PMC:7067204 / 5363-7028
Annnotations
LitCovid-PubTator
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number Name displayed on the tree Name of full-length genome Year\nAY274119 Human SARS-CoV Tor2 2003 SARS-related coronavirus isolate Tor2 2003\nAY278488 Human SARS-CoV BJ01 2003 SARS coronavirus BJ01 2003\nAY278491 SARS coronavirus HKU-39849 2003 SARS coronavirus HKU-39849 2003 2003\nAY390556 Human SARS-CoV GZ02 2003 SARS coronavirus GZ02 2003\nAY391777 Human CoV OC43 2003 Human coronavirus OC43 2003\nAY515512 Paguma SARS CoV HC/SZ/61/03 2003 SARS coronavirus HC/SZ/61/03 (paguma SARS) 2018\nEF065513 Bat CoV HKU9-1 2006 Bat coronavirus HKU9-1 2006\nFJ588686 Bat SL-CoV Rs672 2006 Bat SARS CoV Rs672/2006 2006\nKC881005 Bat SL-CoV RsSHC014 2013 Bat SARS-like coronavirus RsSHC014 2013\nKC881006 Bat SL-CoV Rs3367 2013 Bat SARS-like coronavirus Rs3367 2013\nKY417146 Bat SL-CoV Rs4231 2016 Bat SARS-like coronavirus isolate Rs4231 2016\nKY417149 Bat SL-CoV Rs4255 2016 Bat SARS-like coronavirus isolate Rs4255 2016\nMG772933 Bat SL-CoV ZC45 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZC45 2018\nMG772934 Bat SL-CoV ZXC21 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZXC21 2018\nMK211377 Bat CoV YN2018C 2018 Coronavirus BtRs-BetaCoV/YN2018C 2018\nMK211378 Bat CoV YN2018D 2018 Coronavirus BtRs-BetaCoV/YN2018Da 2018\nMN975262 HKU-SZ-005b Human 2019-nCoV HKU-SZ-005b 2020\nNC002645 Human CoV 229E 2000 Human coronavirus 229E 2000\nNC006577 Human CoV HKU1 2004 Human coronavirus HKU1 2004\nNC009019 Bat CoV HKU4-1 2006 Bat coronavirus HKU4-1 2006\nNC009020 Bat CoV HKU5-1 2006 Bat coronavirus HKU5-1 2006\nNC014470 Bat SARS-related CoV BM48-31 2009 Bat coronavirus BM48-31/BGR/2008 2008\nNC019843 Human MERS-CoV 2012 Middle East respiratory syndrome coronavirus 2012"}
LitCovid-PD-FMA-UBERON
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LitCovid-PD-MONDO
{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T32","span":{"begin":91,"end":99},"obj":"Disease"},{"id":"T33","span":{"begin":110,"end":114},"obj":"Disease"},{"id":"T34","span":{"begin":168,"end":176},"obj":"Disease"},{"id":"T35","span":{"begin":187,"end":191},"obj":"Disease"},{"id":"T36","span":{"begin":223,"end":227},"obj":"Disease"},{"id":"T37","span":{"begin":255,"end":259},"obj":"Disease"},{"id":"T38","span":{"begin":307,"end":315},"obj":"Disease"},{"id":"T39","span":{"begin":326,"end":330},"obj":"Disease"},{"id":"T40","span":{"begin":426,"end":430},"obj":"Disease"},{"id":"T41","span":{"begin":452,"end":456},"obj":"Disease"},{"id":"T42","span":{"begin":489,"end":493},"obj":"Disease"},{"id":"T43","span":{"begin":592,"end":596},"obj":"Disease"},{"id":"T44","span":{"begin":655,"end":659},"obj":"Disease"},{"id":"T45","span":{"begin":727,"end":731},"obj":"Disease"},{"id":"T46","span":{"begin":797,"end":801},"obj":"Disease"},{"id":"T47","span":{"begin":875,"end":879},"obj":"Disease"},{"id":"T48","span":{"begin":951,"end":955},"obj":"Disease"},{"id":"T49","span":{"begin":1036,"end":1040},"obj":"Disease"},{"id":"T50","span":{"begin":1519,"end":1523},"obj":"Disease"}],"attributes":[{"id":"A32","pred":"mondo_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A33","pred":"mondo_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A34","pred":"mondo_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