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PMC:7067204 / 4893-7103 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
369 1985-1988 Gene denotes Bat Gene:570
370 1928-1931 Gene denotes Bat Gene:570
371 1871-1874 Gene denotes Bat Gene:570
372 1634-1637 Gene denotes Bat Gene:570
373 1566-1569 Gene denotes Bat Gene:570
374 1536-1539 Gene denotes bat Gene:570
375 1480-1483 Gene denotes Bat Gene:570
376 1451-1454 Gene denotes bat Gene:570
377 1396-1399 Gene denotes Bat Gene:570
378 1318-1321 Gene denotes Bat Gene:570
379 1240-1243 Gene denotes Bat Gene:570
380 1170-1173 Gene denotes Bat Gene:570
381 1096-1099 Gene denotes Bat Gene:570
382 1036-1039 Gene denotes Bat Gene:570
383 505-508 Gene denotes the Gene:25085
384 959-963 Gene denotes SARS Gene:6301
385 561-569 Species denotes SARS-CoV Tax:694009
386 580-604 Species denotes SARS-related coronavirus Tax:694009
387 638-646 Species denotes SARS-CoV Tax:694009
388 657-678 Species denotes SARS coronavirus BJ01 Tax:228407
389 693-719 Species denotes SARS coronavirus HKU-39849 Tax:228404
390 725-751 Species denotes SARS coronavirus HKU-39849 Tax:228404
391 771-776 Species denotes Human Tax:9606
392 777-785 Species denotes SARS-CoV Tax:694009
393 796-817 Species denotes SARS coronavirus GZ02 Tax:256753
394 832-837 Species denotes Human Tax:9606
395 838-841 Species denotes CoV Tax:11118
396 852-874 Species denotes Human coronavirus OC43 Tax:31631
397 922-950 Species denotes SARS coronavirus HC/SZ/61/03 Tax:260069
398 979-991 Species denotes Bat CoV HKU9 Tax:694006
399 999-1021 Species denotes Bat coronavirus HKU9-1 Tax:424367
400 1043-1046 Species denotes CoV Tax:11118
401 1058-1081 Species denotes Bat SARS CoV Rs672/2006 Tax:722424
402 1103-1106 Species denotes CoV Tax:11118
403 1121-1155 Species denotes Bat SARS-like coronavirus RsSHC014 Tax:1415851
404 1177-1180 Species denotes CoV Tax:11118
405 1193-1225 Species denotes Bat SARS-like coronavirus Rs3367 Tax:1415834
406 1247-1250 Species denotes CoV Tax:11118
407 1263-1288 Species denotes Bat SARS-like coronavirus Tax:1508227
408 1325-1328 Species denotes CoV Tax:11118
409 1341-1366 Species denotes Bat SARS-like coronavirus Tax:1508227
410 1403-1406 Species denotes CoV Tax:11118
411 1417-1442 Species denotes Bat SARS-like coronavirus Tax:1508227
412 1487-1490 Species denotes CoV Tax:11118
413 1502-1527 Species denotes Bat SARS-like coronavirus Tax:1508227
414 1570-1573 Species denotes CoV Tax:11118
415 1587-1619 Species denotes Coronavirus BtRs-BetaCoV/YN2018C Tax:2591236
416 1638-1641 Species denotes CoV Tax:11118
417 1655-1666 Species denotes Coronavirus Tax:11118
418 1672-1679 Species denotes BetaCoV Tax:694002
419 1715-1720 Species denotes Human Tax:9606
420 1721-1730 Species denotes 2019-nCoV Tax:2697049
421 1757-1762 Species denotes Human Tax:9606
422 1763-1766 Species denotes CoV Tax:11118
423 1777-1799 Species denotes Human coronavirus 229E Tax:11137
424 1814-1828 Species denotes Human CoV HKU1 Tax:290028
425 1834-1856 Species denotes Human coronavirus HKU1 Tax:290028
426 1875-1878 Species denotes CoV Tax:11118
427 1891-1913 Species denotes Bat coronavirus HKU4-1 Tax:424359
428 1932-1935 Species denotes CoV Tax:11118
429 1948-1970 Species denotes Bat coronavirus HKU5-1 Tax:424363
430 1989-2005 Species denotes SARS-related CoV Tax:694009
431 2019-2051 Species denotes Bat coronavirus BM48-31/BGR/2008 Tax:864596
432 2066-2071 Species denotes Human Tax:9606
433 2072-2080 Species denotes MERS-CoV Tax:1335626
434 2086-2130 Species denotes Middle East respiratory syndrome coronavirus Tax:1335626
435 786-790 Species denotes GZ02 Tax:256753
436 905-916 Species denotes HC/SZ/61/03 Tax:260069
437 1047-1057 Species denotes Rs672 2006 Tax:722424
438 1767-1771 Species denotes 229E Tax:11137
439 1879-1885 Species denotes HKU4-1 Tax:424359
440 1936-1942 Species denotes HKU5-1 Tax:424363
441 1694-1706 CellLine denotes MN975262 HKU CVCL:U508
443 436-449 Species denotes coronaviruses Tax:11118
447 2188-2191 Gene denotes the Gene:25085
448 2176-2178 Gene denotes to Gene:6999
449 2136-2151 Chemical denotes aOne nucleotide
461 402-404 Gene denotes as Gene:112935892
462 405-408 Gene denotes the Gene:25085
463 131-134 Gene denotes The Gene:25085
464 16-19 Gene denotes The Gene:25085
465 167-169 Gene denotes of Gene:6688
466 45-47 Gene denotes of Gene:6688
467 48-57 Species denotes 2019-nCoV Tax:2697049
468 213-218 Species denotes human Tax:9606
469 308-313 Species denotes human Tax:9606
470 381-394 Species denotes E coronavirus Tax:28293
