PMC:7073332 / 7170-8507 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7073332","sourcedb":"PMC","sourceid":"7073332","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7073332","text":"Overall workflow of this study.\nOur network-based methodology combines a systems pharmacology-based network medicine platform that quantifies the interplay between the virus–host interactome and drug targets in the human PPI network. a Human coronavirus (HCoV)-associated host proteins were collected from literatures and pooled to generate a pan-HCoV protein subnetwork. b Network proximity between drug targets and HCoV-associated proteins was calculated to screen for candidate repurposable drugs for HCoVs under the human protein interactome model. c, d Gene set enrichment analysis was utilized to validate the network-based prediction. e Top candidates were further prioritized for drug combinations using network-based method captured by the “Complementary Exposure” pattern: the targets of the drugs both hit the HCoV–host subnetwork, but target separate neighborhoods in the human interactome network. f Overall hypothesis of the network-based methodology: (i) the proteins that functionally associate with HCoVs are localized in the corresponding subnetwork within the comprehensive human interactome network; and (ii) proteins that serve as drug targets for a specific disease may also be suitable drug targets for potential antiviral infection owing to common protein–protein interactions elucidated by the human interactome.","divisions":[{"label":"title","span":{"begin":0,"end":31}}],"tracks":[{"project":"LitCovid-PubTator","denotations":[{"id":"173","span":{"begin":215,"end":220},"obj":"Species"},{"id":"174","span":{"begin":236,"end":253},"obj":"Species"},{"id":"175","span":{"begin":520,"end":525},"obj":"Species"},{"id":"176","span":{"begin":884,"end":889},"obj":"Species"},{"id":"177","span":{"begin":1093,"end":1098},"obj":"Species"},{"id":"178","span":{"begin":1319,"end":1324},"obj":"Species"},{"id":"179","span":{"begin":255,"end":259},"obj":"Species"},{"id":"180","span":{"begin":347,"end":351},"obj":"Species"},{"id":"181","span":{"begin":417,"end":421},"obj":"Species"},{"id":"182","span":{"begin":821,"end":825},"obj":"Species"},{"id":"183","span":{"begin":1246,"end":1255},"obj":"Disease"}],"attributes":[{"id":"A173","pred":"tao:has_database_id","subj":"173","obj":"Tax:9606"},{"id":"A174","pred":"tao:has_database_id","subj":"174","obj":"Tax:694448"},{"id":"A175","pred":"tao:has_database_id","subj":"175","obj":"Tax:9606"},{"id":"A176","pred":"tao:has_database_id","subj":"176","obj":"Tax:9606"},{"id":"A177","pred":"tao:has_database_id","subj":"177","obj":"Tax:9606"},{"id":"A178","pred":"tao:has_database_id","subj":"178","obj":"Tax:9606"},{"id":"A179","pred":"tao:has_database_id","subj":"179","obj":"Tax:694448"},{"id":"A180","pred":"tao:has_database_id","subj":"180","obj":"Tax:694448"},{"id":"A181","pred":"tao:has_database_id","subj":"181","obj":"Tax:694448"},{"id":"A182","pred":"tao:has_database_id","subj":"182","obj":"Tax:694448"},{"id":"A183","pred":"tao:has_database_id","subj":"183","obj":"MESH:D007239"},{"subj":"173","pred":"source","obj":"LitCovid-PubTator"},{"subj":"174","pred":"source","obj":"LitCovid-PubTator"},{"subj":"175","pred":"source","obj":"LitCovid-PubTator"},{"subj":"176","pred":"source","obj":"LitCovid-PubTator"},{"subj":"177","pred":"source","obj":"LitCovid-PubTator"},{"subj":"178","pred":"source","obj":"LitCovid-PubTator"},{"subj":"179","pred":"source","obj":"LitCovid-PubTator"},{"subj":"180","pred":"source","obj":"LitCovid-PubTator"},{"subj":"181","pred":"source","obj":"LitCovid-PubTator"},{"subj":"182","pred":"source","obj":"LitCovid-PubTator"},{"subj":"183","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T22","span":{"begin":277,"end":285},"obj":"Body_part"},{"id":"T23","span":{"begin":352,"end":359},"obj":"Body_part"},{"id":"T24","span":{"begin":433,"end":441},"obj":"Body_part"},{"id":"T25","span":{"begin":526,"end":533},"obj":"Body_part"},{"id":"T26","span":{"begin":558,"end":562},"obj":"Body_part"},{"id":"T27","span":{"begin":974,"end":982},"obj":"Body_part"},{"id":"T28","span":{"begin":1129,"end":1137},"obj":"Body_part"},{"id":"T29","span":{"begin":1272,"end":1279},"obj":"Body_part"},{"id":"T30","span":{"begin":1280,"end":1287},"obj":"Body_part"}],"attributes":[{"id":"A22","pred":"fma_id","subj":"T22","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A23","pred":"fma_id","subj":"T23","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A24","pred":"fma_id","subj":"T24","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A25","pred":"fma_id","subj":"T25","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A26","pred":"fma_id","subj":"T26","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A27","pred":"fma_id","subj":"T27","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A28","pred":"fma_id","subj":"T28","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A29","pred":"fma_id","subj":"T29","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A30","pred":"fma_id","subj":"T30","obj":"http://purl.org/sig/ont/fma/fma67257"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T25","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T26","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T27","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T28","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T29","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T30","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T28","span":{"begin":1246,"end":1255},"obj":"Disease"}],"attributes":[{"id":"A28","pred":"mondo_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"subj":"T28","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T45","span":{"begin":71,"end":72},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T46","span":{"begin":168,"end":173},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T47","span":{"begin":215,"end":220},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T48","span":{"begin":234,"end":235},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