A35","pred":"mondo_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A36","pred":"mondo_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A37","pred":"mondo_id","subj":"T37","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A38","pred":"mondo_id","subj":"T38","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A39","pred":"mondo_id","subj":"T39","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A40","pred":"mondo_id","subj":"T40","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A41","pred":"mondo_id","subj":"T41","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A42","pred":"mondo_id","subj":"T42","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A43","pred":"mondo_id","subj":"T43","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A44","pred":"mondo_id","subj":"T44","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A45","pred":"mondo_id","subj":"T45","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A46","pred":"mondo_id","subj":"T46","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A47","pred":"mondo_id","subj":"T47","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A48","pred":"mondo_id","subj":"T48","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A49","pred":"mondo_id","subj":"T49","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A50","pred":"mondo_id","subj":"T50","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Accession number Name displayed on the tree Name of full-length genome Year\nAY274119 Human SARS-CoV Tor2 2003 SARS-related coronavirus isolate Tor2 2003\nAY278488 Human SARS-CoV BJ01 2003 SARS coronavirus BJ01 2003\nAY278491 SARS coronavirus HKU-39849 2003 SARS coronavirus HKU-39849 2003 2003\nAY390556 Human SARS-CoV GZ02 2003 SARS coronavirus GZ02 2003\nAY391777 Human CoV OC43 2003 Human coronavirus OC43 2003\nAY515512 Paguma SARS CoV HC/SZ/61/03 2003 SARS coronavirus HC/SZ/61/03 (paguma SARS) 2018\nEF065513 Bat CoV HKU9-1 2006 Bat coronavirus HKU9-1 2006\nFJ588686 Bat SL-CoV Rs672 2006 Bat SARS CoV Rs672/2006 2006\nKC881005 Bat SL-CoV RsSHC014 2013 Bat SARS-like coronavirus RsSHC014 2013\nKC881006 Bat SL-CoV Rs3367 2013 Bat SARS-like coronavirus Rs3367 2013\nKY417146 Bat SL-CoV Rs4231 2016 Bat SARS-like coronavirus isolate Rs4231 2016\nKY417149 Bat SL-CoV Rs4255 2016 Bat SARS-like coronavirus isolate Rs4255 2016\nMG772933 Bat SL-CoV ZC45 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZC45 2018\nMG772934 Bat SL-CoV ZXC21 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZXC21 2018\nMK211377 Bat CoV YN2018C 2018 Coronavirus BtRs-BetaCoV/YN2018C 2018\nMK211378 Bat CoV YN2018D 2018 Coronavirus BtRs-BetaCoV/YN2018Da 2018\nMN975262 HKU-SZ-005b Human 2019-nCoV HKU-SZ-005b 2020\nNC002645 Human CoV 229E 2000 Human coronavirus 229E 2000\nNC006577 Human CoV HKU1 2004 Human coronavirus HKU1 2004\nNC009019 Bat CoV HKU4-1 2006 Bat coronavirus HKU4-1 2006\nNC009020 Bat CoV HKU5-1 2006 Bat coronavirus HKU5-1 2006\nNC014470 Bat SARS-related CoV BM48-31 2009 Bat coronavirus BM48-31/BGR/2008 2008\nNC019843 Human MERS-CoV 2012 Middle East respiratory syndrome coronavirus 2012"}
LitCovid-PD-CLO