471 110-118 CellLine denotes MN975262 CVCL:U508

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T19 29-35 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T20 159-166 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T21 335-339 Body_part denotes palm http://purl.org/sig/ont/fma/fma24920
T22 534-540 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T23 2141-2151 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T24 2171-2175 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T32 561-569 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 580-584 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T34 638-646 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 657-661 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T36 693-697 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T37 725-729 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T38 777-785 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T39 796-800 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T40 896-900 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T41 922-926 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T42 959-963 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T43 1062-1066 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T44 1125-1129 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T45 1197-1201 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T46 1267-1271 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T47 1345-1349 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T48 1421-1425 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T49 1506-1510 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T50 1989-1993 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T61 213-221 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human or
T62 308-313 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T63 315-319 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T64 363-367 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T65 555-560 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T66 632-637 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T67 771-776 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T68 832-837 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T69 852-857 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T70 965-969 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T71 1412-1416 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T72 1451-1454 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T73 1466-1470 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T74 1497-1501 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T75 1536-1539 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T76 1552-1556 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T77 1582-1586 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T78 1620-1624 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T79 1650-1654 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T80 1689-1693 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T81 1715-1720 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T82 1757-1762 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T83 1777-1782 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T84 1814-1819 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T85 1834-1839 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T86 2043-2046 http://purl.obolibrary.org/obo/PR_000001807 denotes BGR
T87 2066-2071 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T88 2171-2175 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T12 1040-1042 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T13 1100-1102 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T14 1174-1176 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T15 1244-1246 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T16 1322-1324 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T17 1400-1402 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T18 1455-1457 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T19 1484-1486 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T20 1540-1542 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T21 2141-2151 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T38 0-15 Sentence denotes Viral sequences
T39 16-109 Sentence denotes The complete genome sequence of 2019-nCoV HKU-SZ-005b was available at GenBank (accession no.
T40 110-130 Sentence denotes MN975262) (Table 1).
