PMC:7079563 / 14562-15530 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"417","span":{"begin":537,"end":546},"obj":"Species"},{"id":"418","span":{"begin":629,"end":638},"obj":"Species"},{"id":"419","span":{"begin":651,"end":655},"obj":"Species"},{"id":"420","span":{"begin":729,"end":738},"obj":"Species"},{"id":"421","span":{"begin":835,"end":846},"obj":"Species"},{"id":"422","span":{"begin":848,"end":872},"obj":"Species"},{"id":"423","span":{"begin":899,"end":903},"obj":"Species"},{"id":"437","span":{"begin":0,"end":9},"obj":"Species"},{"id":"438","span":{"begin":40,"end":48},"obj":"Species"},{"id":"439","span":{"begin":75,"end":78},"obj":"Species"},{"id":"440","span":{"begin":123,"end":132},"obj":"Species"},{"id":"441","span":{"begin":166,"end":175},"obj":"Species"},{"id":"442","span":{"begin":180,"end":188},"obj":"Species"},{"id":"443","span":{"begin":251,"end":264},"obj":"Species"},{"id":"444","span":{"begin":270,"end":273},"obj":"Species"},{"id":"445","span":{"begin":381,"end":390},"obj":"Species"},{"id":"446","span":{"begin":410,"end":434},"obj":"Species"},{"id":"447","span":{"begin":436,"end":445},"obj":"Species"},{"id":"448","span":{"begin":79,"end":85},"obj":"CellLine"},{"id":"449","span":{"begin":274,"end":280},"obj":"CellLine"}],"attributes":[{"id":"A417","pred":"tao:has_database_id","subj":"417","obj":"Tax:2697049"},{"id":"A418","pred":"tao:has_database_id","subj":"418","obj":"Tax:2697049"},{"id":"A419","pred":"tao:has_database_id","subj":"419","obj":"Tax:11118"},{"id":"A420","pred":"tao:has_database_id","subj":"420","obj":"Tax:2697049"},{"id":"A421","pred":"tao:has_database_id","subj":"421","obj":"Tax:694448"},{"id":"A422","pred":"tao:has_database_id","subj":"422","obj":"Tax:694009"},{"id":"A423","pred":"tao:has_database_id","subj":"423","obj":"Tax:11118"},{"id":"A437","pred":"tao:has_database_id","subj":"437","obj":"Tax:2697049"},{"id":"A438","pred":"tao:has_database_id","subj":"438","obj":"Tax:694009"},{"id":"A439","pred":"tao:has_database_id","subj":"439","obj":"Tax:11118"},{"id":"A440","pred":"tao:has_database_id","subj":"440","obj":"Tax:2697049"},{"id":"A441","pred":"tao:has_database_id","subj":"441","obj":"Tax:694009"},{"id":"A442","pred":"tao:has_database_id","subj":"442","obj":"Tax:694009"},{"id":"A443","pred":"tao:has_database_id","subj":"443","obj":"Tax:11118"},{"id":"A444","pred":"tao:has_database_id","subj":"444","obj":"Tax:11118"},{"id":"A445","pred":"tao:has_database_id","subj":"445","obj":"Tax:2697049"},{"id":"A446","pred":"tao:has_database_id","subj":"446","obj":"Tax:694009"},{"id":"A447","pred":"tao:has_database_id","subj":"447","obj":"Tax:694009"},{"id":"A448","pred":"tao:has_database_id","subj":"448","obj":"CVCL:AR51"},{"id":"A449","pred":"tao:has_database_id","subj":"449","obj":"CVCL:AR51"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"2019-nCoV shares 79.5% nt identity with SARS-CoV and 96% identity with bat-CoV-RaTG13 [20]. The genetic characteristics of 2019-nCoV are significantly different from SARSr-CoV and SARS-CoV, which are closely related only to the specific bat SARS-like coronaviruses, bat-CoV-RaTG13 and bat-SL-CoVZC45, with 96% and 86.9% nucleotide sequence identities, respectively [20]. Therefore 2019-nCoV is considered as a SARS related coronavirus (SARSr-CoV) by pairwise protein sequence analysis (Fig. 1 ) [20].\nFig. 1 The evolutionary position of 2019-nCoV. The phylogenetic tree was constructed based on the complete genomic sequences of 2019-nCoV and related CoVs by using the neighbor-joining (NJ) method with 1000 bootstrap. The novel 2019-nCoV detected strains were indicated in bold with solid squares. Abbreviations are as follows: SARSr coronavirus, SARS-related coronavirus. The accession numbers of CoVs were showed in the figure. Bootstrap values above 50 were shown."