PMC:7067204 / 5312-7103 JSONTXT

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1. List of coronaviruses used in this study.\nAccession number Name displayed on the tree Name of full-length genome Year\nAY274119 Human SARS-CoV Tor2 2003 SARS-related coronavirus isolate Tor2 2003\nAY278488 Human SARS-CoV BJ01 2003 SARS coronavirus BJ01 2003\nAY278491 SARS coronavirus HKU-39849 2003 SARS coronavirus HKU-39849 2003 2003\nAY390556 Human SARS-CoV GZ02 2003 SARS coronavirus GZ02 2003\nAY391777 Human CoV OC43 2003 Human coronavirus OC43 2003\nAY515512 Paguma SARS CoV HC/SZ/61/03 2003 SARS coronavirus HC/SZ/61/03 (paguma SARS) 2018\nEF065513 Bat CoV HKU9-1 2006 Bat coronavirus HKU9-1 2006\nFJ588686 Bat SL-CoV Rs672 2006 Bat SARS CoV Rs672/2006 2006\nKC881005 Bat SL-CoV RsSHC014 2013 Bat SARS-like coronavirus RsSHC014 2013\nKC881006 Bat SL-CoV Rs3367 2013 Bat SARS-like coronavirus Rs3367 2013\nKY417146 Bat SL-CoV Rs4231 2016 Bat SARS-like coronavirus isolate Rs4231 2016\nKY417149 Bat SL-CoV Rs4255 2016 Bat SARS-like coronavirus isolate Rs4255 2016\nMG772933 Bat SL-CoV ZC45 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZC45 2018\nMG772934 Bat SL-CoV ZXC21 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZXC21 2018\nMK211377 Bat CoV YN2018C 2018 Coronavirus BtRs-BetaCoV/YN2018C 2018\nMK211378 Bat CoV YN2018D 2018 Coronavirus BtRs-BetaCoV/YN2018Da 2018\nMN975262 HKU-SZ-005b Human 2019-nCoV HKU-SZ-005b 2020\nNC002645 Human CoV 229E 2000 Human coronavirus 229E 2000\nNC006577 Human CoV HKU1 2004 Human coronavirus HKU1 2004\nNC009019 Bat CoV HKU4-1 2006 Bat coronavirus HKU4-1 2006\nNC009020 Bat CoV HKU5-1 2006 Bat coronavirus HKU5-1 2006\nNC014470 Bat SARS-related CoV BM48-31 2009 Bat coronavirus BM48-31/BGR/2008 2008\nNC019843 Human MERS-CoV 2012 Middle East respiratory syndrome coronavirus 2012\naOne nucleotide was added within M gene to maintain the sequence in-frame."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T22","span":{"begin":115,"end":121},"obj":"Body_part"},{"id":"T23","span":{"begin":1722,"end":1732},"obj":"Body_part"},{"id":"T24","span":{"begin":1752,"end":1756},"obj":"Body_part"}],"attributes":[{"id":"A22","pred":"fma_id","subj":"T22","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A23","pred":"fma_id","subj":"T23","obj":"http://purl.org/sig/ont/fma/fma82740"},{"id":"A24","pred":"fma_id","subj":"T24","obj":"http://purl.org/sig/ont/fma/fma74402"}],"text":"Table 1. List of coronaviruses used in this study.\nAccession number Name displayed on the tree Name of full-length genome Year\nAY274119 Human SARS-CoV Tor2 2003 SARS-related coronavirus isolate Tor2 2003\nAY278488 Human SARS-CoV BJ01 2003 SARS coronavirus BJ01 2003\nAY278491 SARS coronavirus HKU-39849 2003 SARS coronavirus HKU-39849 2003 2003\nAY390556 Human SARS-CoV GZ02 2003 SARS coronavirus GZ02 2003\nAY391777 Human CoV OC43 2003 Human coronavirus OC43 2003\nAY515512 Paguma SARS CoV HC/SZ/61/03 2003 SARS coronavirus HC/SZ/61/03 (paguma SARS) 2018\nEF065513 Bat CoV HKU9-1 2006 Bat coronavirus HKU9-1 2006\nFJ588686 Bat SL-CoV Rs672 2006 Bat SARS CoV Rs672/2006 2006\nKC881005 Bat SL-CoV RsSHC014 2013 Bat SARS-like coronavirus RsSHC014 2013\nKC881006 Bat SL-CoV Rs3367 2013 Bat SARS-like coronavirus Rs3367 2013\nKY417146 Bat SL-CoV Rs4231 2016 Bat SARS-like