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PMC:7054964 / 5883-7576 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
96 1190-1197 Species denotes patient Tax:9606
97 1296-1304 Species denotes patients Tax:9606
98 1447-1454 Species denotes patient Tax:9606
99 1527-1534 Species denotes patient Tax:9606
100 1342-1347 Disease denotes fever MESH:D005334
101 1349-1361 Disease denotes dry-coughing MESH:D003371
111 95-102 Species denotes Patient Tax:9606
112 207-216 Species denotes 2019-nCoV Tax:2697049
113 410-419 Species denotes 2019-nCoV Tax:2697049
114 995-1004 Species denotes 2019-nCoV Tax:2697049
115 192-201 Disease denotes infection MESH:D007239
116 278-287 Disease denotes pneumonia MESH:D011014
117 325-330 Disease denotes fever MESH:D005334
118 352-364 Disease denotes dry coughing MESH:D003371
119 394-402 Disease denotes infected MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T37 53-58 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T38 484-487 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T39 611-616 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T40 627-630 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T41 796-799 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T42 841-846 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T43 863-868 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T44 918-921 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T45 1241-1244 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T46 1248-1253 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T47 1660-1665 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T21 53-58 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T22 611-616 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T23 841-846 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T24 863-868 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T25 1248-1253 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T26 1660-1665 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T8 192-201 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T9 278-287 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T10 1067-1069 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T72 39-44 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T73 53-58 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T74 53-58 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T75 113-117 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2(A)
T76 420-425 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T77 446-449 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T78 585-587 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T79 611-616 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T80 611-616 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T81 682-683 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T82 698-704 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T83 733-739 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T84 775-776 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T85 806-808 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T86 811-813 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T87 841-846 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T88 841-846 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T89 863-868 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T90 863-868 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T91 874-880 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T92 888-889 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T93 912-917 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T94 933-935 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T95 1005-1010 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T96 1201-1202 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T97 1211-1212 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T98 1235-1240 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T99 1248-1253 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T100 1248-1253 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T101 1365-1373 http://purl.obolibrary.org/obo/CLO_0007225 denotes labelled
T102 1400-1403 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T103 1475-1478 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T104 1584-1585 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T105 1660-1665 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T106 1660-1665 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T5 278-287 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T6 325-330 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T7 352-364 Phenotype denotes dry coughing http://purl.obolibrary.org/obo/HP_0031246
T8 1342-1347 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T9 1349-1361 Phenotype denotes dry-coughing http://purl.obolibrary.org/obo/HP_0031246

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T44 0-94 Sentence denotes Fortunately, two cases with detectable virus both in blood and anal swab cohort were recorded.
T45 95-365 Sentence denotes Patient 1 (Figure 2(A)) was admitted to ICU after enrollment evaluation and was highly suspected infection with 2019-nCoV because of his recent travelling from Wuhan and of confirmed pneumonia by radiographic diagnosis with 5-day fever and 1-day continuous dry coughing.
T46 366-450 Sentence denotes He was then confirmed to be infected by the 2019-nCoV virus on illness day 6 by CDC.
T47 451-603 Sentence denotes High concentrations of the viral RNA were detected in the pharyngeal swabs on illness days 5 (Ct = 17 + 25), 7, 8 (Ct = 25 + 26), and 11 (Ct = 15 + 25).
T48 604-764 Sentence denotes In the blood, no viral RNA was detected on day 5 but the sample on day 6 gave a weak positive signal (Ct = Neg+39), and then the signal was gone again on day 8.
T49 765-847 Sentence denotes On day 9, a low level of viral RNA (Ct = 36 + 41) was detected again in the blood.
T50 848-887 Sentence denotes On day 12, the blood lost signal again.
T51 888-1051 Sentence denotes A high concentration of virus RNA (Ct = 23 + 27) was detected in the anal sample on day 13, on the day the 2019-nCoV virus was not detected in the pharyngeal swab.
T52 1052-1149 Sentence denotes Unfortunately, he was transferred out to another hospital after an emergency expert consultation.
T53 1150-1159 Sentence denotes Figure 2.
T54 1160-1268 Sentence denotes Diagram of viral detection in patient 1 (A) and 2 (B) with both detectable virus RNA in blood and anal swab.
T55 1269-1394 Sentence denotes Illness day represents the patients with clear clinical symptoms such as fever, dry-coughing is labelled over the first line.
T56 1395-1629 Sentence denotes ICU, CDC confirmed, and transfer indicates that the patient is in the ICU ward, CDC confirmation of viral positive, and transfer of patient out from ICU ward to another hospital to receive a higher level of medical care, respectively.
T57 1630-1693 Sentence denotes Ct value from the pharyngeal, blood and the anal swab is shown.