PMC:7077191 / 2658-3794
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
97 | 26-29 | Gene | denotes | 2.1 | Gene:6700 |
104 | 81-91 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
105 | 111-133 | Species | denotes | 2019 Novel Coronavirus | Tax:2697049 |
106 | 364-368 | Species | denotes | CoVs | Tax:11118 |
107 | 370-378 | Species | denotes | SARS-CoV | Tax:694009 |
108 | 383-391 | Species | denotes | MERS-CoV | Tax:1335626 |
109 | 467-477 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
113 | 575-585 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
114 | 614-622 | Species | denotes | SARS-CoV | Tax:694009 |
115 | 701-711 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
119 | 844-854 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
120 | 859-867 | Species | denotes | SARS-CoV | Tax:694009 |
121 | 1004-1008 | Species | denotes | CoVs | Tax:11118 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T8 | 322-325 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
T9 | 536-546 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
T10 | 563-571 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
T11 | 634-641 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T12 | 678-686 | Body_part | denotes | Proteins | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T45 | 81-89 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T46 | 81-85 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T47 | 288-297 | Disease | denotes | Influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
T48 | 370-378 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T49 | 370-374 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T50 | 467-475 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T51 | 467-471 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T52 | 575-583 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T53 | 575-579 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T54 | 614-622 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T55 | 614-618 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T56 | 692-696 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T57 | 701-709 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T58 | 701-705 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T59 | 844-852 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T60 | 844-848 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T61 | 859-867 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T62 | 859-863 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T41 | 504-506 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T42 | 1132-1134 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T4 | 322-325 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
T5 | 536-546 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
T6 | 536-541 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
T7 | 542-546 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
T8 | 563-571 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
T9 | 634-641 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T22 | 0-2 | Sentence | denotes | 2. |
T23 | 3-24 | Sentence | denotes | Materials and Methods |
T24 | 26-30 | Sentence | denotes | 2.1. |
T25 | 31-46 | Sentence | denotes | Data Collection |
T26 | 47-317 | Sentence | denotes | The complete genomic sequences of SARS-CoV-2 were obtained from 2019 Novel Coronavirus Resource (2019nCoVR) [12] and two databases, including the National Center for Biotechnology Information (NCBI) [13] and Global Initiative on Sharing All Influenza Data (GISAID) [14]. |
T27 | 318-432 | Sentence | denotes | The DNA sequences of two other representative CoVs (SARS-CoV and MERS-CoV) were included for comparative analysis. |
T28 | 433-507 | Sentence | denotes | The genomic information of latest SARS-CoV-2 strains is shown in Table S1. |
T29 | 509-513 | Sentence | denotes | 2.2. |
T30 | 514-531 | Sentence | denotes | Homology Analysis |
T31 | 532-677 | Sentence | denotes | The amino acid sequences of 28 proteins in SARS-CoV-2 were compared with those of SARS-CoV to analyze protein homology by using NCBI Blastp [15]. |
T32 | 678-783 | Sentence | denotes | Proteins from SARS and SARS-CoV-2 were treated as homologous: identity value ≥ 65%, query coverage ≥ 95%. |
T33 | 785-789 | Sentence | denotes | 2.3. |
T34 | 790-811 | Sentence | denotes | Phylogenetic Analysis |
T35 | 812-926 | Sentence | denotes | Comparative genomic analyses of SARS-CoV-2 and SARS-CoV were performed by zpicture for the global comparison [16]. |
T36 | 927-1041 | Sentence | denotes | Multiple sequence alignment and the construction of phylogenetic trees of 38 CoVs were conducted using MEGA7 [17]. |
T37 | 1042-1136 | Sentence | denotes | The evolutionary distances were calculated using the Maximum Composite Likelihood method [18]. |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32098422-27004904-144406950 | 1037-1039 | 27004904 | denotes | 17 |
32098422-15258291-144406951 | 1132-1134 | 15258291 | denotes | 18 |