coronavirus isolate Rs4231 2016\nKY417149 Bat SL-CoV Rs4255 2016 Bat SARS-like coronavirus isolate Rs4255 2016\nMG772933 Bat SL-CoV ZC45 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZC45 2018\nMG772934 Bat SL-CoV ZXC21 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZXC21 2018\nMK211377 Bat CoV YN2018C 2018 Coronavirus BtRs-BetaCoV/YN2018C 2018\nMK211378 Bat CoV YN2018D 2018 Coronavirus BtRs-BetaCoV/YN2018Da 2018\nMN975262 HKU-SZ-005b Human 2019-nCoV HKU-SZ-005b 2020\nNC002645 Human CoV 229E 2000 Human coronavirus 229E 2000\nNC006577 Human CoV HKU1 2004 Human coronavirus HKU1 2004\nNC009019 Bat CoV HKU4-1 2006 Bat coronavirus HKU4-1 2006\nNC009020 Bat CoV HKU5-1 2006 Bat coronavirus HKU5-1 2006\nNC014470 Bat SARS-related CoV BM48-31 2009 Bat coronavirus BM48-31/BGR/2008 2008\nNC019843 Human MERS-CoV 2012 Middle East respiratory syndrome coronavirus 2012\naOne nucleotide was added within M gene to maintain the sequence in-frame."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T32","span":{"begin":142,"end":150},"obj":"Disease"},{"id":"T33","span":{"begin":161,"end":165},"obj":"Disease"},{"id":"T34","span":{"begin":219,"end":227},"obj":"Disease"},{"id":"T35","span":{"begin":238,"end":242},"obj":"Disease"},{"id":"T36","span":{"begin":274,"end":278},"obj":"Disease"},{"id":"T37","span":{"begin":306,"end":310},"obj":"Disease"},{"id":"T38","span":{"begin":358,"end":366},"obj":"Disease"},{"id":"T39","span":{"begin":377,"end":381},"obj":"Disease"},{"id":"T40","span":{"begin":477,"end":481},"obj":"Disease"},{"id":"T41","span":{"begin":503,"end":507},"obj":"Disease"},{"id":"T42","span":{"begin":540,"end":544},"obj":"Disease"},{"id":"T43","span":{"begin":643,"end":647},"obj":"Disease"},{"id":"T44","span":{"begin":706,"end":710},"obj":"Disease"},{"id":"T45","span":{"begin":778,"end":782},"obj":"Disease"},{"id":"T46","span":{"begin":848,"end":852},"obj":"Disease"},{"id":"T47","span":{"begin":926,"end":930},"obj":"Disease"},{"id":"T48","span":{"begin":1002,"end":1006},"obj":"Disease"},{"id":"T49","span":{"begin":1087,"end":1091},"obj":"Disease"},{"id":"T50","span":{"begin":1570,"end":1574},"obj":"Disease"}],"attributes":[{"id":"A32","pred":"mondo_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A33","pred":"mondo_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A34","pred":"mondo_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A35","pred":"mondo_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A36","pred":"mondo_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A37","pred":"mondo_id","subj":"T37","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A38","pred":"mondo_id","subj":"T38","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A39","pred":"mondo_id","subj":"T39","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A40","pred":"mondo_id","subj":"T40","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A41","pred":"mondo_id","subj":"T41","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A42","pred":"mondo_id","subj":"T42","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A43","pred":"mondo_id","subj":"T43","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A44","pred":"mondo_id","subj":"T44","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A45","pred":"mondo_id","subj":"T45","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A46","pred":"mondo_id","subj":"T46","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A47","pred":"mondo_id","subj":"T47","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A48","pred":"mondo_id","subj":"T48","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A49","pred":"mondo_id","subj":"T49","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A50","pred":"mondo_id","subj":"T50","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Table 