PMC:7068163 / 3575-3950 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7068163","sourcedb":"PMC","sourceid":"7068163","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7068163","text":"Each sample was tested by three PCRs: the screening assay for the E gene and two confirmatory assays targeting the RdRp gene, all performed as recommended in [5], with either both probes (RdRP_SARSr-P1 and RdRP_SARSr-P2), detecting SARS-CoV and SARS-CoV-2, or only with the SARS-CoV-2-specific probe RdRP_SARSr-P2 [5]. We used human RNAse P as control for RNA extraction [7].","tracks":[{"project":"LitCovid-PubTator","denotations":[{"id":"60","span":{"begin":232,"end":240},"obj":"Species"},{"id":"61","span":{"begin":245,"end":255},"obj":"Species"},{"id":"62","span":{"begin":274,"end":284},"obj":"Species"},{"id":"63","span":{"begin":327,"end":332},"obj":"Species"}],"attributes":[{"id":"A60","pred":"tao:has_database_id","subj":"60","obj":"Tax:694009"},{"id":"A61","pred":"tao:has_database_id","subj":"61","obj":"Tax:2697049"},{"id":"A62","pred":"tao:has_database_id","subj":"62","obj":"Tax:2697049"},{"id":"A63","pred":"tao:has_database_id","subj":"63","obj":"Tax:9606"},{"subj":"60","pred":"source","obj":"LitCovid-PubTator"},{"subj":"61","pred":"source","obj":"LitCovid-PubTator"},{"subj":"62","pred":"source","obj":"LitCovid-PubTator"},{"subj":"63","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T9","span":{"begin":68,"end":72},"obj":"Body_part"},{"id":"T10","span":{"begin":120,"end":124},"obj":"Body_part"},{"id":"T11","span":{"begin":356,"end":359},"obj":"Body_part"}],"attributes":[{"id":"A9","pred":"fma_id","subj":"T9","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A10","pred":"fma_id","subj":"T10","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A11","pred":"fma_id","subj":"T11","obj":"http://purl.org/sig/ont/fma/fma67095"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T11","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T17","span":{"begin":232,"end":240},"obj":"Disease"},{"id":"T18","span":{"begin":245,"end":253},"obj":"Disease"},{"id":"T19","span":{"begin":274,"end":282},"obj":"Disease"}],"attributes":[{"id":"A17","pred":"mondo_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A18","pred":"mondo_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A19","pred":"mondo_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T17","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T18","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T19","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T21","span":{"begin":16,"end":22},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T22","span":{"begin":68,"end":72},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T23","span":{"begin":120,"end":124},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T24","span":{"begin":199,"end":201},"obj":"http://purl.obolibrary.org/obo/CLO_0008285"},{"id":"T25","span":{"begin":217,"end":219},"obj":"http://purl.obolibrary.org/obo/CLO_0008307"},{"id":"T26","span":{"begin":311,"end":313},"obj":"http://purl.obolibrary.org/obo/CLO_0008307"},{"id":"T27","span":{"begin":327,"end":332},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"}],"attributes":[{"subj":"T21","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T25","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T26","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T27","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T7","span":{"begin":199,"end":201},"obj":"Chemical"},{"id":"T8","span":{"begin":217,"end":219},"obj":"Chemical"},{"id":"T9","span":{"begin":294,"end":299},"obj":"Chemical"},{"id":"T10","span":{"begin":311,"end":313},"obj":"Chemical"}],"attributes":[{"id":"A7","pred":"chebi_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/CHEBI_60949"},{"id":"A8","pred":"chebi_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/CHEBI_33472"},{"id":"A9","pred":"chebi_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/CHEBI_50406"},{"id":"A10","pred":"chebi_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/CHEBI_33472"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T2","span":{"begin":333,"end":340},"obj":"http://purl.obolibrary.org/obo/GO_0004526"}],"attributes":[{"subj":"T2","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T25","span":{"begin":0,"end":318},"obj":"Sentence"},{"id":"T26","span":{"begin":319,"end":375},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T25","pred":"source","obj":"LitCovid-sentences"},{"subj":"T26","pred":"source","obj":"LitCovid-sentences"}]},{"project":"2_test","denotations":[{"id":"32156330-31992387-29325815","span":{"begin":159,"end":160},"obj":"31992387"},{"id":"32156330-31992387-29325816","span":{"begin":315,"end":316},"obj":"31992387"},{"id":"32156330-16274752-29325817","span":{"begin":372,"end":373},"obj":"16274752"}],"attributes":[{"subj":"32156330-31992387-29325815","pred":"source","obj":"2_test"},{"subj":"32156330-31992387-29325816","pred":"source","obj":"2_test"},{"subj":"32156330-16274752-29325817","pred":"source","obj":"2_test"}]},{"project":"MyTest","denotations":[{"id":"32156330-31992387-29325815","span":{"begin":159,"end":160},"obj":"31992387"},{"id":"32156330-31992387-29325816","span":{"begin":315,"end":316},"obj":"31992387"},{"id":"32156330-16274752-29325817","span":{"begin":372,"end":373},"obj":"16274752"}],"namespaces":[{"prefix":"_base","uri":"https://www.uniprot.org/uniprot/testbase"},{"prefix":"UniProtKB","uri":"https://www.uniprot.org/uniprot/"},{"prefix":"uniprot","uri":"https://www.uniprot.org/uniprotkb/"}],"attributes":[{"subj":"32156330-31992387-29325815","pred":"source","obj":"MyTest"},{"subj":"32156330-31992387-29325816","pred":"source","obj":"MyTest"},{"subj":"32156330-16274752-29325817","pred":"source","obj":"MyTest"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PubTator","color":"#ce93ec","default":true},{"id":"LitCovid-PD-FMA-UBERON","color":"#93ecb4"},{"id":"LitCovid-PD-MONDO","color":"#ec9a93"},{"id":"LitCovid-PD-CLO","color":"#93a5ec"},{"id":"LitCovid-PD-CHEBI","color":"#bfec93"},{"id":"LitCovid-PD-GO-BP","color":"#ec93d9"},{"id":"LitCovid-sentences","color":"#93ece5"},{"id":"2_test","color":"#eccb93"},{"id":"MyTest","color":"#b193ec"}]}]}}