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PMC:7047374 / 1713-28699 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
42 233-250 Species denotes novel coronavirus Tax:2697049
43 252-261 Species denotes 2019-nCoV Tax:2697049
44 283-330 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
45 332-342 Species denotes SARS-CoV-2 Tax:2697049
46 913-919 Species denotes people Tax:9606
47 114-123 Disease denotes pneumonia MESH:D011014
48 724-733 Disease denotes infection MESH:D007239
49 924-932 Disease denotes infected MESH:D007239
51 1460-1466 Species denotes people Tax:9606
59 1563-1569 Species denotes People Tax:9606
60 1698-1703 Species denotes human Tax:9606
61 1888-1894 Species denotes people Tax:9606
62 1933-1939 Species denotes People Tax:9606
63 2055-2065 Species denotes SARS-CoV-2 Tax:2697049
64 1655-1664 Disease denotes infection MESH:D007239
65 1704-1713 Disease denotes infection MESH:D007239
68 2111-2121 Species denotes SARS-CoV-2 Tax:2697049
69 2148-2156 Disease denotes COVID-19 MESH:C000657245
71 3172-3178 Species denotes People Tax:9606
78 3764-3772 Disease denotes infected MESH:D007239
79 3826-3831 Disease denotes death MESH:D003643
80 4014-4023 Disease denotes infection MESH:D007239
81 4041-4043 Disease denotes ωB
82 4077-4086 Disease denotes infection MESH:D007239
83 4123-4131 Disease denotes infected MESH:D007239
91 4735-4738 Gene denotes βBH Gene:8846
92 4309-4317 Disease denotes infected MESH:D007239
93 4373-4378 Disease denotes death MESH:D003643
94 4530-4539 Disease denotes infection MESH:D007239
95 4557-4559 Disease denotes ωH
96 4594-4603 Disease denotes infection MESH:D007239
97 4640-4648 Disease denotes infected MESH:D007239
107 5218-5220 Gene denotes μP Gene:100129193
108 4765-4775 Species denotes SARS-CoV-2 Tax:2697049
109 4931-4941 Species denotes SARS-CoV-2 Tax:2697049
110 4997-5007 Species denotes SARS-CoV-2 Tax:2697049
111 5131-5137 Species denotes people Tax:9606
112 5164-5170 Species denotes people Tax:9606
113 5122-5130 Disease denotes infected MESH:D007239
114 5155-5163 Disease denotes infected MESH:D007239
115 5359-5361 Disease denotes εW
134 5407-5413 Species denotes people Tax:9606
135 5463-5469 Species denotes people Tax:9606
136 5484-5490 Species denotes people Tax:9606
137 5518-5524 Species denotes people Tax:9606
138 5553-5559 Species denotes people Tax:9606
139 5578-5584 Species denotes people Tax:9606
140 5620-5626 Species denotes people Tax:9606
141 5661-5667 Species denotes people Tax:9606
142 5768-5774 Species denotes people Tax:9606
143 5819-5824 Species denotes human Tax:9606
144 5509-5517 Disease denotes infected MESH:D007239
145 5544-5552 Disease denotes infected MESH:D007239
146 5614-5619 Disease denotes death MESH:D003643
147 5647-5652 Disease denotes death MESH:D003643
148 5825-5834 Disease denotes infection MESH:D007239
149 5861-5864 Disease denotes ω’P MESH:C000656865
150 5963-5972 Disease denotes infection MESH:D007239
151 6007-6015 Disease denotes infected MESH:D007239
153 6260-6266 Species denotes People Tax:9606
156 3521-3527 Species denotes People Tax:9606
157 3571-3580 Disease denotes infection MESH:D007239
176 7240-7242 Gene denotes μP Gene:100129193
177 6563-6569 Species denotes people Tax:9606
178 6644-6650 Species denotes people Tax:9606
179 6752-6758 Species denotes people Tax:9606
180 6786-6792 Species denotes people Tax:9606
181 6919-6925 Species denotes people Tax:9606
182 6983-6989 Species denotes people Tax:9606
183 7412-7418 Species denotes people Tax:9606
184 7029-7032 Gene denotes βBH Gene:8846
185 6577-6582 Disease denotes death MESH:D003643
186 6603-6608 Disease denotes death MESH:D003643
187 6630-6635 Disease denotes death MESH:D003643
188 6653-6655 Disease denotes ωB
189 6688-6690 Disease denotes ωH
190 6761-6764 Disease denotes ω’P MESH:C000656865
191 6906-6915 Disease denotes infection MESH:D007239
192 6970-6979 Disease denotes infection MESH:D007239
193 7394-7403 Disease denotes infection MESH:D007239
195 6417-6423 Species denotes People Tax:9606
197 7505-7511 Species denotes people Tax:9606
199 7559-7569 Species denotes SARS-CoV-2 Tax:2697049
201 8278-8288 Species denotes SARS-CoV-2 Tax:2697049
205 9766-9772 Species denotes people Tax:9606
206 9910-9916 Species denotes people Tax:9606
207 9699-9704 Disease denotes death MESH:D003643
209 10006-10012 Species denotes people Tax:9606
211 12074-12084 Species denotes SARS-CoV-2 Tax:2697049
215 12175-12185 Species denotes SARS-CoV-2 Tax:2697049
216 12238-12258 Disease denotes secondary infections MESH:D060085
217 12297-12305 Disease denotes infected MESH:D007239
219 12834-12837 Disease denotes ω’P MESH:C000656865
221 13113-13121 Species denotes patients Tax:9606
223 13373-13382 Disease denotes infection MESH:D007239
227 13533-13542 Disease denotes infection MESH:D007239
228 13597-13606 Disease denotes infection MESH:D007239
229 13641-13650 Disease denotes infection MESH:D007239
234 14039-14045 Species denotes people Tax:9606
235 14190-14196 Species denotes people Tax:9606
236 14637-14643 Species denotes people Tax:9606
237 14850-14856 Species denotes people Tax:9606
239 15142-15152 Species denotes SARS-CoV-2 Tax:2697049
244 15450-15455 Species denotes human Tax:9606
245 15442-15445 Disease denotes ω’P MESH:C000656865
246 15456-15465 Disease denotes infection MESH:D007239
247 15477-15480 Disease denotes ω’P MESH:C000656865
251 21764-21774 Species denotes SARS-CoV-2 Tax:2697049
252 21981-22001 Disease denotes secondary infections MESH:D060085
253 22040-22048 Disease denotes infected MESH:D007239
259 22302-22312 Species denotes SARS-CoV-2 Tax:2697049
260 22468-22478 Species denotes SARS-CoV-2 Tax:2697049
