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PMC:7079563 / 1900-9149 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
69 29-39 Disease denotes pneumonias MESH:D011014
71 110-119 Disease denotes pneumonia MESH:D011014
98 344-389 Species denotes Severe acute respiratory syndrome coronavirus Tax:694009
99 391-399 Species denotes SARS-CoV Tax:694009
100 406-461 Species denotes Middle-East respiratory syndrome coronavirus (MERS-CoV) Tax:1335626
101 463-484 Species denotes avian influenza virus Tax:11309
102 537-552 Species denotes new coronavirus Tax:2697049
103 571-580 Species denotes 2019-nCoV Tax:2697049
104 1102-1110 Species denotes patients Tax:9606
105 1132-1141 Species denotes 2019-nCoV Tax:2697049
106 1246-1251 Species denotes human Tax:9606
107 1255-1260 Species denotes human Tax:9606
108 1314-1323 Species denotes 2019-nCoV Tax:2697049
109 1329-1337 Species denotes patients Tax:9606
110 1360-1365 Species denotes human Tax:9606
111 1369-1374 Species denotes human Tax:9606
112 1431-1440 Species denotes 2019-nCoV Tax:2697049
113 1472-1477 Species denotes human Tax:9606
114 1481-1486 Species denotes human Tax:9606
115 1676-1685 Species denotes 2019-nCoV Tax:2697049
116 1835-1843 Species denotes patients Tax:9606
117 1926-1943 Species denotes novel coronavirus Tax:2697049
118 153-162 Disease denotes pneumonia MESH:D011014
119 745-754 Disease denotes pneumonia MESH:D011014
120 814-819 Disease denotes death MESH:D003643
121 1088-1098 Disease denotes infections MESH:D007239
122 1120-1128 Disease denotes infected MESH:D007239
123 1302-1310 Disease denotes infected MESH:D007239
162 2985-2993 Species denotes patients Tax:9606
163 3039-3047 Species denotes patients Tax:9606
164 3230-3238 Species denotes patients Tax:9606
165 3380-3397 Species denotes novel coronavirus Tax:2697049
166 3454-3462 Species denotes patients Tax:9606
167 3508-3525 Species denotes novel coronavirus Tax:2697049
168 3650-3672 Species denotes 2019 novel coronavirus Tax:2697049
169 3674-3683 Species denotes 2019-nCoV Tax:2697049
170 3729-3738 Species denotes 2019-nCoV Tax:2697049
171 3825-3832 Species denotes patient Tax:9606
172 3858-3863 Species denotes woman Tax:9606
173 3996-4005 Species denotes 2019-nCoV Tax:2697049
174 4139-4146 Species denotes patient Tax:9606
175 4161-4166 Species denotes woman Tax:9606
176 4242-4250 Species denotes patients Tax:9606
177 4476-4481 Species denotes human Tax:9606
178 4485-4490 Species denotes human Tax:9606
179 4648-4657 Species denotes 2019-nCoV Tax:2697049
180 4758-4767 Species denotes 2019-nCoV Tax:2697049
181 4835-4840 Species denotes human Tax:9606
182 4844-4849 Species denotes human Tax:9606
183 4976-4985 Species denotes 2019-nCoV Tax:2697049
184 5203-5212 Species denotes 2019-nCoV Tax:2697049
185 5428-5436 Species denotes patients Tax:9606
186 5452-5461 Species denotes 2019-nCoV Tax:2697049
187 5626-5635 Species denotes 2019-nCoV Tax:2697049
188 2945-2954 Disease denotes pneumonia MESH:D011014
189 3079-3088 Disease denotes pneumonia MESH:D011014
190 3244-3253 Disease denotes pneumonia MESH:D011014
191 3491-3500 Disease denotes infection MESH:D007239
192 3581-3586 Disease denotes death MESH:D003643
193 3780-3788 Disease denotes infected MESH:D007239
194 4355-4365 Disease denotes infections MESH:D007239
195 4630-4638 Disease denotes infected MESH:D007239
196 4886-4891 Disease denotes death MESH:D003643
197 5501-5510 Disease denotes pneumonia MESH:D011014
198 5670-5676 Disease denotes deaths MESH:D003643
199 5720-5729 Disease denotes infection MESH:D007239
201 2803-2812 Species denotes 2019-nCoV Tax:2697049
207 2460-2469 Species denotes 2019-nCoV Tax:2697049
208 2680-2686 Species denotes people Tax:9606
209 2085-2104 Disease denotes 2019-nCoV pneumonia MESH:C000657245
210 2245-2251 Disease denotes deaths MESH:D003643
211 2355-2374 Disease denotes 2019-nCoV infection MESH:C000657245
217 5825-5834 Species denotes 2019-nCoV Tax:2697049
218 6075-6083 Species denotes patients Tax:9606
219 6126-6134 Species denotes patients Tax:9606
220 6765-6770 Disease denotes fever MESH:D005334
221 6814-6823 Disease denotes infection MESH:D007239

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T9 29-39 Disease denotes pneumonias http://purl.obolibrary.org/obo/MONDO_0005249
T10 110-119 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T11 153-162 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T12 344-377 Disease denotes Severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T13 391-399 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T14 463-478 Disease denotes avian influenza http://purl.obolibrary.org/obo/MONDO_0018695