1. List of coronaviruses used in this study.\nAccession number Name displayed on the tree Name of full-length genome Year\nAY274119 Human SARS-CoV Tor2 2003 SARS-related coronavirus isolate Tor2 2003\nAY278488 Human SARS-CoV BJ01 2003 SARS coronavirus BJ01 2003\nAY278491 SARS coronavirus HKU-39849 2003 SARS coronavirus HKU-39849 2003 2003\nAY390556 Human SARS-CoV GZ02 2003 SARS coronavirus GZ02 2003\nAY391777 Human CoV OC43 2003 Human coronavirus OC43 2003\nAY515512 Paguma SARS CoV HC/SZ/61/03 2003 SARS coronavirus HC/SZ/61/03 (paguma SARS) 2018\nEF065513 Bat CoV HKU9-1 2006 Bat coronavirus HKU9-1 2006\nFJ588686 Bat SL-CoV Rs672 2006 Bat SARS CoV Rs672/2006 2006\nKC881005 Bat SL-CoV RsSHC014 2013 Bat SARS-like coronavirus RsSHC014 2013\nKC881006 Bat SL-CoV Rs3367 2013 Bat SARS-like coronavirus Rs3367 2013\nKY417146 Bat SL-CoV Rs4231 2016 Bat SARS-like coronavirus isolate Rs4231 2016\nKY417149 Bat SL-CoV Rs4255 2016 Bat SARS-like coronavirus isolate Rs4255 2016\nMG772933 Bat SL-CoV ZC45 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZC45 2018\nMG772934 Bat SL-CoV ZXC21 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZXC21 2018\nMK211377 Bat CoV YN2018C 2018 Coronavirus BtRs-BetaCoV/YN2018C 2018\nMK211378 Bat CoV YN2018D 2018 Coronavirus BtRs-BetaCoV/YN2018Da 2018\nMN975262 HKU-SZ-005b Human 2019-nCoV HKU-SZ-005b 2020\nNC002645 Human CoV 229E 2000 Human coronavirus 229E 2000\nNC006577 Human CoV HKU1 2004 Human coronavirus HKU1 2004\nNC009019 Bat CoV HKU4-1 2006 Bat coronavirus HKU4-1 2006\nNC009020 Bat CoV HKU5-1 2006 Bat coronavirus HKU5-1 2006\nNC014470 Bat SARS-related CoV BM48-31 2009 Bat coronavirus BM48-31/BGR/2008 2008\nNC019843 Human MERS-CoV 2012 Middle East respiratory syndrome coronavirus 2012\naOne nucleotide was added within M gene to maintain the sequence in-frame."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T65","span":{"begin":136,"end":141},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T66","span":{"begin":213,"end":218},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T67","span":{"begin":352,"end":357},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T68","span":{"begin":413,"end":418},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T69","span":{"begin":433,"end":438},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T70","span":{"begin":546,"end":550},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T71","span":{"begin":993,"end":997},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T72","span":{"begin":1032,"end":1035},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T73","span":{"begin":1047,"end":1051},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T74","span":{"begin":1078,"end":1082},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T75","span":{"begin":1117,"end":1120},