> top > docs > PMC:7079563 > spans > 10844-13003 > annotations

PMC:7079563 / 10844-13003 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
299 26-45 Disease denotes 2019-nCoV infection MESH:C000657245
329 1049-1058 Gene denotes cytokines
330 115-123 Species denotes SARS-CoV Tax:694009
331 128-136 Species denotes MERS-CoV Tax:1335626
332 143-151 Species denotes patients Tax:9606
333 262-270 Species denotes patients Tax:9606
334 504-513 Species denotes 2019-nCoV Tax:2697049
335 514-522 Species denotes patients Tax:9606
336 597-605 Species denotes MERS-CoV Tax:1335626
337 609-617 Species denotes SARS-CoV Tax:694009
338 845-853 Species denotes patients Tax:9606
339 969-977 Species denotes SARS-CoV Tax:694009
340 982-990 Species denotes MERS-CoV Tax:1335626
341 71-90 Disease denotes 2019-nCoV infection MESH:C000657245
342 160-165 Disease denotes fever MESH:D005334
343 167-176 Disease denotes dry cough MESH:D003371
344 178-185 Disease denotes dyspnea MESH:D004417
345 276-295 Disease denotes 2019-nCoV infection MESH:C000657245
346 381-392 Disease denotes sore throat MESH:D010608
347 573-581 Disease denotes diarrhea MESH:D003967
348 634-653 Disease denotes 2019-nCoV infection MESH:C000657245
349 682-717 Disease denotes acute respiratory distress syndrome MESH:D012128
350 719-731 Disease denotes septic shock MESH:D012772
351 733-751 Disease denotes metabolic acidosis MESH:D000138
352 757-765 Disease denotes bleeding MESH:D006470
353 770-793 Disease denotes coagulation dysfunction MESH:D001778
354 830-844 Disease denotes critically ill MESH:D016638
355 879-884 Disease denotes fever MESH:D005334
356 940-945 Disease denotes fever MESH:D005334
357 992-1012 Disease denotes 2019-nCoV infections MESH:C000657245
365 1083-1092 Species denotes 2019-nCoV Tax:2697049
366 1120-1128 Species denotes SARS-CoV Tax:694009
367 1365-1373 Species denotes SARS-CoV Tax:694009
368 1753-1762 Species denotes 2019-nCoV Tax:2697049
369 1908-1917 Species denotes 2019-nCoV Tax:2697049
370 2095-2103 Species denotes patients Tax:9606
371 1851-1860 Disease denotes infection MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 227-232 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T3 386-392 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T4 443-466 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T5 534-544 Body_part denotes intestinal http://purl.org/sig/ont/fma/fma7199
T6 1049-1058 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T7 1421-1444 Body_part denotes upper respiratory tract http://purl.org/sig/ont/fma/fma45661

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 227-232 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T4 386-392 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T5 443-466 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T6 449-466 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T7 1421-1444 Body_part denotes upper respiratory tract http://purl.obolibrary.org/obo/UBERON_0001557
T8 1427-1444 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065

LitCovid_AGAC

Id Subject Object Predicate Lexical cue
p22323s16 1020-1058 MPA denotes production of high levels of cytokines

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T39 26-45 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T40 36-45 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T41 71-90 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T42 81-90 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T43 115-123 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T44 276-295 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T45 286-295 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T46 381-392 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T47 573-581 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T48 609-617 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T49 634-653 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T50 644-653 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T51 682-717 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T52 688-717 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T53 733-751 Disease denotes metabolic acidosis http://purl.obolibrary.org/obo/MONDO_0000440
T54 743-751 Disease denotes acidosis http://purl.obolibrary.org/obo/MONDO_0006022
T55 969-977 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T56 992-1012 Disease denotes 2019-nCoV infections http://purl.obolibrary.org/obo/MONDO_0100096
T57 1120-1128 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T58 1365-1373 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T59 1851-1860 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T58 227-232 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T59 415-420 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T60 443-466 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T61 534-544 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestinal
T62 534-544 http://www.ebi.ac.uk/efo/EFO_0000834 denotes intestinal
T63 1155-1162 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T64 1815-1816 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 2023-2032 http://www.ebi.ac.uk/efo/EFO_0000876 denotes extremely