T15 469-478 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T16 745-754 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T17 1088-1101 Disease denotes infections in http://purl.obolibrary.org/obo/MONDO_0005550
T18 2095-2104 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T19 2355-2374 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T20 2365-2374 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T21 2945-2954 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T22 3079-3088 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T23 3244-3253 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T24 3491-3500 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T25 4355-4368 Disease denotes infections in http://purl.obolibrary.org/obo/MONDO_0005550
T26 5501-5510 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T27 5720-5729 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T28 6814-6823 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T11 274-275 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 479-484 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T13 535-536 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 678-690 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T15 732-734 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T16 742-744 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T17 975-976 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 1246-1251 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T19 1255-1260 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T20 1360-1365 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T21 1369-1374 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T22 1472-1477 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T23 1481-1486 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T24 1710-1713 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T25 1959-1966 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T26 2911-2912 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 2971-2972 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T28 2995-2997 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T29 3206-3207 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 3281-3284 http://purl.obolibrary.org/obo/CLO_0001053 denotes 121
T31 3425-3433 http://purl.obolibrary.org/obo/OBI_0100026 denotes organism
T32 3425-3433 http://purl.obolibrary.org/obo/UBERON_0000468 denotes organism
T33 3435-3437 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T34 3451-3453 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T35 3608-3613 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T36 3836-3837 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 4011-4014 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T38 4151-4152 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 4476-4481 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T40 4485-4490 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T41 4835-4843 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human to
T42 4844-4849 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T43 4864-4866 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T44 5535-5537 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T45 5893-5894 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 6509-6510 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T7 1976-1981 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T8 2755-2763 Chemical denotes carriers http://purl.obolibrary.org/obo/CHEBI_78059

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T12 0-59 Sentence denotes 1 Emergence and epidemic of pneumonias caused by 2019-nCoV
T13 61-119 Sentence denotes 1.1 Pathogen identification and transmission of pneumonia
T14 120-238 Sentence denotes On 31th December 2019, the first pneumonia case of unknown etiology was reported in Wuhan City, Hubei Province, China.
T15 239-525 Sentence denotes In order to identify the etiology, a number of possible etiological agents were ruled out, including the Severe acute respiratory syndrome coronavirus (SARS-CoV), the Middle-East respiratory syndrome coronavirus (MERS-CoV), avian influenza virus, and other common respiratory pathogens.
T16 526-717 Sentence denotes Finally, a new coronavirus, temporally named 2019-nCoV, was identified to be the pathogen responsible for disease, and it was announced by World Health Organization (WHO) on 12th January [3].
T17 718-824 Sentence denotes As of January 11, 2020, 41 pneumonia cases were diagnosed, including seven severe cases and one death [2].
T18 825-933 Sentence denotes At that time, there was no evidence of person-to-person transmission according to the scientific literature.
T19 934-1021 Sentence denotes The first “super-spreading” event became a hallmark of the epidemiology of the disease.
