 1027-1038 Body_part denotes Lymphocytes http://purl.org/sig/ont/fma/fma62863
T12 1332-1336 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T13 1500-1511 Body_part denotes mediastinum http://purl.org/sig/ont/fma/fma9826
T14 1542-1553 Body_part denotes mediastinum http://purl.org/sig/ont/fma/fma9826
T15 1579-1590 Body_part denotes mediastinum http://purl.org/sig/ont/fma/fma9826
T16 1857-1860 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T17 1921-1937 Body_part denotes white blood cell http://purl.org/sig/ont/fma/fma62852
T18 1933-1937 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T19 1974-1981 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T20 1987-1997 Body_part denotes lymph node http://purl.org/sig/ont/fma/fma5034
T21 2004-2020 Body_part denotes right upper lobe http://purl.org/sig/ont/fma/fma7333
T22 2027-2044 Body_part denotes right middle lobe http://purl.org/sig/ont/fma/fma7383
T23 2051-2067 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337
T24 2074-2089 Body_part denotes left upper lobe http://purl.org/sig/ont/fma/fma7370
T25 2096-2111 Body_part denotes left lower lobe http://purl.org/sig/ont/fma/fma7371

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T7 313-317 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T8 811-817 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T9 1332-1336 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T10 1500-1511 Body_part denotes mediastinum http://purl.obolibrary.org/obo/UBERON_0003728
T11 1542-1553 Body_part denotes mediastinum http://purl.obolibrary.org/obo/UBERON_0003728
T12 1579-1590 Body_part denotes mediastinum http://purl.obolibrary.org/obo/UBERON_0003728
T13 1927-1932 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T14 1987-1997 Body_part denotes lymph node http://purl.obolibrary.org/obo/UBERON_0000029
T15 1987-1992 Body_part denotes lymph http://purl.obolibrary.org/obo/UBERON_0002391
T16 2016-2020 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T17 2040-2044 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T18 2063-2067 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T19 2085-2089 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T20 2107-2111 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T12 382-390 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 621-629 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T14 702-710 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T15 806-817 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T16 1453-1455 Disease denotes LN http://purl.obolibrary.org/obo/MONDO_0002486
T17 1611-1613 Disease denotes LN http://purl.obolibrary.org/obo/MONDO_0002486
T18 1740-1761 Disease denotes Mycoplasma pneumoniae http://purl.obolibrary.org/obo/MONDO_0005867
T19 1763-1783 Disease denotes Chlamydia pneumoniae http://purl.obolibrary.org/obo/MONDO_0025598
T20 1896-1906 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T21 1983-1985 Disease denotes LN http://purl.obolibrary.org/obo/MONDO_0002486

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T22 130-137 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T23 313-317 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T24 313-317 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T25 431-436 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T26 462-463 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T27 606-607 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 730-733 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3 4
T29 778-780 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T30 1332-1336 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T31 1332-1336 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T32 1819-1824 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T33 1840-1841 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T34 1842-1847 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T35 1927-1932 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T36 1933-1937 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T37 1987-1997 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph node

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T7 183-186 Chemical denotes PET http://purl.obolibrary.org/obo/CHEBI_131701
T8 227-230 Chemical denotes PET http://purl.obolibrary.org/obo/CHEBI_131701
T9 667-670 Chemical denotes PET http://purl.obolibrary.org/obo/CHEBI_131701
T10 738-741 Chemical denotes Man http://purl.obolibrary.org/obo/CHEBI_37684
T11 742-745 Chemical denotes Man http://purl.obolibrary.org/obo/CHEBI_37684
T12 1228-1231 Chemical denotes PET http://purl.obolibrary.org/obo/CHEBI_131701
T13 1277-1280 Chemical denotes LLL http://purl.obolibrary.org/obo/CHEBI_74541
T14 1309-1312 Chemical denotes LLL http://purl.obolibrary.org/obo/CHEBI_74541
T15 1327-1330 Chemical denotes LLL http://purl.obolibrary.org/obo/CHEBI_74541
T16 1453-1455 Chemical denotes LN http://purl.obolibrary.org/obo/CHEBI_17571|http://purl.obolibrary.org/obo/CHEBI_73529
T18 1611-1613 Chemical denotes LN http://purl.obolibrary.org/obo/CHEBI_17571|http://purl.obolibrary.org/obo/CHEBI_73529
T20 1974-1981 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T21 1983-1985 Chemical denotes LN http://purl.obolibrary.org/obo/CHEBI_17571|http://purl.obolibrary.org/obo/CHEBI_73529
T23 2091-2094 Chemical denotes LLL http://purl.obolibrary.org/obo/CHEBI_74541

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T7 88-93 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T8 327-332 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T9 799-804 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T10 806-817 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T11 818-823 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T12 825-832 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T13 834-843 Phenotype denotes dizziness http://purl.obolibrary.org/obo/HP_0002321
T14 844-853 Phenotype denotes Back pain http://purl.obolibrary.org/obo/HP_0003418
T15 855-864 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T16 865-870 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T17 879-888 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T18 890-897 Phenotype denotes myalgia http://purl.obolibrary.org/obo/HP_0003326
T19 903-910 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T20 1751-1761 Phenotype denotes pneumoniae http://purl.obolibrary.org/obo/HP_0002090
T21 1773-1783 Phenotype denotes pneumoniae http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T4 2160-2166 http://purl.obolibrary.org/obo/GO_0098739 denotes uptake
T5 2160-2166 http://purl.obolibrary.org/obo/GO_0098657 denotes uptake

