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PMC:7067204 / 5312-7103 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
369 1566-1569 Gene denotes Bat Gene:570
370 1509-1512 Gene denotes Bat Gene:570
371 1452-1455 Gene denotes Bat Gene:570
372 1215-1218 Gene denotes Bat Gene:570
373 1147-1150 Gene denotes Bat Gene:570
374 1117-1120 Gene denotes bat Gene:570
375 1061-1064 Gene denotes Bat Gene:570
376 1032-1035 Gene denotes bat Gene:570
377 977-980 Gene denotes Bat Gene:570
378 899-902 Gene denotes Bat Gene:570
379 821-824 Gene denotes Bat Gene:570
380 751-754 Gene denotes Bat Gene:570
381 677-680 Gene denotes Bat Gene:570
382 617-620 Gene denotes Bat Gene:570
383 86-89 Gene denotes the Gene:25085
384 540-544 Gene denotes SARS Gene:6301
385 142-150 Species denotes SARS-CoV Tax:694009
386 161-185 Species denotes SARS-related coronavirus Tax:694009
387 219-227 Species denotes SARS-CoV Tax:694009
388 238-259 Species denotes SARS coronavirus BJ01 Tax:228407
389 274-300 Species denotes SARS coronavirus HKU-39849 Tax:228404
390 306-332 Species denotes SARS coronavirus HKU-39849 Tax:228404
391 352-357 Species denotes Human Tax:9606
392 358-366 Species denotes SARS-CoV Tax:694009
393 377-398 Species denotes SARS coronavirus GZ02 Tax:256753
394 413-418 Species denotes Human Tax:9606
395 419-422 Species denotes CoV Tax:11118
396 433-455 Species denotes Human coronavirus OC43 Tax:31631
397 503-531 Species denotes SARS coronavirus HC/SZ/61/03 Tax:260069
398 560-572 Species denotes Bat CoV HKU9 Tax:694006
399 580-602 Species denotes Bat coronavirus HKU9-1 Tax:424367
400 624-627 Species denotes CoV Tax:11118
401 639-662 Species denotes Bat SARS CoV Rs672/2006 Tax:722424
402 684-687 Species denotes CoV Tax:11118
403 702-736 Species denotes Bat SARS-like coronavirus RsSHC014 Tax:1415851
404 758-761 Species denotes CoV Tax:11118
405 774-806 Species denotes Bat SARS-like coronavirus Rs3367 Tax:1415834
406 828-831 Species denotes CoV Tax:11118
407 844-869 Species denotes Bat SARS-like coronavirus Tax:1508227
408 906-909 Species denotes CoV Tax:11118
409 922-947 Species denotes Bat SARS-like coronavirus Tax:1508227
410 984-987 Species denotes CoV Tax:11118
411 998-1023 Species denotes Bat SARS-like coronavirus Tax:1508227
412 1068-1071 Species denotes CoV Tax:11118
413 1083-1108 Species denotes Bat SARS-like coronavirus Tax:1508227
414 1151-1154 Species denotes CoV Tax:11118
415 1168-1200 Species denotes Coronavirus BtRs-BetaCoV/YN2018C Tax:2591236
416 1219-1222 Species denotes CoV Tax:11118
417 1236-1247 Species denotes Coronavirus Tax:11118
418 1253-1260 Species denotes BetaCoV Tax:694002
419 1296-1301 Species denotes Human Tax:9606
420 1302-1311 Species denotes 2019-nCoV Tax:2697049
421 1338-1343 Species denotes Human Tax:9606
422 1344-1347 Species denotes CoV Tax:11118
423 1358-1380 Species denotes Human coronavirus 229E Tax:11137
424 1395-1409 Species denotes Human CoV HKU1 Tax:290028
425 1415-1437 Species denotes Human coronavirus HKU1 Tax:290028
426 1456-1459 Species denotes CoV Tax:11118
427 1472-1494 Species denotes Bat coronavirus HKU4-1 Tax:424359
428 1513-1516 Species denotes CoV Tax:11118
429 1529-1551 Species denotes Bat coronavirus HKU5-1 Tax:424363
430 1570-1586 Species denotes SARS-related CoV Tax:694009
431 1600-1632 Species denotes Bat coronavirus BM48-31/BGR/2008 Tax:864596
432 1647-1652 Species denotes Human Tax:9606
433 1653-1661 Species denotes MERS-CoV Tax:1335626
434 1667-1711 Species denotes Middle East respiratory syndrome coronavirus Tax:1335626
435 367-371 Species denotes GZ02 Tax:256753
436 486-497 Species denotes HC/SZ/61/03 Tax:260069
437 628-638 Species denotes Rs672 2006 Tax:722424
438 1348-1352 Species denotes 229E Tax:11137
439 1460-1466 Species denotes HKU4-1 Tax:424359
440 1517-1523 Species denotes HKU5-1 Tax:424363
441 1275-1287 CellLine denotes MN975262 HKU CVCL:U508
443 17-30 Species denotes coronaviruses Tax:11118
447 1769-1772 Gene denotes the Gene:25085
448 1757-1759 Gene denotes to Gene:6999
449 1717-1732 Chemical denotes aOne nucleotide

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T22 115-121 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T23 1722-1732 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T24 1752-1756 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T32 142-150 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 161-165 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T34 219-227 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 238-242 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T36 274-278 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T37 306-310 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T38 358-366 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T39 377-381 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T40 477-481 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T41 503-507 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T42 540-544 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T43 643-647 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T44 706-710 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T45 778-782 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T46 