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PMC:7067204 / 15748-16947 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
804 693-696 Gene denotes the Gene:25085
805 474-477 Gene denotes Tor Gene:6097
806 331-334 Gene denotes bat Gene:570
807 307-310 Gene denotes bat Gene:570
808 286-289 Gene denotes bat Gene:570
809 269-272 Gene denotes bat Gene:570
810 252-255 Gene denotes bat Gene:570
811 1169-1172 Gene denotes the Gene:25085
812 874-877 Gene denotes the Gene:25085
813 808-811 Gene denotes the Gene:25085
814 761-764 Gene denotes the Gene:25085
815 661-664 Gene denotes The Gene:25085
816 133-138 Gene denotes Spike Gene:43740568
817 38-43 Gene denotes Spike Gene:43740568
818 1083-1085 Gene denotes of Gene:6688
819 1030-1032 Gene denotes of Gene:6688
820 819-821 Gene denotes of Gene:6688
821 758-760 Gene denotes of Gene:6688
822 163-165 Gene denotes of Gene:6688
823 130-132 Gene denotes of Gene:6688
824 32-34 Gene denotes of Gene:6688
825 11-13 Gene denotes of Gene:6688
826 166-175 Species denotes 2019-nCoV Tax:2697049
827 217-242 Species denotes bat SARS-like coronavirus Tax:1508227
828 293-296 Species denotes CoV Tax:11118
829 314-317 Species denotes CoV Tax:11118
830 338-341 Species denotes CoV Tax:11118
831 448-469 Species denotes SARS coronavirus GZ02 Tax:256753
832 545-553 Species denotes SARS-CoV Tax:694009
833 1033-1042 Species denotes 2019-nCoV Tax:2697049
834 342-346 Species denotes HKU3 Tax:290028
835 206-214 CellLine denotes MN975262 CVCL:U508

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T76 14-21 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T77 53-57 Body_part denotes head http://purl.org/sig/ont/fma/fma7154
T78 142-152 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T79 765-775 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T80 1086-1096 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T16 53-57 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T72 221-225 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T73 448-452 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T74 545-553 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T177 35-36 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T178 53-57 http://purl.obolibrary.org/obo/UBERON_0000033 denotes head
T179 53-57 http://www.ebi.ac.uk/efo/EFO_0000964 denotes head
T180 58-60 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T181 66-67 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T182 69-71 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T183 139-141 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T184 217-220 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T185 252-255 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T186 269-272 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T187 286-289 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T188 307-310 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T189 331-334 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T190 442-447 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T191 822-828 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T192 829-836 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T193 966-967 http://purl.obolibrary.org/obo/CLO_0001020 denotes A

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T96 14-21 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T97 142-152 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T98 142-147 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T99 148-152 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T100 256-258 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T101 273-275 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T102 290-292 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T103 311-313 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T104 335-337 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T105 765-775 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T106 765-770 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T107 771-775 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T108 829-836 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T109 1086-1096 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T110 1086-1091 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T111 1092-1096 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T172 0-37 Sentence denotes Comparison of protein sequences of A.
T173 38-68 Sentence denotes Spike globular head S1, and B.
T174 69-110 Sentence denotes S1 receptor-binding domain (RBD) subunit.
T175 111-660 Sentence denotes Multiple alignment of Spike S1 amino acid sequences of 2019-nCoV HKU-SZ-005b (accession number MN975262), bat SARS-like coronavirus isolates bat-SL-CoVZXC21, bat-SL-CoVZXC45, bat-SL-CoV-YNLF_31C, bat-SL-CoV-YNLF_34C and bat SL-CoV HKU3-1 (accession number MG772934.1 and MG772933.1, KP886808, KP886809 and DQ022305, respectively), human SARS coronavirus GZ02 and Tor2 (accession number AY390556 and AY274119, respectively) and Paguma SARS-CoV (accession number AY515512) was performed and displayed using CLUSTAL 2.1 and BOXSHADE 3.21, respectively.
T176 661-786 Sentence denotes The black background represents the identity while the grey background represents the similarity of the amino acid sequences.
T177 787-931 Sentence denotes Orange box indicates the region of signal peptide, while green and blue boxes indicate the core domain and receptor binding domain respectively.
T178 932-994 Sentence denotes Sequences of RBD, highlighted in (A) were used for comparison.
T179 995-1147 Sentence denotes External subdomain variable region of 2019-nCoV HKU-SZ-005b was predicted by comparison of amino acid similarity and published structural analysis [17].
T180 1148-1199 Sentence denotes Purple box indicates the external subdomain region.

2_test

Id Subject Object Predicate Lexical cue
31987001-25211075-27754486 1143-1145 25211075 denotes 17

MyTest

Id Subject Object Predicate Lexical cue
31987001-25211075-27754486 1143-1145 25211075 denotes 17