{"project":"LitCovid-PD-CLO","denotations":[{"id":"T65","span":{"begin":85,"end":90},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T66","span":{"begin":162,"end":167},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T67","span":{"begin":301,"end":306},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T68","span":{"begin":362,"end":367},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T69","span":{"begin":382,"end":387},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T70","span":{"begin":495,"end":499},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T71","span":{"begin":942,"end":946},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T72","span":{"begin":981,"end":984},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T73","span":{"begin":996,"end":1000},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T74","span":{"begin":1027,"end":1031},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T75","span":{"begin":1066,"end":1069},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T76","span":{"begin":1082,"end":1086},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T77","span":{"begin":1112,"end":1116},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T78","span":{"begin":1150,"end":1154},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T79","span":{"begin":1180,"end":1184},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T80","span":{"begin":1219,"end":1223},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T81","span":{"begin":1245,"end":1250},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T82","span":{"begin":1287,"end":1292},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T83","span":{"begin":1307,"end":1312},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T84","span":{"begin":1344,"end":1349},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T85","span":{"begin":1364,"end":1369},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T86","span":{"begin":1573,"end":1576},"obj":"http://purl.obolibrary.org/obo/PR_000001807"},{"id":"T87","span":{"begin":1596,"end":1601},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"}],"text":"Accession number Name displayed on the tree Name of full-length genome Year\nAY274119 Human SARS-CoV Tor2 2003 SARS-related coronavirus isolate Tor2 2003\nAY278488 Human SARS-CoV BJ01 2003 SARS coronavirus BJ01 2003\nAY278491 SARS coronavirus HKU-39849 2003 SARS coronavirus HKU-39849 2003 2003\nAY390556 Human SARS-CoV GZ02 2003 SARS coronavirus GZ02 2003\nAY391777 Human CoV OC43 2003 Human coronavirus OC43 2003\nAY515512 Paguma SARS CoV HC/SZ/61/03 2003 SARS coronavirus HC/SZ/61/03 (paguma SARS) 2018\nEF065513 Bat CoV HKU9-1 2006 Bat coronavirus HKU9-1 2006\nFJ588686 Bat SL-CoV Rs672 2006 Bat SARS CoV Rs672/2006 2006\nKC881005 Bat SL-CoV RsSHC014 2013 Bat SARS-like coronavirus RsSHC014 2013\nKC881006 Bat SL-CoV Rs3367 2013 Bat SARS-like coronavirus Rs3367 2013\nKY417146 Bat SL-CoV Rs4231 2016 Bat SARS-like coronavirus isolate Rs4231 2016\nKY417149 Bat SL-CoV Rs4255 2016 Bat SARS-like coronavirus isolate Rs4255 2016\nMG772933 Bat SL-CoV ZC45 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZC45 2018\nMG772934 Bat SL-CoV ZXC21 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZXC21 2018\nMK211377 Bat CoV YN2018C 2018 Coronavirus BtRs-BetaCoV/YN2018C 2018\nMK211378 Bat CoV YN2018D 2018 Coronavirus BtRs-BetaCoV/YN2018Da 2018\nMN975262 HKU-SZ-005b Human 2019-nCoV HKU-SZ-005b 2020\nNC002645 Human CoV 229E 2000 Human coronavirus 229E 2000\nNC006577 Human CoV HKU1 2004 Human coronavirus HKU1 2004\nNC009019 Bat CoV HKU4-1 2006 Bat coronavirus HKU4-1 2006\nNC009020 Bat CoV HKU5-1 2006 Bat coronavirus HKU5-1 2006\nNC014470 Bat SARS-related CoV BM48-31 2009 Bat coronavirus BM48-31/BGR/2008 2008\nNC019843 Human MERS-CoV 2012 Middle East respiratory syndrome coronavirus 2012"}