848-852 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T47 926-930 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T48 1002-1006 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T49 1087-1091 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T50 1570-1574 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T65 136-141 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T66 213-218 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T67 352-357 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T68 413-418 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T69 433-438 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T70 546-550 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T71 993-997 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T72 1032-1035 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T73 1047-1051 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T74 1078-1082 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T75 1117-1120 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T76 1133-1137 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T77 1163-1167 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T78 1201-1205 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T79 1231-1235 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T80 1270-1274 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T81 1296-1301 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T82 1338-1343 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T83 1358-1363 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T84 1395-1400 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T85 1415-1420 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T86 1624-1627 http://purl.obolibrary.org/obo/PR_000001807 denotes BGR
T87 1647-1652 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T88 1752-1756 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T12 621-623 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T13 681-683 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T14 755-757 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T15 825-827 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T16 903-905 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T17 981-983 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T18 1036-1038 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T19 1065-1067 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T20 1121-1123 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T21 1722-1732 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T43 0-8 Sentence denotes Table 1.
T44 9-50 Sentence denotes List of coronaviruses used in this study.
T45 51-126 Sentence denotes Accession number Name displayed on the tree Name of full-length genome Year
T46 127-203 Sentence denotes AY274119 Human SARS-CoV Tor2 2003 SARS-related coronavirus isolate Tor2 2003
T47 204-264 Sentence denotes AY278488 Human SARS-CoV BJ01 2003 SARS coronavirus BJ01 2003
T48 265-342 Sentence denotes AY278491 SARS coronavirus HKU-39849 2003 SARS coronavirus HKU-39849 2003 2003
T49 343-403 Sentence denotes AY390556 Human SARS-CoV GZ02 2003 SARS coronavirus GZ02 2003
T50 404-460 Sentence denotes AY391777 Human CoV OC43 2003 Human coronavirus OC43 2003
T51 461-550 Sentence denotes AY515512 Paguma SARS CoV HC/SZ/61/03 2003 SARS coronavirus HC/SZ/61/03 (paguma SARS) 2018
T52 551-607 Sentence denotes EF065513 Bat CoV HKU9-1 2006 Bat coronavirus HKU9-1 2006
T53 608-667 Sentence denotes FJ588686 Bat SL-CoV Rs672 2006 Bat SARS CoV Rs672/2006 2006
T54 668-741 Sentence denotes KC881005 Bat SL-CoV RsSHC014 2013 Bat SARS-like coronavirus RsSHC014 2013
T55 742-811 Sentence denotes KC881006 Bat SL-CoV Rs3367 2013 Bat SARS-like coronavirus Rs3367 2013
T56 812-889 Sentence denotes KY417146 Bat SL-CoV Rs4231 2016 Bat SARS-like coronavirus isolate Rs4231 2016
T57 890-967 Sentence denotes KY417149 Bat SL-CoV Rs4255 2016 Bat SARS-like coronavirus isolate Rs4255 2016
T58 968-1051 Sentence denotes MG772933 Bat SL-CoV ZC45 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZC45 2018
T59 1052-1137 Sentence denotes MG772934 Bat SL-CoV ZXC21 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZXC21 2018
T60 1138-1205 Sentence denotes MK211377 Bat CoV YN2018C 2018 Coronavirus BtRs-BetaCoV/YN2018C 2018
T61 1206-1274 Sentence denotes MK211378 Bat CoV YN2018D 2018 Coronavirus BtRs-BetaCoV/YN2018Da 2018
T62 1275-1328 Sentence denotes MN975262 HKU-SZ-005b Human 2019-nCoV HKU-SZ-005b 2020
T63 1329-1385 Sentence denotes NC002645 Human CoV 229E 2000 Human coronavirus 229E 2000
T64 1386-1442 Sentence denotes NC006577 Human CoV HKU1 2004 Human coronavirus HKU1 2004
T65 1443-1499 Sentence denotes NC009019 Bat CoV HKU4-1 2006 Bat coronavirus HKU4-1 2006
T66 1500-1556 Sentence denotes NC009020 Bat CoV HKU5-1 2006 Bat coronavirus HKU5-1 2006
T67 1557-1637 Sentence denotes NC014470 Bat SARS-related CoV BM48-31 2009 Bat coronavirus BM48-31/BGR/2008 2008
T68 1638-1716 Sentence denotes NC019843 Human MERS-CoV 2012 Middle East respiratory syndrome coronavirus 2012
T69 1717-1791 Sentence denotes aOne nucleotide was added within M gene to maintain the sequence in-frame.