PMC:7067204 / 19329-19808 JSONTXT

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    LitCovid-PubTator

    {"project":"LitCovid-PubTator","denotations":[{"id":"1160","span":{"begin":4,"end":8},"obj":"Gene"},{"id":"1164","span":{"begin":437,"end":440},"obj":"Gene"},{"id":"1165","span":{"begin":375,"end":378},"obj":"Gene"},{"id":"1166","span":{"begin":310,"end":313},"obj":"Gene"},{"id":"1167","span":{"begin":260,"end":263},"obj":"Gene"},{"id":"1177","span":{"begin":353,"end":356},"obj":"Gene"},{"id":"1178","span":{"begin":183,"end":186},"obj":"Gene"},{"id":"1179","span":{"begin":136,"end":139},"obj":"Gene"},{"id":"1180","span":{"begin":35,"end":38},"obj":"Gene"},{"id":"1181","span":{"begin":0,"end":3},"obj":"Gene"},{"id":"1191","span":{"begin":396,"end":398},"obj":"Gene"},{"id":"1199","span":{"begin":304,"end":308},"obj":"Gene"},{"id":"1200","span":{"begin":108,"end":112},"obj":"Gene"},{"id":"1226","span":{"begin":73,"end":81},"obj":"Species"},{"id":"1227","span":{"begin":120,"end":128},"obj":"Species"},{"id":"1228","span":{"begin":160,"end":168},"obj":"Species"},{"id":"1229","span":{"begin":200,"end":205},"obj":"Species"},{"id":"1230","span":{"begin":206,"end":214},"obj":"Species"},{"id":"1231","span":{"begin":228,"end":236},"obj":"Species"},{"id":"1232","span":{"begin":245,"end":253},"obj":"Species"},{"id":"1233","span":{"begin":264,"end":280},"obj":"Species"},{"id":"1234","span":{"begin":314,"end":317},"obj":"Species"},{"id":"1235","span":{"begin":342,"end":351},"obj":"Species"},{"id":"1236","span":{"begin":379,"end":395},"obj":"Species"},{"id":"1237","span":{"begin":399,"end":408},"obj":"Species"},{"id":"1238","span":{"begin":412,"end":415},"obj":"Species"},{"id":"1239","span":{"begin":441,"end":457},"obj":"Species"},{"id":"1249","span":{"begin":129,"end":133},"obj":"Species"},{"id":"1250","span":{"begin":458,"end":462},"obj":"Species"}],"attributes":[{"id":"A1160","pred":"tao:has_database_id","subj":"1160","obj":"Gene:43740577"},{"id":"A1164","pred":"tao:has_database_id","subj":"1164","obj":"Gene:570"},{"id":"A1165","pred":"tao:has_database_id","subj":"1165","obj":"Gene:570"},{"id":"A1166","pred":"tao:has_database_id","subj":"1166","obj":"Gene:570"},{"id":"A1167","pred":"tao:has_database_id","subj":"1167","obj":"Gene:570"},{"id":"A1177","pred":"tao:has_database_id","subj":"1177","obj":"Gene:25085"},{"id":"A1178","pred":"tao:has_database_id","subj":"1178","obj":"Gene:25085"},{"id":"A1179","pred":"tao:has_database_id","subj":"1179","obj":"Gene:25085"},{"id":"A1180","pred":"tao:has_database_id","subj":"1180","obj":"Gene:25085"},{"id":"A1181","pred":"tao:has_database_id","subj":"1181","obj":"Gene:25085"},{"id":"A1191","pred":"tao:has_database_id","subj":"1191","obj":"Gene:6999"},{"id":"A1199","pred":"tao:has_database_id","subj":"1199","obj":"Gene:43740577"},{"id":"A1200","pred":"tao:has_database_id","subj":"1200","obj":"Gene:43740577"},{"id":"A1226","pred":"tao:has_database_id","subj":"1226","obj":"Tax:694009"},{"id":"A1227","pred":"tao:has_database_id","subj":"1227","obj":"Tax:694009"},{"id":"A1228","pred":"tao:has_database_id","subj":"1228","obj":"Tax:694009"},{"id":"A1229","pred":"tao:has_database_id","subj":"1229","obj":"Tax:9606"},{"id":"A1230","pred":"tao:has_database_id","subj":"1230","obj":"Tax:694009"},{"id":"A1231","pred":"tao:has_database_id","subj":"1231","obj":"Tax:694009"},{"id":"A1232","pred":"tao:has_database_id","subj":"1232","obj":"Tax:694009"},{"id":"A1233","pred":"tao:has_database_id","subj":"1233","obj":"Tax:694009"},{"id":"A1234","pred":"tao:has_database_id","subj":"1234","obj":"Tax:11118"},{"id":"A1235","pred":"tao:has_database_id","subj":"1235","obj":"Tax:2697049"},{"id":"A1236","pred":"tao:has_database_id","subj":"1236","obj":"Tax:694009"},{"id":"A1237","pred":"tao:has_database_id","subj":"1237","obj":"Tax:2697049"},{"id":"A1238","pred":"tao:has_database_id","subj":"1238","obj":"Tax:11118"},{"id":"A1239","pred":"tao:has_database_id","subj":"1239","obj":"Tax:694009"},{"id":"A1249","pred":"tao:has_database_id","subj":"1249","obj":"Tax:256753"},{"id":"A1250","pred":"tao:has_database_id","subj":"1250","obj":"Tax:290028"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"The orf8 protein sequences used in the analysis derived from early phase SARS-CoV that includes full-length orf8 (human SARS-CoV GZ02), the mid- and late-phase SARS-CoV that includes the split orf8b (human SARS-CoV Tor2), civet SARS-CoV (paguma SARS-CoV), two bat SARS-related-CoV containing full-length orf8 (bat-CoV YNLF_31C and YNLF_34C), 2019-nCoV, the other two closest bat SARS-related-CoV to 2019-nCoV SL-CoV ZXC21 and ZC45), and bat SARS-related-CoV HKU3-1 (Figure 5(A))."}

