PMC:7073332 / 19836-20855
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
474 | 767-784 | Gene | denotes | estrogen receptor | Gene:2099 |
475 | 292-297 | Species | denotes | human | Tax:9606 |
476 | 182-186 | Species | denotes | HCoV | Tax:694448 |
477 | 259-263 | Species | denotes | HCoV | Tax:694448 |
478 | 356-360 | Species | denotes | HCoV | Tax:694448 |
479 | 537-541 | Chemical | denotes | GSEA | |
480 | 715-725 | Chemical | denotes | toremifene | MESH:D017312 |
481 | 799-809 | Chemical | denotes | irbesartan | MESH:D000077405 |
482 | 847-861 | Chemical | denotes | mercaptopurine | MESH:D015122 |
483 | 944-953 | Chemical | denotes | melatonin | MESH:D008550 |
484 | 966-971 | Chemical | denotes | amine | MESH:D000588 |
485 | 995-1017 | Disease | denotes | rhythm sleep disorders | MESH:D012893 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T99 | 33-37 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
T100 | 198-206 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
T101 | 275-283 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
T102 | 298-305 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T103 | 306-313 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T104 | 372-379 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T105 | 417-425 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
T106 | 492-500 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
T107 | 767-775 | Body_part | denotes | estrogen | http://purl.org/sig/ont/fma/fma83376 |
T108 | 944-953 | Body_part | denotes | melatonin | http://purl.org/sig/ont/fma/fma74644 |
T109 | 957-971 | Body_part | denotes | biogenic amine | http://purl.org/sig/ont/fma/fma67161 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T71 | 985-1017 | Disease | denotes | circadian rhythm sleep disorders | http://purl.obolibrary.org/obo/MONDO_0024361 |
T72 | 1002-1017 | Disease | denotes | sleep disorders | http://purl.obolibrary.org/obo/MONDO_0003406 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T138 | 0-1 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T139 | 33-37 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
T140 | 292-305 | http://purl.obolibrary.org/obo/PR_000029067 | denotes | human protein |
T141 | 646-647 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
T142 | 713-714 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
T143 | 767-784 | http://purl.obolibrary.org/obo/PR_000007204 | denotes | estrogen receptor |
T144 | 955-956 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T198 | 106-111 | Chemical | denotes | drugs | http://purl.obolibrary.org/obo/CHEBI_23888 |
T199 | 159-163 | Chemical | denotes | drug | http://purl.obolibrary.org/obo/CHEBI_23888 |
T200 | 198-206 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
T201 | 235-240 | Chemical | denotes | drugs | http://purl.obolibrary.org/obo/CHEBI_23888 |
T202 | 275-283 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
T203 | 298-305 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T204 | 306-313 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T205 | 344-348 | Chemical | denotes | drug | http://purl.obolibrary.org/obo/CHEBI_23888 |
T206 | 372-379 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T207 | 417-425 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
T208 | 492-500 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
T209 | 559-564 | Chemical | denotes | drugs | http://purl.obolibrary.org/obo/CHEBI_23888 |
T210 | 585-587 | Chemical | denotes | NA | http://purl.obolibrary.org/obo/CHEBI_33696 |
T211 | 639-644 | Chemical | denotes | drugs | http://purl.obolibrary.org/obo/CHEBI_23888 |
T212 | 706-711 | Chemical | denotes | drugs | http://purl.obolibrary.org/obo/CHEBI_23888 |
T213 | 715-725 | Chemical | denotes | toremifene | http://purl.obolibrary.org/obo/CHEBI_9635 |
T214 | 767-794 | Chemical | denotes | estrogen receptor modulator | http://purl.obolibrary.org/obo/CHEBI_50739 |
T215 | 767-775 | Chemical | denotes | estrogen | http://purl.obolibrary.org/obo/CHEBI_50114 |
T216 | 776-794 | Chemical | denotes | receptor modulator | http://purl.obolibrary.org/obo/CHEBI_90710 |
T217 | 799-809 | Chemical | denotes | irbesartan | http://purl.obolibrary.org/obo/CHEBI_5959 |
T218 | 814-825 | Chemical | denotes | angiotensin | http://purl.obolibrary.org/obo/CHEBI_48433 |
T219 | 847-861 | Chemical | denotes | mercaptopurine | http://purl.obolibrary.org/obo/CHEBI_50667 |
T220 | 866-880 | Chemical | denotes | antimetabolite | http://purl.obolibrary.org/obo/CHEBI_35221 |
T221 | 881-901 | Chemical | denotes | antineoplastic agent | http://purl.obolibrary.org/obo/CHEBI_35610 |
T222 | 907-924 | Chemical | denotes | immunosuppressant | http://purl.obolibrary.org/obo/CHEBI_35705 |
T223 | 944-953 | Chemical | denotes | melatonin | http://purl.obolibrary.org/obo/CHEBI_16796 |
T224 | 966-971 | Chemical | denotes | amine | http://purl.obolibrary.org/obo/CHEBI_32952 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T24 | 985-1001 | http://purl.obolibrary.org/obo/GO_0007623 | denotes | circadian rhythm |
T25 | 995-1001 | http://purl.obolibrary.org/obo/GO_0048511 | denotes | rhythm |
T26 | 1002-1007 | http://purl.obolibrary.org/obo/GO_0030431 | denotes | sleep |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T120 | 0-122 | Sentence | denotes | a Network-predicted evidence and gene set enrichment analysis (GSEA) scores for 16 potential repurposable drugs for HCoVs. |
T121 | 123-220 | Sentence | denotes | The overall connectivity of the top drug candidates to the HCoV-associated proteins was examined. |
T122 | 221-335 | Sentence | denotes | Most of these drugs indirectly target HCoV-associated proteins via the human protein–protein interaction networks. |
T123 | 336-467 | Sentence | denotes | All the drug–target-HCoV-associated protein connections were examined, and those proteins with at least five connections are shown. |
T124 | 468-536 | Sentence | denotes | The box heights for the proteins indicate the number of connections. |
T125 | 537-1019 | Sentence | denotes | GSEA scores for eight drugs were not available (NA) due to the lack of transcriptome profiles for the drugs. b–e Inferred mechanism-of-action networks for four selected drugs: b toremifene (first-generation nonsteroidal-selective estrogen receptor modulator), c irbesartan (an angiotensin receptor blocker), d mercaptopurine (an antimetabolite antineoplastic agent with immunosuppressant properties), and e melatonin (a biogenic amine for treating circadian rhythm sleep disorders). |