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PMC:7054935 / 883-2247 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
47 72-82 Species denotes SARS-CoV-2 Tax:2697049
48 113-119 Species denotes people Tax:9606
49 142-147 Species denotes human Tax:9606
50 148-158 Species denotes SARS-CoV-2 Tax:2697049
51 218-221 Species denotes CoV Tax:11118
52 290-300 Species denotes SARS-CoV-2 Tax:2697049
53 331-336 Species denotes human Tax:9606
54 337-345 Species denotes SARS-CoV Tax:694009
55 389-392 Species denotes CoV Tax:11118
56 578-583 Species denotes human Tax:9606
57 584-594 Species denotes SARS-CoV-2 Tax:2697049
58 614-617 Species denotes CoV Tax:11118
59 754-758 Species denotes CoVs Tax:11118
60 794-797 Species denotes CoV Tax:11118
61 825-835 Species denotes SARS-CoV-2 Tax:2697049
62 990-1000 Species denotes SARS-CoV-2 Tax:2697049
63 1089-1095 Species denotes humans Tax:9606
64 1125-1129 Species denotes CoVs Tax:11118
65 1154-1159 Species denotes human Tax:9606
66 1160-1170 Species denotes SARS-CoV-2 Tax:2697049
67 1220-1224 Species denotes CoVs Tax:11118
68 1244-1254 Species denotes SARS-CoV-2 Tax:2697049
69 455-457 Chemical denotes nt

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T193 825-835 SP_7 denotes SARS-CoV-2
T192 890-895 NCBITaxon:10239 denotes viral
T210 72-82 SP_7 denotes SARS-CoV-2
T209 113-119 NCBITaxon:9606 denotes people
T208 142-147 SP_6;NCBITaxon:9606 denotes human
T207 148-158 SP_7 denotes SARS-CoV-2
T206 214-217 SP_2 denotes bat
T205 272-280 SO:0000853 denotes homology
T204 290-300 SP_7 denotes SARS-CoV-2
T203 331-336 SP_6;NCBITaxon:9606 denotes human
T202 337-345 SP_10 denotes SARS-CoV
T201 368-378 SP_5 denotes palm civet
T200 379-383 SP_10 denotes SARS
T199 406-414 SO:0000853 denotes homology
T198 499-505 SO:0001026 denotes genome
T197 578-583 SP_6;NCBITaxon:9606 denotes human
T196 584-594 SP_7 denotes SARS-CoV-2
T195 603-606 SP_2 denotes bat
T194 660-666 SO:0001026 denotes genome
T191 941-948 NCBITaxon:species denotes species
T190 950-954 SP_2;NCBITaxon:9397 denotes bats
T189 990-1000 SP_7 denotes SARS-CoV-2
T188 1060-1066 NCBITaxon:33208 denotes animal
T187 1080-1084 SP_2;NCBITaxon:6960 denotes bats
T186 1089-1095 NCBITaxon:9606 denotes humans
T185 1118-1124 NCBITaxon:33208 denotes animal
T184 1154-1159 SP_6;NCBITaxon:9606 denotes human
T183 1160-1164 PR:000014459;SP_7 denotes SARS
T182 1164-1170 SP_7 denotes -CoV-2
T181 1198-1207 SP_1 denotes pangolins
T180 1244-1254 SP_7 denotes SARS-CoV-2

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 368-372 Body_part denotes palm http://purl.org/sig/ont/fma/fma24920
T3 443-453 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T4 455-457 Body_part denotes nt http://purl.org/sig/ont/fma/fma82740
T5 499-505 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T6 551-553 Body_part denotes nt http://purl.org/sig/ont/fma/fma82740
T7 660-666 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T16 72-80 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T17 72-76 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T18 148-156 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T19 148-152 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T20 290-298 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T21 290-294 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T22 337-345 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T23 337-341 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T24 379-383 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T25 584-592 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T26 584-588 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T27 825-833 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T28 825-829 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T29 990-998 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T30 990-994 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T31 1160-1168 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 1160-1164 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T33 1244-1252 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T34 1244-1248 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T8 142-147 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T9 184-185 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 212-213 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 214-217 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T12 331-336 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T13 421-422 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 578-583 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T15 603-606 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T16 670-671 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 852-853 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 910-911 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 930-931 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 950-954 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T21 1031-1032 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T22 1060-1066 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T23 1080-1084 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T24 1089-1095 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T25 1118-1124 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T26 1154-1159 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 443-453 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T3 455-457 Chemical denotes nt http://purl.obolibrary.org/obo/CHEBI_36976
T4 551-553 Chemical denotes nt http://purl.obolibrary.org/obo/CHEBI_36976

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T10 0-107 Sentence denotes Currently, there are speculations, rumours and conspiracy theories that SARS-CoV-2 is of laboratory origin.
T11 108-305 Sentence denotes Some people have alleged that the human SARS-CoV-2 was leaked directly from a laboratory in Wuhan where a bat CoV (RaTG13) was recently reported, which shared ∼96% homology with the SARS-CoV-2 [4].
T12 306-510 Sentence denotes However, as we know, the human SARS-CoV and intermediate host palm civet SARS-like CoV shared 99.8% homology, with a total of 202 single-nucleotide (nt) variations (SNVs) identified across the genome [6].
T13 511-836 Sentence denotes Given that there are greater than 1,100 nt differences between the human SARS-CoV-2 and the bat RaTG13-CoV [4], which are distributed throughout the genome in a naturally occurring pattern following the evolutionary characteristics typical of CoVs, it is highly unlikely that RaTG13 CoV is the immediate source of SARS-CoV-2.
T14 837-1030 Sentence denotes The absence of a logical targeted pattern in the new viral sequences and a close relative in a wildlife species (bats) are the most revealing signs that SARS-CoV-2 evolved by natural evolution.
T15 1031-1171 Sentence denotes A search for an intermediate animal host between bats and humans is needed to identify animal CoVs more closely related to human SARS-CoV-2.
T16 1172-1364 Sentence denotes There is speculation that pangolins might carry CoVs closely related to SARS-CoV-2, but the data to substantiate this is not yet published (https://www.nature.com/articles/d41586-020-00364-2).