    LitCovid-PD-FMA-UBERON

    {"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T94","span":{"begin":9,"end":16},"obj":"Body_part"}],"attributes":[{"id":"A94","pred":"fma_id","subj":"T94","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"The orf8 protein sequences used in the analysis derived from early phase SARS-CoV that includes full-length orf8 (human SARS-CoV GZ02), the mid- and late-phase SARS-CoV that includes the split orf8b (human SARS-CoV Tor2), civet SARS-CoV (paguma SARS-CoV), two bat SARS-related-CoV containing full-length orf8 (bat-CoV YNLF_31C and YNLF_34C), 2019-nCoV, the other two closest bat SARS-related-CoV to 2019-nCoV SL-CoV ZXC21 and ZC45), and bat SARS-related-CoV HKU3-1 (Figure 5(A))."}

    LitCovid-PD-MONDO

    {"project":"LitCovid-PD-MONDO","denotations":[{"id":"T92","span":{"begin":73,"end":81},"obj":"Disease"},{"id":"T93","span":{"begin":120,"end":128},"obj":"Disease"},{"id":"T94","span":{"begin":160,"end":168},"obj":"Disease"},{"id":"T95","span":{"begin":206,"end":214},"obj":"Disease"},{"id":"T96","span":{"begin":228,"end":236},"obj":"Disease"},{"id":"T97","span":{"begin":245,"end":253},"obj":"Disease"},{"id":"T98","span":{"begin":264,"end":268},"obj":"Disease"},{"id":"T99","span":{"begin":379,"end":383},"obj":"Disease"},{"id":"T100","span":{"begin":441,"end":445},"obj":"Disease"}],"attributes":[{"id":"A92","pred":"mondo_id","subj":"T92","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A93","pred":"mondo_id","subj":"T93","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A94","pred":"mondo_id","subj":"T94","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A95","pred":"mondo_id","subj":"T95","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A96","pred":"mondo_id","subj":"T96","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A97","pred":"mondo_id","subj":"T97","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A98","pred":"mondo_id","subj":"T98","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A99","pred":"mondo_id","subj":"T99","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A100","pred":"mondo_id","subj":"T100","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"The orf8 protein sequences used in the analysis derived from early phase SARS-CoV that includes full-length orf8 (human SARS-CoV GZ02), the mid- and late-phase SARS-CoV that includes the split orf8b (human SARS-CoV Tor2), civet SARS-CoV (paguma SARS-CoV), two bat SARS-related-CoV containing full-length orf8 (bat-CoV YNLF_31C and YNLF_34C), 2019-nCoV, the other two closest bat SARS-related-CoV to 2019-nCoV SL-CoV ZXC21 and ZC45), and bat SARS-related-CoV HKU3-1 (Figure 5(A))."}

    LitCovid-PD-CLO

    {"project":"LitCovid-PD-CLO","denotations":[{"id":"T227","span":{"begin":114,"end":119},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T228","span":{"begin":200,"end":205},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T229","span":{"begin":260,"end":263},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T230","span":{"begin":310,"end":313},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T231","span":{"begin":375,"end":378},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T232","span":{"begin":437,"end":440},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T233","span":{"begin":475,"end":476},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"The orf8 protein sequences used in the analysis derived from early phase SARS-CoV that includes full-length orf8 (human SARS-CoV GZ02), the mid- and late-phase SARS-CoV that includes the split orf8b (human SARS-CoV Tor2), civet SARS-CoV (paguma SARS-CoV), two bat SARS-related-CoV containing full-length orf8 (bat-CoV YNLF_31C and YNLF_34C), 2019-nCoV, the other two closest bat SARS-related-CoV to 2019-nCoV SL-CoV ZXC21 and ZC45), and bat SARS-related-CoV HKU3-1 (Figure 5(A))."}

    LitCovid-PD-CHEBI

    {"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T127","span":{"begin":9,"end":16},"obj":"Chemical"},{"id":"T128","span":{"begin":409,"end":411},"obj":"Chemical"}],"attributes":[{"id":"A127","pred":"chebi_id","subj":"T127","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A128","pred":"chebi_id","subj":"T128","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"}],"text":"The orf8 protein sequences used in the analysis derived from early phase SARS-CoV that includes full-length orf8 (human SARS-CoV GZ02), the mid- and late-phase SARS-CoV that includes the split orf8b (human SARS-CoV Tor2), civet SARS-CoV (paguma SARS-CoV), two bat SARS-related-CoV containing full-length orf8 (bat-CoV YNLF_31C and YNLF_34C), 2019-nCoV, the other two closest bat SARS-related-CoV to 2019-nCoV SL-CoV ZXC21 and ZC45), and bat SARS-related-CoV HKU3-1 (Figure 5(A))."}

    LitCovid-sentences

    {"project":"LitCovid-sentences","denotations":[{"id":"T202","span":{"begin":0,"end":479},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"The orf8 protein sequences used in the analysis derived from early phase SARS-CoV that includes full-length orf8 (human SARS-CoV GZ02), the mid- and late-phase SARS-CoV that includes the split orf8b (human SARS-CoV Tor2), civet SARS-CoV (paguma SARS-CoV), two bat SARS-related-CoV containing full-length orf8 (bat-CoV YNLF_31C and YNLF_34C), 2019-nCoV, the other two closest bat SARS-related-CoV to 2019-nCoV SL-CoV ZXC21 and ZC45), and bat SARS-related-CoV HKU3-1 (Figure 5(A))."}