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PMC:7073332 / 9328-10184 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
205 32-45 Species denotes coronaviruses Tax:11118
214 655-660 Gene denotes spike Gene:43740568
215 70-81 Species denotes coronavirus Tax:11118
216 83-86 Species denotes CoV Tax:11118
217 173-186 Species denotes coronaviruses Tax:11118
218 229-251 Species denotes coronavirus, 2019-nCoV Tax:2697049
219 252-262 Species denotes SARS-CoV-2 Tax:2697049
220 620-628 Species denotes SARS-CoV Tax:694009
221 424-428 Species denotes HCoV Tax:694448

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T35 159-166 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T36 429-436 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T37 756-762 Body_part denotes Genome http://purl.org/sig/ont/fma/fma84116

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 327-332 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T38 252-260 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T39 620-628 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T63 47-48 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T64 403-404 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T65 472-479 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T66 484-491 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeled
T67 846-848 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T68 853-855 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T69 853-855 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T92 640-642 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T93 666-668 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T94 703-705 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T95 853-855 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T48 0-46 Sentence denotes Fig. 2 Phylogenetic analysis of coronaviruses.
T49 47-88 Sentence denotes a Phylogenetic tree of coronavirus (CoV).
T50 89-187 Sentence denotes Phylogenetic algorithm analyzed evolutionary conservation among whole genomes of 15 coronaviruses.
T51 188-263 Sentence denotes Red color highlights the recent emergent coronavirus, 2019-nCoV/SARS-CoV-2.
T52 264-322 Sentence denotes Numbers on the branches indicate bootstrap support values.
T53 323-437 Sentence denotes The scale shows the evolutionary distance computed using the p-distance method. b Schematic plot for HCoV genomes.
T54 438-524 Sentence denotes The genus and host information of viruses was labeled on the left by different colors.
T55 525-643 Sentence denotes Empty dark gray boxes represent accessory open reading frames (ORFs). c–e The 3D structures of SARS-CoV nsp12 (PDB ID:
T56 644-669 Sentence denotes 6NUR) (c), spike (PDB ID:
T57 670-706 Sentence denotes 6ACK) (d), and nucleocapsid (PDB ID:
T58 707-755 Sentence denotes 2CJR) (e) shown were based on homology modeling.
T59 756-856 Sentence denotes Genome information and phylogenetic analysis results are provided in Supplementary Tables S1 and S2.