T49","span":{"begin":236,"end":241},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T50","span":{"begin":341,"end":342},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T51","span":{"begin":343,"end":346},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9596"},{"id":"T52","span":{"begin":372,"end":373},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T53","span":{"begin":520,"end":533},"obj":"http://purl.obolibrary.org/obo/PR_000029067"},{"id":"T54","span":{"begin":558,"end":562},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T55","span":{"begin":884,"end":889},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T56","span":{"begin":1093,"end":1098},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T57","span":{"begin":1169,"end":1170},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T58","span":{"begin":1319,"end":1324},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"}],"attributes":[{"subj":"T45","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T46","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T47","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T48","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T49","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T50","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T51","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T52","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T53","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T54","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T55","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T56","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T57","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T58","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T71","span":{"begin":108,"end":116},"obj":"Chemical"},{"id":"T72","span":{"begin":195,"end":199},"obj":"Chemical"},{"id":"T73","span":{"begin":221,"end":224},"obj":"Chemical"},{"id":"T75","span":{"begin":277,"end":285},"obj":"Chemical"},{"id":"T76","span":{"begin":352,"end":359},"obj":"Chemical"},{"id":"T77","span":{"begin":400,"end":404},"obj":"Chemical"},{"id":"T78","span":{"begin":433,"end":441},"obj":"Chemical"},{"id":"T79","span":{"begin":494,"end":499},"obj":"Chemical"},{"id":"T80","span":{"begin":526,"end":533},"obj":"Chemical"},{"id":"T81","span":{"begin":688,"end":692},"obj":"Chemical"},{"id":"T82","span":{"begin":802,"end":807},"obj":"Chemical"},{"id":"T83","span":{"begin":974,"end":982},"obj":"Chemical"},{"id":"T84","span":{"begin":1129,"end":1137},"obj":"Chemical"},{"id":"T85","span":{"begin":1152,"end":1156},"obj":"Chemical"},{"id":"T86","span":{"begin":1209,"end":1213},"obj":"Chemical"},{"id":"T87","span":{"begin":1236,"end":1245},"obj":"Chemical"},{"id":"T88","span":{"begin":1272,"end":1279},"obj":"Chemical"},{"id":"T89","span":{"begin":1280,"end":1287},"obj":"Chemical"}],"attributes":[{"id":"A71","pred":"chebi_id","subj":"T71","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A72","pred":"chebi_id","subj":"T72","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A73","pred":"chebi_id","subj":"T73","obj":"http://purl.obolibrary.org/obo/CHEBI_53266"},{"id":"A74","pred":"chebi_id","subj":"T73","obj":"http://purl.obolibrary.org/obo/CHEBI_60614"},{"id":"A75","pred":"chebi_id","subj":"T75","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A76","pred":"chebi_id","subj":"T76","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A77","pred":"chebi_id","subj":"T77","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A78","pred":"chebi_id","subj":"T78","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A79","pred":"chebi_id","subj":"T79","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A80","pred":"chebi_id","subj":"T80","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A81","pred":"chebi_id","subj":"T81","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A82","pred":"chebi_id","subj":"T82","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A83","pred":"chebi_id","subj":"T83","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A84","pred":"chebi_id","subj":"T84","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A85","pred":"chebi_id","subj":"T85","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A86","pred":"chebi_id","subj":"T86","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A87","pred":"chebi_id","subj":"T87","obj":"http://purl.obolibrary.org/obo/CHEBI_22587"},{"id":"A88","pred":"chebi_id","subj":"T88","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A89","pred":"chebi_id","subj":"T89","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"subj":"T71","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T72","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T73","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T75","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T76","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T77","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T78","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T79","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T80","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T81","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T82","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T83","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T84","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T85","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T86","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T87","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T88","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T89","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T41","span":{"begin":32,"end":1337},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T41","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PubTator","color":"#ab93ec","default":true},{"id":"LitCovid-PD-FMA-UBERON","color":"#94ec93"},{"id":"LitCovid-PD-MONDO","color":"#ec93ae"},{"id":"LitCovid-PD-CLO","color":"#93c8ec"},{"id":"LitCovid-PD-CHEBI","color":"#e2ec93"},{"id":"LitCovid-sentences","color":"#dc93ec"}]}]}}