LitCovid-PD-CHEBI
{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T12","span":{"begin":570,"end":572},"obj":"Chemical"},{"id":"T13","span":{"begin":630,"end":632},"obj":"Chemical"},{"id":"T14","span":{"begin":704,"end":706},"obj":"Chemical"},{"id":"T15","span":{"begin":774,"end":776},"obj":"Chemical"},{"id":"T16","span":{"begin":852,"end":854},"obj":"Chemical"},{"id":"T17","span":{"begin":930,"end":932},"obj":"Chemical"},{"id":"T18","span":{"begin":985,"end":987},"obj":"Chemical"},{"id":"T19","span":{"begin":1014,"end":1016},"obj":"Chemical"},{"id":"T20","span":{"begin":1070,"end":1072},"obj":"Chemical"}],"attributes":[{"id":"A12","pred":"chebi_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A13","pred":"chebi_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A14","pred":"chebi_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A15","pred":"chebi_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A16","pred":"chebi_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A17","pred":"chebi_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A18","pred":"chebi_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A19","pred":"chebi_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A20","pred":"chebi_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"}],"text":"Accession number Name displayed on the tree Name of full-length genome Year\nAY274119 Human SARS-CoV Tor2 2003 SARS-related coronavirus isolate Tor2 2003\nAY278488 Human SARS-CoV BJ01 2003 SARS coronavirus BJ01 2003\nAY278491 SARS coronavirus HKU-39849 2003 SARS coronavirus HKU-39849 2003 2003\nAY390556 Human SARS-CoV GZ02 2003 SARS coronavirus GZ02 2003\nAY391777 Human CoV OC43 2003 Human coronavirus OC43 2003\nAY515512 Paguma SARS CoV HC/SZ/61/03 2003 SARS coronavirus HC/SZ/61/03 (paguma SARS) 2018\nEF065513 Bat CoV HKU9-1 2006 Bat coronavirus HKU9-1 2006\nFJ588686 Bat SL-CoV Rs672 2006 Bat SARS CoV Rs672/2006 2006\nKC881005 Bat SL-CoV RsSHC014 2013 Bat SARS-like coronavirus RsSHC014 2013\nKC881006 Bat SL-CoV Rs3367 2013 Bat SARS-like coronavirus Rs3367 2013\nKY417146 Bat SL-CoV Rs4231 2016 Bat SARS-like coronavirus isolate Rs4231 2016\nKY417149 Bat SL-CoV Rs4255 2016 Bat SARS-like coronavirus isolate Rs4255 2016\nMG772933 Bat SL-CoV ZC45 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZC45 2018\nMG772934 Bat SL-CoV ZXC21 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZXC21 2018\nMK211377 Bat CoV YN2018C 2018 Coronavirus BtRs-BetaCoV/YN2018C 2018\nMK211378 Bat CoV YN2018D 2018 Coronavirus BtRs-BetaCoV/YN2018Da 2018\nMN975262 HKU-SZ-005b Human 2019-nCoV HKU-SZ-005b 2020\nNC002645 Human CoV 229E 2000 Human coronavirus 229E 2000\nNC006577 Human CoV HKU1 2004 Human coronavirus HKU1 2004\nNC009019 Bat CoV HKU4-1 2006 Bat coronavirus HKU4-1 2006\nNC009020 Bat CoV HKU5-1 2006 Bat coronavirus HKU5-1 2006\nNC014470 Bat SARS-related CoV BM48-31 2009 Bat coronavirus BM48-31/BGR/2008 2008\nNC019843 Human MERS-CoV 2012 Middle East respiratory syndrome coronavirus 2012"}