261 22554-22564 Species denotes SARS-CoV-2 Tax:2697049
262 22638-22648 Species denotes SARS-CoV-2 Tax:2697049
263 23135-23145 Species denotes SARS-CoV-2 Tax:2697049
272 24079-24084 Species denotes human Tax:9606
273 24320-24330 Species denotes SARS-CoV-2 Tax:2697049
274 23584-23617 Disease denotes severe acute respiratory syndrome MESH:D045169
275 23972-23976 Disease denotes MERS MESH:D018352
276 24035-24039 Disease denotes MERS MESH:D018352
277 24178-24182 Disease denotes MERS MESH:D018352
278 24352-24356 Disease denotes MERS MESH:D018352
279 24419-24423 Disease denotes MERS MESH:D018352
288 25211-25221 Species denotes SARS-CoV-2 Tax:2697049
289 25336-25345 Disease denotes infection MESH:D007239
290 25382-25391 Disease denotes infection MESH:D007239
291 25442-25451 Disease denotes infection MESH:D007239
292 25484-25493 Disease denotes infection MESH:D007239
293 25528-25532 Disease denotes MERS MESH:D018352
294 25591-25600 Disease denotes infection MESH:D007239
295 25604-25608 Disease denotes MERS MESH:D018352
300 26592-26602 Species denotes SARS-CoV-2 Tax:2697049
301 26832-26842 Species denotes SARS-CoV-2 Tax:2697049
302 26624-26628 Disease denotes MERS MESH:D018352
303 26691-26695 Disease denotes MERS MESH:D018352

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 3708-3720 Body_part denotes compartments http://purl.org/sig/ont/fma/fma76577
T2 4251-4263 Body_part denotes compartments http://purl.org/sig/ont/fma/fma76577
T3 5334-5345 Body_part denotes compartment http://purl.org/sig/ont/fma/fma76577
T4 5437-5449 Body_part denotes compartments http://purl.org/sig/ont/fma/fma76577
T5 13853-13857 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T6 14066-14070 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T7 15159-15162 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T8 16372-16386 Body_part denotes right],{V}^{-1 http://purl.org/sig/ont/fma/fma8661
T9 16638-16641 Body_part denotes V−1 http://purl.org/sig/ont/fma/fma13444|http://purl.org/sig/ont/fma/fma68614
T11 19169-19175 Body_part denotes V}^{-1 http://purl.org/sig/ont/fma/fma13444|http://purl.org/sig/ont/fma/fma68614
T13 19742-19748 Body_part denotes V}^{-1 http://purl.org/sig/ont/fma/fma13444|http://purl.org/sig/ont/fma/fma68614
T15 26342-26346 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 26342-26346 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T14 114-123 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T15 283-330 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T16 283-316 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T17 332-340 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T18 332-336 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T19 724-733 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T20 1655-1664 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T21 1704-1713 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T22 2055-2063 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T23 2055-2059 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T24 2111-2119 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T25 2111-2115 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T26 2148-2156 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 3025-3027 Disease denotes R2 http://purl.obolibrary.org/obo/MONDO_0019903
T28 3142-3144 Disease denotes R2 http://purl.obolibrary.org/obo/MONDO_0019903
T29 3571-3580 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T30 3759-3761 Disease denotes EB http://purl.obolibrary.org/obo/MONDO_0006541
T31 3802-3804 Disease denotes RB http://purl.obolibrary.org/obo/MONDO_0008380
T32 3904-3906 Disease denotes NB http://purl.obolibrary.org/obo/MONDO_0005072
T33 3947-3949 Disease denotes NB http://purl.obolibrary.org/obo/MONDO_0005072
T34 4014-4023 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T35 4052-4062 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T36 4077-4086 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T37 4530-4539 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T38 4568-4578 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T39 4594-4603 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T40 4736-4738 Disease denotes BH http://purl.obolibrary.org/obo/MONDO_0010873
T41 4765-4773 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T42 4765-4769 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T43 4931-4939 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T44 4931-4935 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T45 4997-5005 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T46 4997-5001 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T47 5492-5494 Disease denotes EP http://purl.obolibrary.org/obo/MONDO_0002754
T48 5825-5834 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T49 5870-5880 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T50 5963-5972 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T51 6802-6812 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T52 6837-6847 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T53 6873-6883 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T54 6906-6915 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T55 6936-6946 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T56 6970-6979 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T57 7030-7032 Disease denotes BH http://purl.obolibrary.org/obo/MONDO_0010873
T58 7394-7403 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T59 7559-7567 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T60 7559-7563 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T61 8278-8286 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T62 8278-8282 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T63 9553-9555 Disease denotes EP http://purl.obolibrary.org/obo/MONDO_0002754