T41 131-269 Sentence denotes The representative complete genomes of other related βCoVs strains collected from human or mammals were included for comparative analysis.
T42 270-418 Sentence denotes These included strains collected from human, bats, and Himalayan palm civet between 2003 and 2018, with one 229E coronavirus strain as the outgroup.
T43 419-427 Sentence denotes Table 1.
T44 428-469 Sentence denotes List of coronaviruses used in this study.
T45 470-545 Sentence denotes Accession number Name displayed on the tree Name of full-length genome Year
T46 546-622 Sentence denotes AY274119 Human SARS-CoV Tor2 2003 SARS-related coronavirus isolate Tor2 2003
T47 623-683 Sentence denotes AY278488 Human SARS-CoV BJ01 2003 SARS coronavirus BJ01 2003
T48 684-761 Sentence denotes AY278491 SARS coronavirus HKU-39849 2003 SARS coronavirus HKU-39849 2003 2003
T49 762-822 Sentence denotes AY390556 Human SARS-CoV GZ02 2003 SARS coronavirus GZ02 2003
T50 823-879 Sentence denotes AY391777 Human CoV OC43 2003 Human coronavirus OC43 2003
T51 880-969 Sentence denotes AY515512 Paguma SARS CoV HC/SZ/61/03 2003 SARS coronavirus HC/SZ/61/03 (paguma SARS) 2018
T52 970-1026 Sentence denotes EF065513 Bat CoV HKU9-1 2006 Bat coronavirus HKU9-1 2006
T53 1027-1086 Sentence denotes FJ588686 Bat SL-CoV Rs672 2006 Bat SARS CoV Rs672/2006 2006
T54 1087-1160 Sentence denotes KC881005 Bat SL-CoV RsSHC014 2013 Bat SARS-like coronavirus RsSHC014 2013
T55 1161-1230 Sentence denotes KC881006 Bat SL-CoV Rs3367 2013 Bat SARS-like coronavirus Rs3367 2013
T56 1231-1308 Sentence denotes KY417146 Bat SL-CoV Rs4231 2016 Bat SARS-like coronavirus isolate Rs4231 2016
T57 1309-1386 Sentence denotes KY417149 Bat SL-CoV Rs4255 2016 Bat SARS-like coronavirus isolate Rs4255 2016
T58 1387-1470 Sentence denotes MG772933 Bat SL-CoV ZC45 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZC45 2018
T59 1471-1556 Sentence denotes MG772934 Bat SL-CoV ZXC21 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZXC21 2018
T60 1557-1624 Sentence denotes MK211377 Bat CoV YN2018C 2018 Coronavirus BtRs-BetaCoV/YN2018C 2018
T61 1625-1693 Sentence denotes MK211378 Bat CoV YN2018D 2018 Coronavirus BtRs-BetaCoV/YN2018Da 2018
T62 1694-1747 Sentence denotes MN975262 HKU-SZ-005b Human 2019-nCoV HKU-SZ-005b 2020
T63 1748-1804 Sentence denotes NC002645 Human CoV 229E 2000 Human coronavirus 229E 2000
T64 1805-1861 Sentence denotes NC006577 Human CoV HKU1 2004 Human coronavirus HKU1 2004
T65 1862-1918 Sentence denotes NC009019 Bat CoV HKU4-1 2006 Bat coronavirus HKU4-1 2006
T66 1919-1975 Sentence denotes NC009020 Bat CoV HKU5-1 2006 Bat coronavirus HKU5-1 2006
T67 1976-2056 Sentence denotes NC014470 Bat SARS-related CoV BM48-31 2009 Bat coronavirus BM48-31/BGR/2008 2008
T68 2057-2135 Sentence denotes NC019843 Human MERS-CoV 2012 Middle East respiratory syndrome coronavirus 2012
T69 2136-2210 Sentence denotes aOne nucleotide was added within M gene to maintain the sequence in-frame.