LitCovid-sentences
{"project":"LitCovid-sentences","denotations":[{"id":"T45","span":{"begin":0,"end":75},"obj":"Sentence"},{"id":"T46","span":{"begin":76,"end":152},"obj":"Sentence"},{"id":"T47","span":{"begin":153,"end":213},"obj":"Sentence"},{"id":"T48","span":{"begin":214,"end":291},"obj":"Sentence"},{"id":"T49","span":{"begin":292,"end":352},"obj":"Sentence"},{"id":"T50","span":{"begin":353,"end":409},"obj":"Sentence"},{"id":"T51","span":{"begin":410,"end":499},"obj":"Sentence"},{"id":"T52","span":{"begin":500,"end":556},"obj":"Sentence"},{"id":"T53","span":{"begin":557,"end":616},"obj":"Sentence"},{"id":"T54","span":{"begin":617,"end":690},"obj":"Sentence"},{"id":"T55","span":{"begin":691,"end":760},"obj":"Sentence"},{"id":"T56","span":{"begin":761,"end":838},"obj":"Sentence"},{"id":"T57","span":{"begin":839,"end":916},"obj":"Sentence"},{"id":"T58","span":{"begin":917,"end":1000},"obj":"Sentence"},{"id":"T59","span":{"begin":1001,"end":1086},"obj":"Sentence"},{"id":"T60","span":{"begin":1087,"end":1154},"obj":"Sentence"},{"id":"T61","span":{"begin":1155,"end":1223},"obj":"Sentence"},{"id":"T62","span":{"begin":1224,"end":1277},"obj":"Sentence"},{"id":"T63","span":{"begin":1278,"end":1334},"obj":"Sentence"},{"id":"T64","span":{"begin":1335,"end":1391},"obj":"Sentence"},{"id":"T65","span":{"begin":1392,"end":1448},"obj":"Sentence"},{"id":"T66","span":{"begin":1449,"end":1505},"obj":"Sentence"},{"id":"T67","span":{"begin":1506,"end":1586},"obj":"Sentence"},{"id":"T68","span":{"begin":1587,"end":1665},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Accession number Name displayed on the tree Name of full-length genome Year\nAY274119 Human SARS-CoV Tor2 2003 SARS-related coronavirus isolate Tor2 2003\nAY278488 Human SARS-CoV BJ01 2003 SARS coronavirus BJ01 2003\nAY278491 SARS coronavirus HKU-39849 2003 SARS coronavirus HKU-39849 2003 2003\nAY390556 Human SARS-CoV GZ02 2003 SARS coronavirus GZ02 2003\nAY391777 Human CoV OC43 2003 Human coronavirus OC43 2003\nAY515512 Paguma SARS CoV HC/SZ/61/03 2003 SARS coronavirus HC/SZ/61/03 (paguma SARS) 2018\nEF065513 Bat CoV HKU9-1 2006 Bat coronavirus HKU9-1 2006\nFJ588686 Bat SL-CoV Rs672 2006 Bat SARS CoV Rs672/2006 2006\nKC881005 Bat SL-CoV RsSHC014 2013 Bat SARS-like coronavirus RsSHC014 2013\nKC881006 Bat SL-CoV Rs3367 2013 Bat SARS-like coronavirus Rs3367 2013\nKY417146 Bat SL-CoV Rs4231 2016 Bat SARS-like coronavirus isolate Rs4231 2016\nKY417149 Bat SL-CoV Rs4255 2016 Bat SARS-like coronavirus isolate Rs4255 2016\nMG772933 Bat SL-CoV ZC45 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZC45 2018\nMG772934 Bat SL-CoV ZXC21 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZXC21 2018\nMK211377 Bat CoV YN2018C 2018 Coronavirus BtRs-BetaCoV/YN2018C 2018\nMK211378 Bat CoV YN2018D 2018 Coronavirus BtRs-BetaCoV/YN2018Da 2018\nMN975262 HKU-SZ-005b Human 2019-nCoV HKU-SZ-005b 2020\nNC002645 Human CoV 229E 2000 Human coronavirus 229E 2000\nNC006577 Human CoV HKU1 2004 Human coronavirus HKU1 2004\nNC009019 Bat CoV HKU4-1 2006 Bat coronavirus HKU4-1 2006\nNC009020 Bat CoV HKU5-1 2006 Bat coronavirus HKU5-1 2006\nNC014470 Bat SARS-related CoV BM48-31 2009 Bat coronavirus BM48-31/BGR/2008 2008\nNC019843 Human MERS-CoV 2012 Middle East respiratory syndrome coronavirus 2012"}