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PMC:7068984 / 14047-15565 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
486 577-581 Gene denotes ACE2 Gene:59272
487 237-247 Species denotes SARS-CoV-2 Tax:2697049
488 300-307 Species denotes patient Tax:9606
489 480-490 Species denotes SARS-CoV-2 Tax:2697049
490 970-976 Species denotes humans Tax:9606
491 1008-1014 Species denotes people Tax:9606
492 1059-1067 Species denotes patients Tax:9606
493 1102-1110 Species denotes patients Tax:9606
494 1158-1168 Species denotes SARS-CoV-2 Tax:2697049
495 1179-1187 Species denotes patients Tax:9606
496 1281-1289 Species denotes children Tax:9606
497 1364-1372 Species denotes patients Tax:9606
498 21-51 Disease denotes respiratory infectious disease MESH:D012141
499 53-61 Disease denotes COVID-19 MESH:C000657245
500 290-299 Disease denotes pneumonia MESH:D011014
501 738-747 Disease denotes infection MESH:D007239
502 885-893 Disease denotes COVID-19 MESH:C000657245
503 1170-1178 Disease denotes COVID-19 MESH:C000657245
504 1234-1239 Disease denotes fever MESH:D005334
505 1241-1248 Disease denotes malaise MESH:D005221
506 1254-1259 Disease denotes cough MESH:D003371
507 1295-1315 Disease denotes SARS-CoV-2 infection MESH:C000657245
508 1419-1454 Disease denotes acute respiratory distress syndrome MESH:D012128
509 1456-1475 Disease denotes respiratory failure MESH:D012131
510 1477-1499 Disease denotes multiple organ failure MESH:D009102
511 1506-1512 Disease denotes deaths MESH:D003643

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T79 92-109 Body_part denotes respiratory tract http://purl.org/sig/ont/fma/fma265130
T80 510-515 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T81 582-589 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T82 615-619 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T83 620-645 Body_part denotes alveolar epithelial cells http://purl.org/sig/ont/fma/fma62499
T84 640-645 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T85 650-661 Body_part denotes enterocytes http://purl.org/sig/ont/fma/fma62122
T86 665-680 Body_part denotes small intestine http://purl.org/sig/ont/fma/fma7200
T87 1486-1491 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T7 92-109 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T8 510-515 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T9 615-619 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T10 665-680 Body_part denotes small intestine http://purl.obolibrary.org/obo/UBERON_0002108
T11 671-680 Body_part denotes intestine http://purl.obolibrary.org/obo/UBERON_0000160
T12 1486-1491 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T104 33-51 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T105 53-61 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T106 237-245 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T107 290-299 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T108 480-488 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T109 738-747 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T110 885-893 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T111 1158-1166 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T112 1170-1178 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T113 1295-1303 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T114 1306-1315 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T115 1336-1339 Disease denotes flu http://purl.obolibrary.org/obo/MONDO_0005812
T116 1419-1454 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T117 1425-1454 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T118 1456-1475 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T119 1477-1499 Disease denotes multiple organ failure http://purl.obolibrary.org/obo/MONDO_0043726

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T124 168-170 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T125 176-177 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T126 217-220 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T127 235-236 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T128 281-282 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T129 333-334 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T130 510-515 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T131 510-515 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T132 615-619 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T133 615-619 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T134 629-639 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T135 640-645 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T136 665-680 http://purl.obolibrary.org/obo/UBERON_0002108 denotes small intestine
T137 849-853 http://purl.obolibrary.org/obo/CLO_0053001 denotes 1–14
T138 935-937 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T139 970-976 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T140 1116-1123 http://purl.obolibrary.org/obo/UBERON_0003100 denotes females
T141 1129-1131 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T142 1358-1359 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T143 1486-1491 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T144 1514-1516 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T50 582-589 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T20 136-146 http://purl.obolibrary.org/obo/GO_0046903 denotes secretions

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T97 0-202 Sentence denotes As an emerging acute respiratory infectious disease, COVID-19 primarily spreads through the respiratory tract, by droplets, respiratory secretions, and direct contact [41] for a low infective dose [42].
T98 203-424 Sentence denotes Otherwise, it has been reported a SARS-CoV-2 was isolated from fecal swabs of a severe pneumonia patient on 10 February 2020 from a critical case in the Fifth Affiliated Hospital, Sun Yat-Sen University, Guangdong, China.
T99 425-576 Sentence denotes Likewise, Zhang et al. [43] have found the presence of SARS-CoV-2 in fecal swabs and blood, indicating the possibility of multiple routes transmission.
T100 577-775 Sentence denotes ACE2 protein presents in abundance on lung alveolar epithelial cells and enterocytes of small intestine remarkably [44], which may help understand the routes of infection and disease manifestations.
T101 776-876 Sentence denotes Based on current epidemiological investigation, the incubation period is 1–14 days, mostly 3–7 days.
T102 877-939 Sentence denotes And the COVID-19 is contagious during the latency period [45].
T103 940-1040 Sentence denotes It is highly transmissible in humans, especially in the elderly and people with underlying diseases.
T104 1041-1137 Sentence denotes The median age of patients is 47–59 years, and 41.9–45.7% of patients were females [16, 41, 46].
T105 1138-1265 Sentence denotes As it is designated SARS-CoV-2, COVID-19 patients presented certainly similar symptoms, such as fever, malaise, and cough [47].
T106 1266-1518 Sentence denotes Most adults or children with SARS-CoV-2 infection presented with mild flu-like symptoms and a few patients are in critical condition and rapidly develop acute respiratory distress syndrome, respiratory failure, multiple organ failure, even deaths [48].

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T15 290-299 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T16 1234-1239 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T17 1241-1248 Phenotype denotes malaise http://purl.obolibrary.org/obo/HP_0012378
T18 1254-1259 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T19 1425-1445 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T20 1456-1475 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878

2_test

Id Subject Object Predicate Lexical cue
32169119-32065057-70132214 449-451 32065057 denotes 43
32169119-15141377-70132215 693-695 15141377 denotes 44
32169119-32029004-70132216 935-937 32029004 denotes 45
32169119-12671061-70132217 1261-1263 12671061 denotes 47
32169119-31986264-70132218 1514-1516 31986264 denotes 48