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PMC:7077191 / 2658-3794 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
97 26-29 Gene denotes 2.1 Gene:6700
104 81-91 Species denotes SARS-CoV-2 Tax:2697049
105 111-133 Species denotes 2019 Novel Coronavirus Tax:2697049
106 364-368 Species denotes CoVs Tax:11118
107 370-378 Species denotes SARS-CoV Tax:694009
108 383-391 Species denotes MERS-CoV Tax:1335626
109 467-477 Species denotes SARS-CoV-2 Tax:2697049
113 575-585 Species denotes SARS-CoV-2 Tax:2697049
114 614-622 Species denotes SARS-CoV Tax:694009
115 701-711 Species denotes SARS-CoV-2 Tax:2697049
119 844-854 Species denotes SARS-CoV-2 Tax:2697049
120 859-867 Species denotes SARS-CoV Tax:694009
121 1004-1008 Species denotes CoVs Tax:11118

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T8 322-325 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T9 536-546 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T10 563-571 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T11 634-641 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T12 678-686 Body_part denotes Proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T45 81-89 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T46 81-85 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T47 288-297 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T48 370-378 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T49 370-374 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T50 467-475 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T51 467-471 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T52 575-583 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T53 575-579 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T54 614-622 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T55 614-618 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T56 692-696 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T57 701-709 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T58 701-705 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T59 844-852 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T60 844-848 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T61 859-867 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T62 859-863 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T41 504-506 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T42 1132-1134 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T4 322-325 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T5 536-546 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T6 536-541 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T7 542-546 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T8 563-571 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T9 634-641 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T22 0-2 Sentence denotes 2.
T23 3-24 Sentence denotes Materials and Methods
T24 26-30 Sentence denotes 2.1.
T25 31-46 Sentence denotes Data Collection
T26 47-317 Sentence denotes The complete genomic sequences of SARS-CoV-2 were obtained from 2019 Novel Coronavirus Resource (2019nCoVR) [12] and two databases, including the National Center for Biotechnology Information (NCBI) [13] and Global Initiative on Sharing All Influenza Data (GISAID) [14].
T27 318-432 Sentence denotes The DNA sequences of two other representative CoVs (SARS-CoV and MERS-CoV) were included for comparative analysis.
T28 433-507 Sentence denotes The genomic information of latest SARS-CoV-2 strains is shown in Table S1.
T29 509-513 Sentence denotes 2.2.
T30 514-531 Sentence denotes Homology Analysis
T31 532-677 Sentence denotes The amino acid sequences of 28 proteins in SARS-CoV-2 were compared with those of SARS-CoV to analyze protein homology by using NCBI Blastp [15].
T32 678-783 Sentence denotes Proteins from SARS and SARS-CoV-2 were treated as homologous: identity value ≥ 65%, query coverage ≥ 95%.
T33 785-789 Sentence denotes 2.3.
T34 790-811 Sentence denotes Phylogenetic Analysis
T35 812-926 Sentence denotes Comparative genomic analyses of SARS-CoV-2 and SARS-CoV were performed by zpicture for the global comparison [16].
T36 927-1041 Sentence denotes Multiple sequence alignment and the construction of phylogenetic trees of 38 CoVs were conducted using MEGA7 [17].
T37 1042-1136 Sentence denotes The evolutionary distances were calculated using the Maximum Composite Likelihood method [18].

2_test

Id Subject Object Predicate Lexical cue
32098422-27004904-144406950 1037-1039 27004904 denotes 17
32098422-15258291-144406951 1132-1134 15258291 denotes 18