T64 9593-9595 Disease denotes EP http://purl.obolibrary.org/obo/MONDO_0002754
T65 9616-9620 Disease denotes P′AP http://purl.obolibrary.org/obo/MONDO_0001437|http://purl.obolibrary.org/obo/MONDO_0012579
T67 9636-9640 Disease denotes P′AP http://purl.obolibrary.org/obo/MONDO_0001437|http://purl.obolibrary.org/obo/MONDO_0012579
T69 12074-12082 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T70 12074-12078 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T71 12175-12183 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T72 12175-12179 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T73 12248-12258 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T74 13247-13257 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T75 13373-13382 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T76 13533-13542 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T77 13597-13606 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T78 13641-13650 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T79 13693-13702 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T80 15142-15150 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T81 15142-15146 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T82 15456-15465 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T83 21764-21772 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T84 21764-21768 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T85 21787-21789 Disease denotes R2 http://purl.obolibrary.org/obo/MONDO_0019903
T86 21991-22001 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T87 22302-22310 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T88 22302-22306 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T89 22468-22476 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T90 22468-22472 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T91 22554-22562 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T92 22554-22558 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T93 22638-22646 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T94 22638-22642 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T95 23135-23143 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T96 23135-23139 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T97 23584-23617 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T98 23619-23623 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T99 23718-23722 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T100 23886-23890 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T101 23997-24001 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T102 24320-24328 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T103 24320-24324 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T104 24398-24402 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T105 25211-25219 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T106 25211-25215 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T107 25336-25345 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T108 25382-25391 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T109 25442-25451 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T110 25484-25493 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T111 25537-25541 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T112 25591-25600 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T113 25613-25617 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T114 26592-26600 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T115 26592-26596 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T116 26670-26674 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T117 26832-26840 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T118 26832-26836 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T18 49-61 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T19 231-232 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 386-393 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Viruses
T21 397-399 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T22 448-453 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T23 519-524 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T24 534-537 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T25 578-583 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T26 601-602 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 662-666 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3, 4
T28 983-984 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 1076-1081 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T30 1113-1121 http://purl.obolibrary.org/obo/CLO_0009985 denotes focusing
T31 1173-1180 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T32 1395-1398 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T33 1540-1541 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 1542-1546 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes Bats
T35 1685-1689 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T36 1698-1703 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T37 1725-1729 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes Bats
T38 1807-1815 http://purl.obolibrary.org/obo/CLO_0009985 denotes focusing
T39 2202-2203 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 2245-2247 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T41 2245-2247 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T42 2372-2374 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T43 3103-3105 http://purl.obolibrary.org/obo/CLO_0009877 denotes NY