T20 1022-1278 Sentence denotes On January 20, 2020, in epidemiological investigations, two local infections in patients who were infected by 2019-nCoV without physical visits to Wuhan were reported in Guangdong Province, which confirmed the occurrence of human-to-human transmission [4].
T21 1279-1389 Sentence denotes Then, 14 medical staff infected by 2019-nCoV from patients further confirmed the human-to-human contagion [5].
T22 1390-1557 Sentence denotes On 21th January 2020, WHO announced that 2019-nCoV was possibly sustained through human-to-human transmission, warning the public to take self-protection measures [3].
T23 1558-1639 Sentence denotes The first of many cases, this disease was rapidly shown to cause an epidemic [6].
T24 1640-1844 Sentence denotes Due to the high transmissibility of 2019-nCoV, the Chinese government has taken quick action and various measures to deal with the epidemic, trying to prevent spread of the outbreak and to treat patients.
T25 1845-2010 Sentence denotes Researchers put much effort to understand the origin and pathophysiology of this novel coronavirus, and have been testing multiple drugs to screen effective therapy.
T26 2012-2050 Sentence denotes 1.2 Current situation of the epidemic
T27 2051-2157 Sentence denotes Until February 6, 2020, confirmed 2019-nCoV pneumonia cases were increasing with worrisome speed in China.
T28 2158-2296 Sentence denotes As of 5th February, there were 24,377 cases confirmed in mainland China, including 492 deaths, 3219 severe cases, and 901 cured cases [6].
T29 2297-2328 Sentence denotes The fatality rate was about 2%.
T30 2329-2429 Sentence denotes In addition, 175 cases of 2019-nCoV infection were confirmed in 24 other countries around the world.
T31 2430-2506 Sentence denotes The typical events during the 2019-nCoV outbreak are summarized in Table 1 .
T32 2507-2616 Sentence denotes The period from the end of December 2019 to January 2020 was the “Spring Festival travel rush” time in China.
T33 2617-2780 Sentence denotes Although the government issued an order to control the flow of people, the disease spread rapidly to other cities because of asymptomatic carriers [[7], [8], [9]].
T34 2781-2813 Sentence denotes Table 1 Key events of 2019-nCoV.
T35 2814-2829 Sentence denotes Date Key events
T36 2830-2955 Sentence denotes 31 December 2019 The Health Commission of Hubei province, China, first announced a cluster of unexplained cases of pneumonia.
T37 2956-3172 Sentence denotes 3 January 2020 A total of 44 patients (11 are severely ill, while the remaining 33 patients are in stable condition.) with pneumonia of unknown etiology have been reported to WHO by the national authorities in China.
T38 3173-3319 Sentence denotes 5 January 2020 The WHO published a document detailing 44 patients had “pneumonia of unknown etiology”, with 121 close contacts under surveillance.
T39 3320-3434 Sentence denotes 8 January 2020 The genetic sequencing demonstrated that the novel coronavirus is the potential causative organism.
T40 3435-3587 Sentence denotes 11 January 2020 41 patients have been diagnosed to have infection of the novel coronavirus, with 763 close contacts, 7 severe cases and the first death.
T41 3588-3685 Sentence denotes 12 January 2020 The virus was tentatively named by WHO as the 2019 novel coronavirus (2019-nCoV).
T42 3686-3761 Sentence denotes 13 January 2020 The first imported case of 2019-nCoV was found in Thailand.
T43 3762-3820 Sentence denotes This is the first infected person diagnosed outside China.
T44 3821-3908 Sentence denotes The patient is a 61-year-old Chinese woman living in Wuhan City, Hubei Province, China.
T45 3909-3958 Sentence denotes 16 January 2020 The first case reported in Japan.
T46 3959-4046 Sentence denotes This is the second confirmed case of 2019-nCoV that has been detected outside of China.
T47 4047-4084 Sentence denotes The person travelled to Wuhan, China.
T48 4085-4134 Sentence denotes 19 January 2020 The first case reported in Korea.
T49 4135-4220 Sentence denotes The patient was a Chinese woman who flew from Wuhan to Incheon International Airport.
T50 4221-4271 Sentence denotes Four other suspected patients were being examined.
T51 4272-4328 Sentence denotes Furthermore, the first case reported in Shenzhen, China.
