PMC:7073332 / 9328-10184
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
205 | 32-45 | Species | denotes | coronaviruses | Tax:11118 |
214 | 655-660 | Gene | denotes | spike | Gene:43740568 |
215 | 70-81 | Species | denotes | coronavirus | Tax:11118 |
216 | 83-86 | Species | denotes | CoV | Tax:11118 |
217 | 173-186 | Species | denotes | coronaviruses | Tax:11118 |
218 | 229-251 | Species | denotes | coronavirus, 2019-nCoV | Tax:2697049 |
219 | 252-262 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
220 | 620-628 | Species | denotes | SARS-CoV | Tax:694009 |
221 | 424-428 | Species | denotes | HCoV | Tax:694448 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T35 | 159-166 | Body_part | denotes | genomes | http://purl.org/sig/ont/fma/fma84116 |
T36 | 429-436 | Body_part | denotes | genomes | http://purl.org/sig/ont/fma/fma84116 |
T37 | 756-762 | Body_part | denotes | Genome | http://purl.org/sig/ont/fma/fma84116 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T3 | 327-332 | Body_part | denotes | scale | http://purl.obolibrary.org/obo/UBERON_0002542 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T38 | 252-260 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T39 | 620-628 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T63 | 47-48 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T64 | 403-404 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
T65 | 472-479 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
T66 | 484-491 | http://purl.obolibrary.org/obo/CLO_0007225 | denotes | labeled |
T67 | 846-848 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T68 | 853-855 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
T69 | 853-855 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T92 | 640-642 | Chemical | denotes | ID | http://purl.obolibrary.org/obo/CHEBI_141439 |
T93 | 666-668 | Chemical | denotes | ID | http://purl.obolibrary.org/obo/CHEBI_141439 |
T94 | 703-705 | Chemical | denotes | ID | http://purl.obolibrary.org/obo/CHEBI_141439 |
T95 | 853-855 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T48 | 0-46 | Sentence | denotes | Fig. 2 Phylogenetic analysis of coronaviruses. |
T49 | 47-88 | Sentence | denotes | a Phylogenetic tree of coronavirus (CoV). |
T50 | 89-187 | Sentence | denotes | Phylogenetic algorithm analyzed evolutionary conservation among whole genomes of 15 coronaviruses. |
T51 | 188-263 | Sentence | denotes | Red color highlights the recent emergent coronavirus, 2019-nCoV/SARS-CoV-2. |
T52 | 264-322 | Sentence | denotes | Numbers on the branches indicate bootstrap support values. |
T53 | 323-437 | Sentence | denotes | The scale shows the evolutionary distance computed using the p-distance method. b Schematic plot for HCoV genomes. |
T54 | 438-524 | Sentence | denotes | The genus and host information of viruses was labeled on the left by different colors. |
T55 | 525-643 | Sentence | denotes | Empty dark gray boxes represent accessory open reading frames (ORFs). c–e The 3D structures of SARS-CoV nsp12 (PDB ID: |
T56 | 644-669 | Sentence | denotes | 6NUR) (c), spike (PDB ID: |
T57 | 670-706 | Sentence | denotes | 6ACK) (d), and nucleocapsid (PDB ID: |
T58 | 707-755 | Sentence | denotes | 2CJR) (e) shown were based on homology modeling. |
T59 | 756-856 | Sentence | denotes | Genome information and phylogenetic analysis results are provided in Supplementary Tables S1 and S2. |