PMC:7068984 / 14047-15565
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
486 | 577-581 | Gene | denotes | ACE2 | Gene:59272 |
487 | 237-247 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
488 | 300-307 | Species | denotes | patient | Tax:9606 |
489 | 480-490 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
490 | 970-976 | Species | denotes | humans | Tax:9606 |
491 | 1008-1014 | Species | denotes | people | Tax:9606 |
492 | 1059-1067 | Species | denotes | patients | Tax:9606 |
493 | 1102-1110 | Species | denotes | patients | Tax:9606 |
494 | 1158-1168 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
495 | 1179-1187 | Species | denotes | patients | Tax:9606 |
496 | 1281-1289 | Species | denotes | children | Tax:9606 |
497 | 1364-1372 | Species | denotes | patients | Tax:9606 |
498 | 21-51 | Disease | denotes | respiratory infectious disease | MESH:D012141 |
499 | 53-61 | Disease | denotes | COVID-19 | MESH:C000657245 |
500 | 290-299 | Disease | denotes | pneumonia | MESH:D011014 |
501 | 738-747 | Disease | denotes | infection | MESH:D007239 |
502 | 885-893 | Disease | denotes | COVID-19 | MESH:C000657245 |
503 | 1170-1178 | Disease | denotes | COVID-19 | MESH:C000657245 |
504 | 1234-1239 | Disease | denotes | fever | MESH:D005334 |
505 | 1241-1248 | Disease | denotes | malaise | MESH:D005221 |
506 | 1254-1259 | Disease | denotes | cough | MESH:D003371 |
507 | 1295-1315 | Disease | denotes | SARS-CoV-2 infection | MESH:C000657245 |
508 | 1419-1454 | Disease | denotes | acute respiratory distress syndrome | MESH:D012128 |
509 | 1456-1475 | Disease | denotes | respiratory failure | MESH:D012131 |
510 | 1477-1499 | Disease | denotes | multiple organ failure | MESH:D009102 |
511 | 1506-1512 | Disease | denotes | deaths | MESH:D003643 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T79 | 92-109 | Body_part | denotes | respiratory tract | http://purl.org/sig/ont/fma/fma265130 |
T80 | 510-515 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
T81 | 582-589 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T82 | 615-619 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
T83 | 620-645 | Body_part | denotes | alveolar epithelial cells | http://purl.org/sig/ont/fma/fma62499 |
T84 | 640-645 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T85 | 650-661 | Body_part | denotes | enterocytes | http://purl.org/sig/ont/fma/fma62122 |
T86 | 665-680 | Body_part | denotes | small intestine | http://purl.org/sig/ont/fma/fma7200 |
T87 | 1486-1491 | Body_part | denotes | organ | http://purl.org/sig/ont/fma/fma67498 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T7 | 92-109 | Body_part | denotes | respiratory tract | http://purl.obolibrary.org/obo/UBERON_0000065 |
T8 | 510-515 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
T9 | 615-619 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
T10 | 665-680 | Body_part | denotes | small intestine | http://purl.obolibrary.org/obo/UBERON_0002108 |
T11 | 671-680 | Body_part | denotes | intestine | http://purl.obolibrary.org/obo/UBERON_0000160 |
T12 | 1486-1491 | Body_part | denotes | organ | http://purl.obolibrary.org/obo/UBERON_0000062 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T104 | 33-51 | Disease | denotes | infectious disease | http://purl.obolibrary.org/obo/MONDO_0005550 |
T105 | 53-61 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T106 | 237-245 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T107 | 290-299 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
T108 | 480-488 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T109 | 738-747 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T110 | 885-893 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T111 | 1158-1166 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T112 | 1170-1178 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T113 | 1295-1303 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T114 | 1306-1315 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T115 | 1336-1339 | Disease | denotes | flu | http://purl.obolibrary.org/obo/MONDO_0005812 |
T116 | 1419-1454 | Disease | denotes | acute respiratory distress syndrome | http://purl.obolibrary.org/obo/MONDO_0006502 |
T117 | 1425-1454 | Disease | denotes | respiratory distress syndrome | http://purl.obolibrary.org/obo/MONDO_0009971 |
T118 | 1456-1475 | Disease | denotes | respiratory failure | http://purl.obolibrary.org/obo/MONDO_0021113 |
T119 | 1477-1499 | Disease | denotes | multiple organ failure | http://purl.obolibrary.org/obo/MONDO_0043726 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T124 | 168-170 | http://purl.obolibrary.org/obo/CLO_0053794 | denotes | 41 |