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 770-781 http://purl.obolibrary.org/obo/GO_0050817 denotes coagulation
T3 1445-1455 http://purl.obolibrary.org/obo/GO_0046903 denotes secretions

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T83 0-45 Sentence denotes 2.2 Clinical symptoms of 2019-nCoV infection
T84 46-137 Sentence denotes The clinical symptoms of 2019-nCoV infection are similar to those of SARS-CoV and MERS-CoV.
T85 138-252 Sentence denotes Most patients present fever, dry cough, dyspnea, and bilateral ground-glass opacities on chest CT scans [4,17,18].
T86 253-474 Sentence denotes However, patients with 2019-nCoV infection rarely have obvious upper respiratory signs and symptoms (such as snot, sneezing, or sore throat), indicating that the virus primarily infects the lower respiratory tract [4,17].
T87 475-623 Sentence denotes In addition, about 20–25% of 2019-nCoV patients experience intestinal symptoms and signs (such as diarrhea), similarly to MERS-CoV or SARS-CoV [17].
T88 624-794 Sentence denotes In severe 2019-nCoV infection cases, the symptoms include acute respiratory distress syndrome, septic shock, metabolic acidosis, and bleeding and coagulation dysfunction.
T89 795-950 Sentence denotes It is worth noting that severe and critically ill patients may have moderate to low fever during the course of the disease, even without obvious fever [3].
T90 951-1066 Sentence denotes Furthermore, like SARS-CoV and MERS-CoV, 2019-nCoV infections induce production of high levels of cytokines [2,17].
T91 1067-1129 Sentence denotes The epidemic of 2019-nCoV bears some similarities to SARS-CoV.
T92 1130-1355 Sentence denotes The outbreaks of the two viruses occurred at about the same time during the year, and they were quite stable in the environment, especially in air-conditioned space, owing to lower ambient temperature and lower humidity [19].
T93 1356-1561 Sentence denotes However, SARS-CoV had an aberrant trait that the “viral load” in upper respiratory tract secretions was low in the first 5 days of illness, then increased progressively and peaked early in the second week.
T94 1562-1731 Sentence denotes Consequently, the transmission rate was relatively low in the first days of illness, providing an opportunity for case detection and isolation to interrupt transmission.
T95 1732-1895 Sentence denotes On the contrary, for 2019-nCoV, the incubation lasts for an average of 10 days (in a reported range of 2–14 days) from infection to symptoms surfacing [2,4,17,20].
T96 1896-2159 Sentence denotes Even worse, 2019-nCoV is able to spread from one person to another even before any actual clinical manifestations, leading to “extremely challenging” conditions for detecting and isolating potential patients, which makes it more difficult to control the epidemic.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T16 160-165 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T17 167-176 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T18 178-185 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T19 381-392 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T20 573-581 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T21 688-708 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T22 726-731 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273
T23 733-751 Phenotype denotes metabolic acidosis http://purl.obolibrary.org/obo/HP_0001942
T24 879-884 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T25 940-945 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945

2_test

Id Subject Object Predicate Lexical cue
32087334-31986261-69694998 243-244 31986261 denotes 4
32087334-31986264-69694999 245-247 31986264 denotes 17
32087334-32007143-69695000 248-250 32007143 denotes 18
32087334-31986261-69695001 468-469 31986261 denotes 4
32087334-31986264-69695002 470-472 31986264 denotes 17
32087334-31986264-69695003 619-621 31986264 denotes 17
32087334-31978945-69695004 1060-1061 31978945 denotes 2
32087334-31986264-69695005 1062-1064 31986264 denotes 17
32087334-31978945-69695006 1884-1885 31978945 denotes 2
32087334-31986261-69695007 1886-1887 31986261 denotes 4
32087334-31986264-69695008 1888-1890 31986264 denotes 17