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PMC:7079563 / 14562-15530 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
417 537-546 Species denotes 2019-nCoV Tax:2697049
418 629-638 Species denotes 2019-nCoV Tax:2697049
419 651-655 Species denotes CoVs Tax:11118
420 729-738 Species denotes 2019-nCoV Tax:2697049
421 835-846 Species denotes coronavirus Tax:694448
422 848-872 Species denotes SARS-related coronavirus Tax:694009
423 899-903 Species denotes CoVs Tax:11118
437 0-9 Species denotes 2019-nCoV Tax:2697049
438 40-48 Species denotes SARS-CoV Tax:694009
439 75-78 Species denotes CoV Tax:11118
440 123-132 Species denotes 2019-nCoV Tax:2697049
441 166-175 Species denotes SARSr-CoV Tax:694009
442 180-188 Species denotes SARS-CoV Tax:694009
443 251-264 Species denotes coronaviruses Tax:11118
444 270-273 Species denotes CoV Tax:11118
445 381-390 Species denotes 2019-nCoV Tax:2697049
446 410-434 Species denotes SARS related coronavirus Tax:694009
447 436-445 Species denotes SARSr-CoV Tax:694009
448 79-85 CellLine denotes RaTG13 CVCL:AR51
449 274-280 CellLine denotes RaTG13 CVCL:AR51

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T23 320-330 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T24 459-466 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T63 40-48 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T64 180-188 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T65 241-245 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T66 410-414 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T67 848-852 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T84 71-74 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T85 237-240 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T86 266-269 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T87 285-288 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T88 408-409 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T10 289-291 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T11 320-330 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T12 459-466 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T108 0-91 Sentence denotes 2019-nCoV shares 79.5% nt identity with SARS-CoV and 96% identity with bat-CoV-RaTG13 [20].
T109 92-370 Sentence denotes The genetic characteristics of 2019-nCoV are significantly different from SARSr-CoV and SARS-CoV, which are closely related only to the specific bat SARS-like coronaviruses, bat-CoV-RaTG13 and bat-SL-CoVZC45, with 96% and 86.9% nucleotide sequence identities, respectively [20].
T110 371-500 Sentence denotes Therefore 2019-nCoV is considered as a SARS related coronavirus (SARSr-CoV) by pairwise protein sequence analysis (Fig. 1 ) [20].
T111 501-547 Sentence denotes Fig. 1 The evolutionary position of 2019-nCoV.
T112 548-718 Sentence denotes The phylogenetic tree was constructed based on the complete genomic sequences of 2019-nCoV and related CoVs by using the neighbor-joining (NJ) method with 1000 bootstrap.
T113 719-798 Sentence denotes The novel 2019-nCoV detected strains were indicated in bold with solid squares.
T114 799-873 Sentence denotes Abbreviations are as follows: SARSr coronavirus, SARS-related coronavirus.
T115 874-930 Sentence denotes The accession numbers of CoVs were showed in the figure.
T116 931-968 Sentence denotes Bootstrap values above 50 were shown.