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T23","span":{"begin":320,"end":330},"obj":"Body_part"},{"id":"T24","span":{"begin":459,"end":466},"obj":"Body_part"}],"attributes":[{"id":"A23","pred":"fma_id","subj":"T23","obj":"http://purl.org/sig/ont/fma/fma82740"},{"id":"A24","pred":"fma_id","subj":"T24","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"2019-nCoV shares 79.5% nt identity with SARS-CoV and 96% identity with bat-CoV-RaTG13 [20]. The genetic characteristics of 2019-nCoV are significantly different from SARSr-CoV and SARS-CoV, which are closely related only to the specific bat SARS-like coronaviruses, bat-CoV-RaTG13 and bat-SL-CoVZC45, with 96% and 86.9% nucleotide sequence identities, respectively [20]. Therefore 2019-nCoV is considered as a SARS related coronavirus (SARSr-CoV) by pairwise protein sequence analysis (Fig. 1 ) [20].\nFig. 1 The evolutionary position of 2019-nCoV. The phylogenetic tree was constructed based on the complete genomic sequences of 2019-nCoV and related CoVs by using the neighbor-joining (NJ) method with 1000 bootstrap. The novel 2019-nCoV detected strains were indicated in bold with solid squares. Abbreviations are as follows: SARSr coronavirus, SARS-related coronavirus. The accession numbers of CoVs were showed in the figure. Bootstrap values above 50 were shown."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T63","span":{"begin":40,"end":48},"obj":"Disease"},{"id":"T64","span":{"begin":180,"end":188},"obj":"Disease"},{"id":"T65","span":{"begin":241,"end":245},"obj":"Disease"},{"id":"T66","span":{"begin":410,"end":414},"obj":"Disease"},{"id":"T67","span":{"begin":848,"end":852},"obj":"Disease"}],"attributes":[{"id":"A63","pred":"mondo_id","subj":"T63","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A64","pred":"mondo_id","subj":"T64","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A65","pred":"mondo_id","subj":"T65","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A66","pred":"mondo_id","subj":"T66","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A67","pred":"mondo_id","subj":"T67","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"2019-nCoV shares 79.5% nt identity with SARS-CoV and 96% identity with bat-CoV-RaTG13 [20]. The genetic characteristics of 2019-nCoV are significantly different from SARSr-CoV and SARS-CoV, which are closely related only to the specific bat SARS-like coronaviruses, bat-CoV-RaTG13 and bat-SL-CoVZC45, with 96% and 86.9% nucleotide sequence identities, respectively [20]. Therefore 2019-nCoV is considered as a SARS related coronavirus (SARSr-CoV) by pairwise protein sequence analysis (Fig. 1 ) [20].\nFig. 1 The evolutionary position of 2019-nCoV. The phylogenetic tree was constructed based on the complete genomic sequences of 2019-nCoV and related CoVs by using the neighbor-joining (NJ) method with 1000 bootstrap. The novel 2019-nCoV detected strains were indicated in bold with solid squares. Abbreviations are as follows: SARSr coronavirus, SARS-related coronavirus. The accession numbers of CoVs were showed in the figure. Bootstrap values above 50 were shown."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T84","span":{"begin":71,"end":74},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T85","span":{"begin":237,"end":240},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T86","span":{"begin":266,"end":269},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T87","span":{"begin":285,"end":288},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T88","span":{"begin":408,"end":409},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"2019-nCoV shares 79.5% nt identity with SARS-CoV and 96% identity with bat-CoV-RaTG13 [20]. The genetic characteristics of 2019-nCoV are significantly different from SARSr-CoV and SARS-CoV, which are closely related only to the specific bat SARS-like coronaviruses, bat-CoV-RaTG13 and bat-SL-CoVZC45, with 96% and 86.9% nucleotide sequence identities, respectively [20]. Therefore 2019-nCoV is considered as a SARS related coronavirus (SARSr-CoV) by pairwise protein sequence analysis (Fig. 1 ) [20].