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PMC:7067204 / 213-1697 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
58 664-667 Gene denotes bat Gene:570
59 478-481 Gene denotes bat Gene:570
60 175-177 Gene denotes as Gene:112935892
61 1393-1396 Gene denotes the Gene:25085
62 1360-1363 Gene denotes the Gene:25085
63 1318-1321 Gene denotes the Gene:25085
64 1229-1232 Gene denotes the Gene:25085
65 1132-1135 Gene denotes the Gene:25085
66 1074-1077 Gene denotes the Gene:25085
67 714-717 Gene denotes the Gene:25085
68 660-663 Gene denotes the Gene:25085
69 538-541 Gene denotes The Gene:25085
70 421-424 Gene denotes the Gene:25085
71 230-233 Gene denotes the Gene:25085
72 68-70 Gene denotes to Gene:6999
73 740-745 Gene denotes Spike Gene:43740568
74 579-584 Gene denotes Spike Gene:43740568
75 1096-1100 Gene denotes SARS Gene:6301
76 482-486 Gene denotes SARS Gene:6301
77 945-949 Gene denotes orf8 Gene:43740577
78 1404-1406 Gene denotes of Gene:6688
79 1254-1256 Gene denotes of Gene:6688
80 772-774 Gene denotes of Gene:6688
81 737-739 Gene denotes of Gene:6688
82 657-659 Gene denotes of Gene:6688
83 561-563 Gene denotes of Gene:6688
84 519-521 Gene denotes of Gene:6688
85 432-434 Gene denotes of Gene:6688
86 107-109 Gene denotes of Gene:6688
87 22-24 Gene denotes of Gene:6688
88 139-156 Species denotes novel coronavirus Tax:2697049
89 178-200 Species denotes 2019 novel coronavirus Tax:2697049
90 202-211 Species denotes 2019-nCoV Tax:2697049
91 323-330 Species denotes patient Tax:9606
92 391-402 Species denotes coronavirus Tax:11118
93 435-444 Species denotes 2019-nCoV Tax:2697049
94 528-536 Species denotes SARS-CoV Tax:694009
95 685-703 Species denotes SARS coronaviruses Tax:694009
96 775-784 Species denotes 2019-nCoV Tax:2697049
97 832-858 Species denotes SARS-related coronaviruses Tax:694009
98 1105-1110 Species denotes camel Tax:9838
99 1153-1162 Species denotes 2019-nCoV Tax:2697049
100 1278-1293 Species denotes betacoronavirus Tax:694002
101 34-43 Disease denotes pneumonia MESH:D011014
102 336-355 Disease denotes 2019-nCoV infection MESH:C000657245
103 1474-1483 Disease denotes infection MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 309-315 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T2 403-410 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T3 425-431 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T4 453-463 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T5 801-811 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T6 915-922 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T7 976-983 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T8 998-1003 Body_part denotes helix http://purl.org/sig/ont/fma/fma60992

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 998-1003 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 34-43 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 34-43 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T4 336-355 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T5 346-355 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T6 482-486 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T7 528-536 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T8 685-689 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T9 832-836 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T10 1096-1100 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T11 1474-1483 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T3 0-1 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T4 71-72 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 124-125 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 137-138 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 247-259 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T8 301-302 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 303-308 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T10 321-322 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 445-448 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T12 478-481 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T13 522-527 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T14 576-577 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T15 596-604 http://purl.obolibrary.org/obo/UBERON_0000158 denotes Membrane
T16 664-667 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T17 679-684 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T18 890-891 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 965-966 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 1020-1021 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 1105-1110 http://purl.obolibrary.org/obo/NCBITaxon_9837 denotes camel
T22 1136-1142 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T23 1186-1191 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T24 1276-1277 http://purl.obolibrary.org/obo/CLO_0001021 denotes B

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 453-463 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T4 801-811 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T5 801-806 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T6 807-811 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T7 915-922 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T8 976-983 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T9 992-997 Chemical denotes alpha http://purl.obolibrary.org/obo/CHEBI_30216
T10 1022-1026 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T11 1419-1428 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1060-1068 http://purl.obolibrary.org/obo/GO_0007612 denotes Learning
T2 1364-1376 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T8 0-116 Sentence denotes A mysterious outbreak of atypical pneumonia in late 2019 was traced to a seafood wholesale market in Wuhan of China.
T9 117-260 Sentence denotes Within a few weeks, a novel coronavirus tentatively named as 2019 novel coronavirus (2019-nCoV) was announced by the World Health Organization.
T10 261-411 Sentence denotes We performed bioinformatics analysis on a virus genome from a patient with 2019-nCoV infection and compared it with other related coronavirus genomes.
T11 412-537 Sentence denotes Overall, the genome of 2019-nCoV has 89% nucleotide identity with bat SARS-like-CoVZXC21 and 82% with that of human SARS-CoV.
T12 538-704 Sentence denotes The phylogenetic trees of their orf1a/b, Spike, Envelope, Membrane and Nucleoprotein also clustered closely with those of the bat, civet and human SARS coronaviruses.
T13 705-859 Sentence denotes However, the external subdomain of Spike’s receptor binding domain of 2019-nCoV shares only 40% amino acid identity with other SARS-related coronaviruses.
T14 860-923 Sentence denotes Remarkably, its orf3b encodes a completely novel short protein.
T15 924-1059 Sentence denotes Furthermore, its new orf8 likely encodes a secreted protein with an alpha-helix, following with a beta-sheet(s) containing six strands.
T16 1060-1294 Sentence denotes Learning from the roles of civet in SARS and camel in MERS, hunting for the animal source of 2019-nCoV and its more ancestral virus would be important for understanding the origin and evolution of this novel lineage B betacoronavirus.
T17 1295-1484 Sentence denotes These findings provide the basis for starting further studies on the pathogenesis, and optimizing the design of diagnostic, antiviral and vaccination strategies for this emerging infection.