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PMC:7074424 / 3161-4291 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
103 1071-1091 Gene denotes nucleocapsid protein Gene:918763
104 42-45 Species denotes CoV Tax:11118
105 190-194 Species denotes CoVs Tax:11118
106 268-271 Species denotes CoV Tax:11118
107 1005-1008 Species denotes CoV Tax:11118
108 1050-1053 Species denotes CoV Tax:11118
109 618-621 Chemical denotes PPs

2_test

Id Subject Object Predicate Lexical cue
32201449-25039866-47216990 247-248 25039866 denotes 3
32201449-25105276-47216991 527-528 25105276 denotes 9
32201449-25105276-47216992 914-915 25105276 denotes 9
32201449-27578435-47216993 1028-1030 27578435 denotes 10
32201449-17825937-47216994 1127-1129 17825937 denotes 11
T18720 247-248 25039866 denotes 3
T70064 527-528 25105276 denotes 9
T91638 914-915 25105276 denotes 9
T90677 1028-1030 27578435 denotes 10
T77104 1127-1129 17825937 denotes 11

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T94 80-88 GO:0016020 denotes membrane
T93 131-143 GO:0000786 denotes nucleocapsid
T92 169-176 NCBITaxon:10239 denotes viruses
T91 233-245 CHEBI:17089;BV_11;CHEBI:17089 denotes glycoprotein
T90 258-264 SO:0001026 denotes genome
T89 282-287 SO:0000704 denotes genes
T88 405-411 SO:0001026 denotes genome
T87 462-467 NCBITaxon:10239 denotes viral
T86 468-477 GO:0006260 denotes replicase
T85 510-514 PG_16;PR:000003209 denotes PP1a
T84 519-524 PG_15;PR:000001623 denotes PP1ab
T83 657-662 NCBITaxon:10239 denotes viral
T82 687-699 GO:0065003 denotes formation of
T81 728-735 GO:1990391 denotes complex
T80 751-757 SO:0001026 denotes genome
T79 770-775 NCBITaxon:10239 denotes virus
T78 846-854 GO:0031975 denotes envelope
T77 856-864 GO:0016020 denotes membrane
T76 971-980 GO:0010467 denotes expressed
T75 1040-1046 SO:0001026 denotes genome
T74 1071-1091 PG_4 denotes nucleocapsid protein
T73 1117-1125 GO:0031975 denotes envelope

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T18 30-38 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T19 60-67 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T20 93-100 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T21 114-121 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T22 148-155 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T23 233-245 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T24 254-257 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T25 258-264 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T26 401-404 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T27 405-411 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T28 478-486 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T29 559-567 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T30 751-757 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T31 788-792 Body_part denotes mRNA http://purl.org/sig/ont/fma/fma67122
T32 823-831 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T33 904-912 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T34 954-961 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T35 1019-1026 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T36 1036-1039 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T37 1040-1046 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T38 1084-1091 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T22 80-88 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T23 169-176 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T24 272-275 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T25 282-287 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T26 436-437 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T27 770-775 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T28 856-864 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T29 1127-1129 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T17 30-38 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T18 60-67 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T19 93-100 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T20 114-121 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T21 148-155 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T22 185-189 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T23 233-245 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T24 478-486 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T25 559-567 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T26 823-831 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T27 904-912 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T28 954-961 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T29 1019-1026 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T30 1084-1091 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T3 687-696 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T4 714-727 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T5 714-727 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T14 0-156 Sentence denotes The most important structural proteins of CoV are spike (S) protein (trimeric), membrane (M) protein, envelop (E) protein, and the nucleocapsid (N) protein.
T15 157-374 Sentence denotes Some of the viruses such as beta-CoVs also have hemagglutinin esterase (HE) glycoprotein.[3] The RNA genome of CoV has seven genes that are conserved in the order: ORF1a, ORF1b, S, OEF3, E, M, N in 5' to 3' direction.
T16 375-622 Sentence denotes The two-third part of the RNA genome is covered by the ORF1a/b, which produces the two viral replicase proteins that are polyproteins (PP1a and PP1ab).[9] Sixteen mature nonstructural proteins (NSPs) arise from further processing of these two PPs.
T17 623-736 Sentence denotes These NSPs take part in different viral functions including the formation of the replicase transcriptase complex.
T18 737-1130 Sentence denotes The remaining genome part of the virus encodes the mRNA which produces the structural proteins, i.e., spike, envelope, membrane, and nucleocapsid, and other accessory proteins.[9] Another important envelop-associated protein which is expressed by only some strains of CoV is the HE protein.[10] The RNA genome of CoV is packed in the nucleocapsid protein and further covered with envelope.[11]