T44 3151-3155 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes Bats
T45 3317-3322 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T46 3345-3349 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T47 3409-3416 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T48 3514-3519 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T49 3680-3684 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T50 3734-3738 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T51 3753-3757 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T52 3759-3761 http://purl.obolibrary.org/obo/CLO_0002867 denotes EB
T53 3773-3777 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T54 3796-3800 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T55 3840-3844 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T56 3868-3870 http://purl.obolibrary.org/obo/PR_000010213 denotes mB
T57 3936-3940 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T58 3979-3983 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T59 4010-4013 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T60 4042-4043 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T61 4073-4076 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T62 4105-4106 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T63 4210-4211 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T64 4349-4351 http://purl.obolibrary.org/obo/CLO_0008812 denotes RH
T65 4416-4418 http://purl.obolibrary.org/obo/CLO_0007706 denotes mH
T66 4901-4902 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T67 5188-5193 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T68 5270-5271 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69 5293-5298 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T70 5349-5350 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T71 5396-5401 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T72 5561-5563 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T73 5684-5686 http://purl.obolibrary.org/obo/CLO_0008192 denotes nP
T74 5722-5724 http://purl.obolibrary.org/obo/CLO_0008192 denotes nP
T75 5727-5729 http://purl.obolibrary.org/obo/CLO_0008192 denotes NP
T76 5736-5738 http://purl.obolibrary.org/obo/CLO_0008192 denotes NP
T77 5819-5824 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T78 5898-5900 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T79 6171-6173 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T80 6239-6243 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes Bats
T81 6396-6400 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes Bats
T82 6490-6494 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T83 6532-6534 http://purl.obolibrary.org/obo/CLO_0008192 denotes nP
T84 6570-6572 http://purl.obolibrary.org/obo/PR_000010213 denotes mB
T85 6591-6595 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T86 6596-6598 http://purl.obolibrary.org/obo/CLO_0007706 denotes mH
T87 6654-6655 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T88 6681-6685 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T89 6796-6797 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T90 6823-6827 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T91 6991-6992 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T92 7185-7186 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T93 7317-7319 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T94 7349-7354 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T95 7461-7463 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T96 7613-7614 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T97 7711-7715 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes Bats
T98 8830-8831 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T99 8926-8927 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T100 9179-9182 http://www.ebi.ac.uk/efo/EFO_0000265 denotes d{A
T101 9269-9270 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T102 9346-9347 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T103 9421-9422 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T104 9508-9510 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T105 9530-9532 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T106 9618-9620 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T107 9638-9640 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T108 9735-9736 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T109 9879-9881 http://purl.obolibrary.org/obo/CLO_0008192 denotes nP
T110 10017-10024 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T111 10491-10492 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T112 10619-10620 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T113 10654-10655 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T114 10741-10743 http://purl.obolibrary.org/obo/CLO_0001547 denotes aP
T115 10878-10880 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T116 11270-11271 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T117 11301-11302 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T118 11314-11315 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T119 11348-11349 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T120 11379-11380 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T121 11392-11393 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T122 11605-11608 http://www.ebi.ac.uk/efo/EFO_0000265 denotes d{a
T123 11695-11696 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T124 11771-11772 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T125 11831-11832 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T126 11897-11899 http://purl.obolibrary.org/obo/CLO_0008192 denotes nP