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T76","span":{"begin":1133,"end":1137},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T77","span":{"begin":1163,"end":1167},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T78","span":{"begin":1201,"end":1205},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T79","span":{"begin":1231,"end":1235},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T80","span":{"begin":1270,"end":1274},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T81","span":{"begin":1296,"end":1301},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T82","span":{"begin":1338,"end":1343},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T83","span":{"begin":1358,"end":1363},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T84","span":{"begin":1395,"end":1400},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T85","span":{"begin":1415,"end":1420},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T86","span":{"begin":1624,"end":1627},"obj":"http://purl.obolibrary.org/obo/PR_000001807"},{"id":"T87","span":{"begin":1647,"end":1652},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T88","span":{"begin":1752,"end":1756},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"}],"text":"Table 1. List of coronaviruses used in this study.\nAccession number Name displayed on the tree Name of full-length genome Year\nAY274119 Human SARS-CoV Tor2 2003 SARS-related coronavirus isolate Tor2 2003\nAY278488 Human SARS-CoV BJ01 2003 SARS coronavirus BJ01 2003\nAY278491 SARS coronavirus HKU-39849 2003 SARS coronavirus HKU-39849 2003 2003\nAY390556 Human SARS-CoV GZ02 2003 SARS coronavirus GZ02 2003\nAY391777 Human CoV OC43 2003 Human coronavirus OC43 2003\nAY515512 Paguma SARS CoV HC/SZ/61/03 2003 SARS coronavirus HC/SZ/61/03 (paguma SARS) 2018\nEF065513 Bat CoV HKU9-1 2006 Bat coronavirus HKU9-1 2006\nFJ588686 Bat SL-CoV Rs672 2006 Bat SARS CoV Rs672/2006 2006\nKC881005 Bat SL-CoV RsSHC014 2013 Bat SARS-like coronavirus RsSHC014 2013\nKC881006 Bat SL-CoV Rs3367 2013 Bat SARS-like coronavirus Rs3367 2013\nKY417146 Bat SL-CoV Rs4231 2016 Bat SARS-like coronavirus isolate Rs4231 2016\nKY417149 Bat SL-CoV Rs4255 2016 Bat SARS-like coronavirus isolate Rs4255 2016\nMG772933 Bat SL-CoV ZC45 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZC45 2018\nMG772934 Bat SL-CoV ZXC21 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZXC21 2018\nMK211377 Bat CoV YN2018C 2018 Coronavirus BtRs-BetaCoV/YN2018C 2018\nMK211378 Bat CoV YN2018D 2018 Coronavirus BtRs-BetaCoV/YN2018Da 2018\nMN975262 HKU-SZ-005b Human 2019-nCoV HKU-SZ-005b 2020\nNC002645 Human CoV 229E 2000 Human coronavirus 229E 2000\nNC006577 Human CoV HKU1 2004 Human coronavirus HKU1 2004\nNC009019 Bat CoV HKU4-1 2006 Bat coronavirus HKU4-1 2006\nNC009020 Bat CoV HKU5-1 2006 Bat coronavirus HKU5-1 2006\nNC014470 Bat SARS-related CoV BM48-31 2009 Bat coronavirus BM48-31/BGR/2008 2008\nNC019843 Human MERS-CoV 2012 Middle East respiratory syndrome coronavirus 2012\naOne nucleotide was added within M gene to maintain the sequence in-frame."