\nFig. 1 The evolutionary position of 2019-nCoV. The phylogenetic tree was constructed based on the complete genomic sequences of 2019-nCoV and related CoVs by using the neighbor-joining (NJ) method with 1000 bootstrap. The novel 2019-nCoV detected strains were indicated in bold with solid squares. Abbreviations are as follows: SARSr coronavirus, SARS-related coronavirus. The accession numbers of CoVs were showed in the figure. Bootstrap values above 50 were shown."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T10","span":{"begin":289,"end":291},"obj":"Chemical"},{"id":"T11","span":{"begin":320,"end":330},"obj":"Chemical"},{"id":"T12","span":{"begin":459,"end":466},"obj":"Chemical"}],"attributes":[{"id":"A10","pred":"chebi_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A11","pred":"chebi_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/CHEBI_36976"},{"id":"A12","pred":"chebi_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"}],"text":"2019-nCoV shares 79.5% nt identity with SARS-CoV and 96% identity with bat-CoV-RaTG13 [20]. The genetic characteristics of 2019-nCoV are significantly different from SARSr-CoV and SARS-CoV, which are closely related only to the specific bat SARS-like coronaviruses, bat-CoV-RaTG13 and bat-SL-CoVZC45, with 96% and 86.9% nucleotide sequence identities, respectively [20]. Therefore 2019-nCoV is considered as a SARS related coronavirus (SARSr-CoV) by pairwise protein sequence analysis (Fig. 1 ) [20].\nFig. 1 The evolutionary position of 2019-nCoV. The phylogenetic tree was constructed based on the complete genomic sequences of 2019-nCoV and related CoVs by using the neighbor-joining (NJ) method with 1000 bootstrap. The novel 2019-nCoV detected strains were indicated in bold with solid squares. Abbreviations are as follows: SARSr coronavirus, SARS-related coronavirus. The accession numbers of CoVs were showed in the figure. Bootstrap values above 50 were shown."}

{"project":"LitCovid-sentences","denotations":[{"id":"T108","span":{"begin":0,"end":91},"obj":"Sentence"},{"id":"T109","span":{"begin":92,"end":370},"obj":"Sentence"},{"id":"T110","span":{"begin":371,"end":500},"obj":"Sentence"},{"id":"T111","span":{"begin":501,"end":547},"obj":"Sentence"},{"id":"T112","span":{"begin":548,"end":718},"obj":"Sentence"},{"id":"T113","span":{"begin":719,"end":798},"obj":"Sentence"},{"id":"T114","span":{"begin":799,"end":873},"obj":"Sentence"},{"id":"T115","span":{"begin":874,"end":930},"obj":"Sentence"},{"id":"T116","span":{"begin":931,"end":968},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"2019-nCoV shares 79.5% nt identity with SARS-CoV and 96% identity with bat-CoV-RaTG13 [20]. The genetic characteristics of 2019-nCoV are significantly different from SARSr-CoV and SARS-CoV, which are closely related only to the specific bat SARS-like coronaviruses, bat-CoV-RaTG13 and bat-SL-CoVZC45, with 96% and 86.9% nucleotide sequence identities, respectively [20]. Therefore 2019-nCoV is considered as a SARS related coronavirus (SARSr-CoV) by pairwise protein sequence analysis (Fig. 1 ) [20].\nFig. 1 The evolutionary position of 2019-nCoV. The phylogenetic tree was constructed based on the complete genomic sequences of 2019-nCoV and related CoVs by using the neighbor-joining (NJ) method with 1000 bootstrap. The novel 2019-nCoV detected strains were indicated in bold with solid squares. Abbreviations are as follows: SARSr coronavirus, SARS-related coronavirus. The accession numbers of CoVs were showed in the figure. Bootstrap values above 50 were shown."}