T125 | 176-177 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T126 | 217-220 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T127 | 235-236 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T128 | 281-282 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T129 | 333-334 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T130 | 510-515 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
T131 | 510-515 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
T132 | 615-619 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
T133 | 615-619 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
T134 | 629-639 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
T135 | 640-645 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T136 | 665-680 | http://purl.obolibrary.org/obo/UBERON_0002108 | denotes | small intestine |
T137 | 849-853 | http://purl.obolibrary.org/obo/CLO_0053001 | denotes | 1–14 |
T138 | 935-937 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 45 |
T139 | 970-976 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
T140 | 1116-1123 | http://purl.obolibrary.org/obo/UBERON_0003100 | denotes | females |
T141 | 1129-1131 | http://purl.obolibrary.org/obo/CLO_0053794 | denotes | 41 |
T142 | 1358-1359 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T143 | 1486-1491 | http://purl.obolibrary.org/obo/UBERON_0003103 | denotes | organ |
T144 | 1514-1516 | http://purl.obolibrary.org/obo/CLO_0001382 | denotes | 48 |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T50 | 582-589 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20 | 136-146 | http://purl.obolibrary.org/obo/GO_0046903 | denotes | secretions |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T97 | 0-202 | Sentence | denotes | As an emerging acute respiratory infectious disease, COVID-19 primarily spreads through the respiratory tract, by droplets, respiratory secretions, and direct contact [41] for a low infective dose [42]. |
T98 | 203-424 | Sentence | denotes | Otherwise, it has been reported a SARS-CoV-2 was isolated from fecal swabs of a severe pneumonia patient on 10 February 2020 from a critical case in the Fifth Affiliated Hospital, Sun Yat-Sen University, Guangdong, China. |
T99 | 425-576 | Sentence | denotes | Likewise, Zhang et al. [43] have found the presence of SARS-CoV-2 in fecal swabs and blood, indicating the possibility of multiple routes transmission. |
T100 | 577-775 | Sentence | denotes | ACE2 protein presents in abundance on lung alveolar epithelial cells and enterocytes of small intestine remarkably [44], which may help understand the routes of infection and disease manifestations. |
T101 | 776-876 | Sentence | denotes | Based on current epidemiological investigation, the incubation period is 1–14 days, mostly 3–7 days. |
T102 | 877-939 | Sentence | denotes | And the COVID-19 is contagious during the latency period [45]. |
T103 | 940-1040 | Sentence | denotes | It is highly transmissible in humans, especially in the elderly and people with underlying diseases. |
T104 | 1041-1137 | Sentence | denotes | The median age of patients is 47–59 years, and 41.9–45.7% of patients were females [16, 41, 46]. |
T105 | 1138-1265 | Sentence | denotes | As it is designated SARS-CoV-2, COVID-19 patients presented certainly similar symptoms, such as fever, malaise, and cough [47]. |
T106 | 1266-1518 | Sentence | denotes | Most adults or children with SARS-CoV-2 infection presented with mild flu-like symptoms and a few patients are in critical condition and rapidly develop acute respiratory distress syndrome, respiratory failure, multiple organ failure, even deaths [48]. |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T15 | 290-299 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
T16 | 1234-1239 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
T17 | 1241-1248 | Phenotype | denotes | malaise | http://purl.obolibrary.org/obo/HP_0012378 |
T18 | 1254-1259 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
T19 | 1425-1445 | Phenotype | denotes | respiratory distress | http://purl.obolibrary.org/obo/HP_0002098 |
T20 | 1456-1475 | Phenotype | denotes | respiratory failure | http://purl.obolibrary.org/obo/HP_0002878 |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32169119-32065057-70132214 | 449-451 | 32065057 | denotes | 43 |
32169119-15141377-70132215 | 693-695 | 15141377 | denotes | 44 |
32169119-32029004-70132216 | 935-937 | 32029004 | denotes | 45 |
32169119-12671061-70132217 | 1261-1263 | 12671061 | denotes | 47 |
32169119-31986264-70132218 | 1514-1516 | 31986264 | denotes | 48 |