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T21 0-198 Sentence denotes In general, the identification of pulmonary GGOs or patients presenting with persistent fever should prompt additional diagnostic testing for differential diagnosis—including 18F-FDG PET/CT imaging.
T22 199-461 Sentence denotes Here, we report the 18F-FDG PET/CT findings from four patients who were admitted to the Wuhan Union Hospital with lung GGOs and fever between January 13 and January 20, 2020—when the COVID-19 outbreak was still unrecognized and the virus infectivity was unknown.
T23 462-630 Sentence denotes A retrospective review of the patients’ medical history, clinical and laboratory data, as well as imaging findings (Table 1) strongly suggested a diagnosis of COVID-19.
T24 631-710 Sentence denotes Table 1 General characteristics and PET/CT findings of four cases with COVID-19
T25 711-733 Sentence denotes Patient number 1 2 3 4
T26 734-757 Sentence denotes Sex Man Man Woman Woman
T27 758-780 Sentence denotes Age, years 57 56 61 48
T28 781-910 Sentence denotes Clinical symptoms Fever, sore throat Fever, fatigue, dizziness Back pain, dry cough Fever, chill, dry cough, myalgia, and fatigue
T29 911-954 Sentence denotes History of staying in Wuhan Yes Yes Yes Yes
T30 955-1026 Sentence denotes WBC (× 109/L) (reference range 3.5–9.5 × 109/L) Normal 3.33 3.47 Normal
T31 1027-1094 Sentence denotes Lymphocytes (%) (reference range 20–40%) Normal 17.5% Normal Normal
T32 1095-1163 Sentence denotes HsCRP (mg/L) (reference range 0–5 mg/L) 6.65 23.6 Not available 12.2
T33 1164-1227 Sentence denotes Respiratory pathogens* Negative Negative Not available Negative
T34 1228-1331 Sentence denotes PET/CT findings Number of affected lobes 2 (RUL, LLL) 5 (all lobes) 3 (RUL, RLL, LLL) 3 (RML, RLL, LLL)
T35 1332-1428 Sentence denotes Lung CT features GGO GGO and consolidative opacities GGO GGO with interlobular septal thickening
T36 1429-1452 Sentence denotes SUVmax 4.6 7.9 12.2 9.3
T37 1453-1610 Sentence denotes LN involvement Absent Right subclavian region, mediastinum Right supraclavicular region, mediastinum Right subclavian region, mediastinum, right hilar region
T38 1611-1632 Sentence denotes LN SUVmax – 7 5.4 5.5
T39 1633-1683 Sentence denotes Concomitant diseases** Absent Absent Absent Absent
T40 1684-1739 Sentence denotes *The following respiratory pathogens were investigated:
T41 1740-1860 Sentence denotes Mycoplasma pneumoniae, Chlamydia pneumoniae, adenovirus, respiratory syncytial virus, and Coxsackie B-virus specific IgM
T42 1861-1915 Sentence denotes **Including malignancies and other infectious diseases
T43 1916-2172 Sentence denotes WBC, white blood cell; hsCRP, high-sensitivity C-reactive protein; LN, lymph node; RUL, right upper lobe; RML, right middle lobe; RLL, right lower lobe; LUL, left upper lobe; LLL, left lower lobe; GGO, ground-glass opacities; SUV, standardized uptake value

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
73 1272-1315 Gene denotes RUL, LLL) 5 (all lobes) 3 (RUL, RLL, LLL) 3
74 711-718 Species denotes Patient Tax:9606
75 746-751 Species denotes Woman Tax:9606
76 752-757 Species denotes Woman Tax:9606
77 1164-1175 Species denotes Respiratory Tax:12814
78 799-804 Disease denotes Fever MESH:D005334
79 806-823 Disease denotes sore throat Fever MESH:D010608
80 825-832 Disease denotes fatigue MESH:D005221
81 834-853 Disease denotes dizziness Back pain MESH:D004244
82 855-870 Disease denotes dry cough Fever MESH:D003371
83 879-888 Disease denotes dry cough MESH:D003371
84 890-897 Disease denotes myalgia MESH:D063806
85 903-910 Disease denotes fatigue MESH:D005221
87 702-710 Disease denotes COVID-19 MESH:C000657245
93 1740-1761 Species denotes Mycoplasma pneumoniae Tax:2104
94 1763-1783 Species denotes Chlamydia pneumoniae Tax:83558
95 1785-1795 Species denotes adenovirus Tax:10508
96 1797-1824 Species denotes respiratory syncytial virus Tax:12814
97 1699-1710 Species denotes respiratory Tax:12814
100 1873-1885 Disease denotes malignancies MESH:D009369
101 1896-1915 Disease denotes infectious diseases MESH:D003141
103 1963-1981 Gene denotes C-reactive protein Gene:1401
114 52-60 Species denotes patients Tax:9606
115 253-261 Species denotes patients Tax:9606
116 492-500 Species denotes patients Tax:9606
117 175-182 Chemical denotes 18F-FDG MESH:D019788
118 219-226 Chemical denotes 18F-FDG MESH:D019788
119 34-48 Disease denotes pulmonary GGOs MESH:D008171
120 88-93 Disease denotes fever MESH:D005334
121 327-332 Disease denotes fever MESH:D005334
122 382-390 Disease denotes COVID-19 MESH:C000657245
123 621-629 Disease denotes COVID-19 MESH:C000657245