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T12","span":{"begin":621,"end":623},"obj":"Chemical"},{"id":"T13","span":{"begin":681,"end":683},"obj":"Chemical"},{"id":"T14","span":{"begin":755,"end":757},"obj":"Chemical"},{"id":"T15","span":{"begin":825,"end":827},"obj":"Chemical"},{"id":"T16","span":{"begin":903,"end":905},"obj":"Chemical"},{"id":"T17","span":{"begin":981,"end":983},"obj":"Chemical"},{"id":"T18","span":{"begin":1036,"end":1038},"obj":"Chemical"},{"id":"T19","span":{"begin":1065,"end":1067},"obj":"Chemical"},{"id":"T20","span":{"begin":1121,"end":1123},"obj":"Chemical"},{"id":"T21","span":{"begin":1722,"end":1732},"obj":"Chemical"}],"attributes":[{"id":"A12","pred":"chebi_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A13","pred":"chebi_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A14","pred":"chebi_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A15","pred":"chebi_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A16","pred":"chebi_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A17","pred":"chebi_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A18","pred":"chebi_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A19","pred":"chebi_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A20","pred":"chebi_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A21","pred":"chebi_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/CHEBI_36976"}],"text":"Table 1. List of coronaviruses used in this study.\nAccession number Name displayed on the tree Name of full-length genome Year\nAY274119 Human SARS-CoV Tor2 2003 SARS-related coronavirus isolate Tor2 2003\nAY278488 Human SARS-CoV BJ01 2003 SARS coronavirus BJ01 2003\nAY278491 SARS coronavirus HKU-39849 2003 SARS coronavirus HKU-39849 2003 2003\nAY390556 Human SARS-CoV GZ02 2003 SARS coronavirus GZ02 2003\nAY391777 Human CoV OC43 2003 Human coronavirus OC43 2003\nAY515512 Paguma SARS CoV HC/SZ/61/03 2003 SARS coronavirus HC/SZ/61/03 (paguma SARS) 2018\nEF065513 Bat CoV HKU9-1 2006 Bat coronavirus HKU9-1 2006\nFJ588686 Bat SL-CoV Rs672 2006 Bat SARS CoV Rs672/2006 2006\nKC881005 Bat SL-CoV RsSHC014 2013 Bat SARS-like coronavirus RsSHC014 2013\nKC881006 Bat SL-CoV Rs3367 2013 Bat SARS-like coronavirus Rs3367 2013\nKY417146 Bat SL-CoV Rs4231 2016 Bat SARS-like coronavirus isolate Rs4231 2016\nKY417149 Bat SL-CoV Rs4255 2016 Bat SARS-like coronavirus isolate Rs4255 2016\nMG772933 Bat SL-CoV ZC45 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZC45 2018\nMG772934 Bat SL-CoV ZXC21 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZXC21 2018\nMK211377 Bat CoV YN2018C 2018 Coronavirus BtRs-BetaCoV/YN2018C 2018\nMK211378 Bat CoV YN2018D 2018 Coronavirus BtRs-BetaCoV/YN2018Da 2018\nMN975262 HKU-SZ-005b Human 2019-nCoV HKU-SZ-005b 2020\nNC002645 Human CoV 229E 2000 Human coronavirus 229E 2000\nNC006577 Human CoV HKU1 2004 Human coronavirus HKU1 2004\nNC009019 Bat CoV HKU4-1 2006 Bat coronavirus HKU4-1 2006\nNC009020 Bat CoV HKU5-1 2006 Bat coronavirus HKU5-1 2006\nNC014470 Bat SARS-related CoV BM48-31 2009 Bat coronavirus BM48-31/BGR/2008 2008\nNC019843 Human MERS-CoV 2012 Middle East respiratory syndrome coronavirus 2012\naOne nucleotide was added within M gene to maintain the sequence in-frame."}

