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PMC:7054527 / 3498-4973 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
156 1044-1047 Gene denotes bat Gene:570
157 939-942 Gene denotes bat Gene:570
158 778-781 Gene denotes bat Gene:570
159 32-43 Species denotes coronavirus Tax:11118
160 78-84 Species denotes humans Tax:9606
161 95-103 Species denotes SARS-CoV Tax:694009
162 112-167 Species denotes Middle East respiratory syndrome coronavirus (MERS-CoV) Tax:1335626
163 268-276 Species denotes SARS-CoV Tax:694009
164 281-289 Species denotes MERS-CoV Tax:1335626
165 304-309 Species denotes β-CoV Tax:694002
166 316-325 Species denotes 2019-nCoV Tax:2697049
167 364-369 Species denotes β-CoV Tax:694002
168 510-519 Species denotes 2019-nCoV Tax:2697049
169 524-532 Species denotes SARS-CoV Tax:694009
170 548-556 Species denotes MERS-CoV Tax:1335626
171 570-579 Species denotes 2019-nCoV Tax:2697049
172 657-670 Species denotes coronaviruses Tax:11118
173 734-745 Species denotes coronavirus Tax:11118
174 782-801 Species denotes Rhinolophus affinis Tax:59477
175 835-844 Species denotes 2019-nCoV Tax:2697049
176 893-902 Species denotes 2019-nCoV Tax:2697049
177 919-938 Species denotes Rhinolophus affinis Tax:59477
178 1052-1057 Species denotes human Tax:9606
179 1224-1229 Species denotes β-CoV Tax:694002
180 1244-1257 Species denotes coronaviruses Tax:11118
181 1347-1356 Species denotes 2019-nCoV Tax:2697049
182 1463-1472 Species denotes 2019-nCoV Tax:2697049
183 55-74 Disease denotes respiratory disease MESH:D012140
184 237-257 Disease denotes respiratory diseases MESH:D012140
185 605-614 Disease denotes infection MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T17 454-464 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T18 688-694 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T19 695-705 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T20 1303-1309 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T21 1366-1372 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T31 55-74 Disease denotes respiratory disease http://purl.obolibrary.org/obo/MONDO_0005087
T32 95-103 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 95-99 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T34 268-276 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 268-272 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T36 524-532 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T37 524-528 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T38 605-614 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T33 78-84 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T34 260-262 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T35 680-682 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T36 732-733 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 778-781 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T38 1044-1047 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T39 1052-1057 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T40 1059-1060 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T41 1120-1123 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T42 1301-1302 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 454-464 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T4 695-705 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T26 0-263 Sentence denotes Usually, several members of the coronavirus cause mild respiratory disease in humans; however, SARS-CoV and the Middle East respiratory syndrome coronavirus (MERS-CoV) explored in 2002–2003 and in 2012, respectively, caused fatal severe respiratory diseases20–22.
T27 264-315 Sentence denotes The SARS-CoV and MERS-CoV belong to the β-CoV23,24.
T28 316-440 Sentence denotes 2019-nCoV explored in Wuhan also belongs to the β-CoV according to the phylogenetic analysis based on the viral genome10,11.
T29 441-683 Sentence denotes Although the nucleotide sequence similarity is less than 80% between 2019-nCoV and SARS-CoV (about 79%) or MERS-CoV (about 50%), 2019-nCoV can also cause the fetal infection and spread more faster than the two other coronaviruses7,9,11,25–27.
T30 684-945 Sentence denotes The genome nucleotide sequence identity between a coronavirus (BatCoV RaTG13) detected in the bat Rhinolophus affinis from Yunnan Province, China, and 2019-nCoV, was 96.2%, indicating that the natural host of 2019-nCoV may also be the Rhinolophus affinis bat11.
T31 946-1058 Sentence denotes However, the differences may also suggest that there is an or more intermediate hosts between the bat and human.
T32 1059-1232 Sentence denotes A research team from the South China Agricultural University has invested more than 1 000 metagenomic samples from pangolins, and found that 70% pangolins contained β-CoV28.
T33 1233-1475 Sentence denotes One of the coronaviruses they isolated from the pangolins comprised a genome that was very similar with that from 2019-nCoV, and the genome sequence similarity was 99%, indicating that the pangolin may be the intermediate host of 2019-nCoV29.

2_test

Id Subject Object Predicate Lexical cue
32127517-12748314-53455632 257-259 12748314 denotes 20
32127517-12711460-53455632 257-259 12711460 denotes 20
32127517-25033169-53455633 309-311 25033169 denotes 23
32127517-32007143-53455634 670-671 32007143 denotes 7
T53573 257-259 12748314 denotes 20
T20710 257-259 12711460 denotes 20
T89661 309-311 25033169 denotes 23
T97420 670-671 32007143 denotes 7