T52 4329-4542 Sentence denotes 20 January 2020 Two local infections in the Chinese province of Guangdong with no direct visit to Wuhan were the first confirmed the occurrence of human-to-human transmission through epidemiological investigation.
T53 4543-4590 Sentence denotes And the first case reported in Shanghai, China.
T54 4591-4667 Sentence denotes 21 January 2020 15 health-care workers infected with the 2019-nCoV in Wuhan.
T55 4668-4782 Sentence denotes Zhejiang Province, Henan Province, Sichuan Province and Taiwa confirmed the first case of 2019-nCoV, respectively.
T56 4783-4863 Sentence denotes The WHO announced that there was possible sustained human to-human transmission.
T57 4864-4910 Sentence denotes 22–23 January 2020 17 death in Hubei Province.
T58 4911-4986 Sentence denotes America and Macao and Many provinces confirmed the first case of 2019-nCoV.
T59 4987-5227 Sentence denotes Such as Shandong Province, Yunnan Province, Hunan Province, America, Macao, Anhui Province, Fujian Province, Guizhou Province, Shanxi Province, Ningxia Autonomous Region and Hebei Province reported the first case of 2019-nCoV, respectively.
T60 5228-5381 Sentence denotes 23 January 2020 the local government in Wuhan announced the suspension of public transportation, with closure of airports, railway stations, and highways
T61 5382-5470 Sentence denotes 24 January 2020 Zhejiang and Shanghai’s first patients diagnosed with 2019-nCoV recover.
T62 5471-5609 Sentence denotes 5 February 2020 The confirmed pneumonia cases are increasing in 34 provinces, municipalities, and special administrative regions in China.
T63 5610-5706 Sentence denotes 24,377 cases of 2019-nCoV confirmed in China, including 492 deaths, 3219 serious, and 901 cured.
T64 5707-5781 Sentence denotes 175 cases of infection were confirmed in 24 other cities around the world.
T65 5783-5807 Sentence denotes 1.3 Preventive measures
T66 5808-5922 Sentence denotes To deal with the 2019-nCoV epidemic, the central and local governments of China took a series of drastic measures.
T67 5923-6191 Sentence denotes First of all, Chinese health authorities conducted an immediate investigation to characterize and control the disease, including isolation of suspected patients, monitoring of contact clinical status of patients, and developing diagnostic and treatment procedures [5].
T68 6192-6423 Sentence denotes In addition, on January 23, 2020, the local government of Wuhan announced the suspension of public transportation, closing airports, railway stations, and highways in the city, in order to prevent further disease transmission [10].
T69 6424-6608 Sentence denotes Subsequently, most provinces in China claimed “Level I Emergency Response” by taking a series of measures such as suspending public transportation and setting up community quarantines.
T70 6609-6758 Sentence denotes Particularly, the list of the first-level designated hospitals was announced, and epidemic prevention training for primary medical staff was started.
T71 6759-7035 Sentence denotes Since fever is one of typical clinical symptoms of the infection, temperature detection of incoming and outgoing personnel was implemented comprehensively in railway stations, passenger stations and other public places, in order to screen suspected cases as early as possible.
T72 7036-7249 Sentence denotes In addition, many other compulsory measures limiting population mobility, such as cancellation of mass gatherings, school closures, work-from-home arrangements, was taken to reduce within-population contact rates.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T4 29-39 Phenotype denotes pneumonias http://purl.obolibrary.org/obo/HP_0002090
T5 110-119 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T6 153-162 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T7 745-754 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T8 2095-2104 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T9 2945-2954 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T10 3079-3088 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T11 3244-3253 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T12 5501-5510 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T13 6765-6770 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945

2_test

Id Subject Object Predicate Lexical cue
32087334-31978945-69694984 821-822 31978945 denotes 2
32087334-31986261-69694985 1275-1276 31986261 denotes 4
32087334-31986257-69694986 1386-1387 31986257 denotes 5
32087334-16647974-69694987 2766-2767 16647974 denotes 7
32087334-31949058-69694988 2776-2777 31949058 denotes 9
32087334-31986257-69694989 6188-6189 31986257 denotes 5