{"project":"LitCovid-sentences","denotations":[{"id":"T43","span":{"begin":0,"end":8},"obj":"Sentence"},{"id":"T44","span":{"begin":9,"end":50},"obj":"Sentence"},{"id":"T45","span":{"begin":51,"end":126},"obj":"Sentence"},{"id":"T46","span":{"begin":127,"end":203},"obj":"Sentence"},{"id":"T47","span":{"begin":204,"end":264},"obj":"Sentence"},{"id":"T48","span":{"begin":265,"end":342},"obj":"Sentence"},{"id":"T49","span":{"begin":343,"end":403},"obj":"Sentence"},{"id":"T50","span":{"begin":404,"end":460},"obj":"Sentence"},{"id":"T51","span":{"begin":461,"end":550},"obj":"Sentence"},{"id":"T52","span":{"begin":551,"end":607},"obj":"Sentence"},{"id":"T53","span":{"begin":608,"end":667},"obj":"Sentence"},{"id":"T54","span":{"begin":668,"end":741},"obj":"Sentence"},{"id":"T55","span":{"begin":742,"end":811},"obj":"Sentence"},{"id":"T56","span":{"begin":812,"end":889},"obj":"Sentence"},{"id":"T57","span":{"begin":890,"end":967},"obj":"Sentence"},{"id":"T58","span":{"begin":968,"end":1051},"obj":"Sentence"},{"id":"T59","span":{"begin":1052,"end":1137},"obj":"Sentence"},{"id":"T60","span":{"begin":1138,"end":1205},"obj":"Sentence"},{"id":"T61","span":{"begin":1206,"end":1274},"obj":"Sentence"},{"id":"T62","span":{"begin":1275,"end":1328},"obj":"Sentence"},{"id":"T63","span":{"begin":1329,"end":1385},"obj":"Sentence"},{"id":"T64","span":{"begin":1386,"end":1442},"obj":"Sentence"},{"id":"T65","span":{"begin":1443,"end":1499},"obj":"Sentence"},{"id":"T66","span":{"begin":1500,"end":1556},"obj":"Sentence"},{"id":"T67","span":{"begin":1557,"end":1637},"obj":"Sentence"},{"id":"T68","span":{"begin":1638,"end":1716},"obj":"Sentence"},{"id":"T69","span":{"begin":1717,"end":1791},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Table 1. List of coronaviruses used in this study.\nAccession number Name displayed on the tree Name of full-length genome Year\nAY274119 Human SARS-CoV Tor2 2003 SARS-related coronavirus isolate Tor2 2003\nAY278488 Human SARS-CoV BJ01 2003 SARS coronavirus BJ01 2003\nAY278491 SARS coronavirus HKU-39849 2003 SARS coronavirus HKU-39849 2003 2003\nAY390556 Human SARS-CoV GZ02 2003 SARS coronavirus GZ02 2003\nAY391777 Human CoV OC43 2003 Human coronavirus OC43 2003\nAY515512 Paguma SARS CoV HC/SZ/61/03 2003 SARS coronavirus HC/SZ/61/03 (paguma SARS) 2018\nEF065513 Bat CoV HKU9-1 2006 Bat coronavirus HKU9-1 2006\nFJ588686 Bat SL-CoV Rs672 2006 Bat SARS CoV Rs672/2006 2006\nKC881005 Bat SL-CoV RsSHC014 2013 Bat SARS-like coronavirus RsSHC014 2013\nKC881006 Bat SL-CoV Rs3367 2013 Bat SARS-like coronavirus Rs3367 2013\nKY417146 Bat SL-CoV Rs4231 2016 Bat SARS-like coronavirus isolate Rs4231 2016\nKY417149 Bat SL-CoV Rs4255 2016 Bat SARS-like coronavirus isolate Rs4255 2016\nMG772933 Bat SL-CoV ZC45 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZC45 2018\nMG772934 Bat SL-CoV ZXC21 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZXC21 2018\nMK211377 Bat CoV YN2018C 2018 Coronavirus BtRs-BetaCoV/YN2018C 2018\nMK211378 Bat CoV YN2018D 2018 Coronavirus BtRs-BetaCoV/YN2018Da 2018\nMN975262 HKU-SZ-005b Human 2019-nCoV HKU-SZ-005b 2020\nNC002645 Human CoV 229E 2000 Human coronavirus 229E 2000\nNC006577 Human CoV HKU1 2004 Human coronavirus HKU1 2004\nNC009019 Bat CoV HKU4-1 2006 Bat coronavirus HKU4-1 2006\nNC009020 Bat CoV HKU5-1 2006 Bat coronavirus HKU5-1 2006\nNC014470 Bat SARS-related CoV BM48-31 2009 Bat coronavirus BM48-31/BGR/2008 2008\nNC019843 Human MERS-CoV 2012 Middle East respiratory syndrome coronavirus 2012\naOne nucleotide was added within M gene to maintain the sequence in-frame."}