T127 11913-11915 http://purl.obolibrary.org/obo/CLO_0001547 denotes aP
T128 11935-11937 http://purl.obolibrary.org/obo/CLO_0001547 denotes aP
T129 12023-12025 http://purl.obolibrary.org/obo/CLO_0001547 denotes aP
T130 12288-12289 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T131 12540-12542 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T132 12857-12858 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T133 12927-12928 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 13110-13112 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T135 13180-13181 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 13390-13395 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T137 13704-13706 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T138 13755-13757 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T139 13832-13835 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T140 14009-14010 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T141 14055-14061 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T142 14589-14591 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T143 14614-14618 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T144 14694-14696 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T145 14919-14921 http://purl.obolibrary.org/obo/CLO_0008192 denotes nP
T146 15098-15103 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T147 15163-15168 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T148 15225-15226 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T149 15264-15265 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T150 15450-15455 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T151 16451-16452 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T152 16489-16490 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T153 16538-16539 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T154 16640-16643 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1=1
T155 16958-16959 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T156 17083-17084 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T157 17368-17369 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T158 17486-17487 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T159 19235-19236 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T160 19730-19733 http://purl.obolibrary.org/obo/CLO_0051142 denotes rho
T161 20788-20789 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T162 20973-20974 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T163 21158-21159 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T164 21338-21339 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T165 21555-21557 http://purl.obolibrary.org/obo/CLO_0008285 denotes P1
T166 21587-21590 http://purl.obolibrary.org/obo/CLO_0008285 denotes P'1
T167 21587-21590 http://purl.obolibrary.org/obo/CLO_0008286 denotes P'1
T168 21622-21624 http://purl.obolibrary.org/obo/CLO_0008285 denotes p1
T169 21622-21624 http://purl.obolibrary.org/obo/CLO_0008286 denotes p1
T170 21654-21657 http://purl.obolibrary.org/obo/CLO_0008285 denotes P'1
T171 21654-21657 http://purl.obolibrary.org/obo/CLO_0008286 denotes P'1
T172 22031-22032 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T173 22521-22522 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T174 22758-22760 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T175 22758-22760 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T176 23446-23447 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T177 23671-23673 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T178 24079-24084 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T179 24187-24188 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T180 24280-24282 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T181 24497-24502 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T182 25787-25792 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T183 26012-26020 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T184 26144-26149 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T185 26491-26496 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T186 26732-26741 http://purl.obolibrary.org/obo/BFO_0000030 denotes objective
T187 26771-26772 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T188 26906-26907 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 1941-1943 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419
T4 2008-2010 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419
T5 2245-2247 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T6 3103-3105 Chemical denotes NY http://purl.obolibrary.org/obo/CHEBI_73427
T7 3759-3761 Chemical denotes EB http://purl.obolibrary.org/obo/CHEBI_53197
T8 4284-4286 Chemical denotes SH http://purl.obolibrary.org/obo/CHEBI_29312|http://purl.obolibrary.org/obo/CHEBI_73651
T10 4325-4327 Chemical denotes IH http://purl.obolibrary.org/obo/CHEBI_73520
T11 4349-4351 Chemical denotes RH http://purl.obolibrary.org/obo/CHEBI_18310
T12 4452-4454 Chemical denotes NH http://purl.obolibrary.org/obo/CHEBI_29339|http://purl.obolibrary.org/obo/CHEBI_73424
T14 4461-4463 Chemical denotes NH http://purl.obolibrary.org/obo/CHEBI_29339|http://purl.obolibrary.org/obo/CHEBI_73424
T16 4629-4631 Chemical denotes SH http://purl.obolibrary.org/obo/CHEBI_29312|http://purl.obolibrary.org/obo/CHEBI_73651
T18 4688-4690 Chemical denotes IH http://purl.obolibrary.org/obo/CHEBI_73520
T19 4963-4965 Chemical denotes IH http://purl.obolibrary.org/obo/CHEBI_73520
T20 4966-4968 Chemical denotes NH http://purl.obolibrary.org/obo/CHEBI_29339|http://purl.obolibrary.org/obo/CHEBI_73424
T22 5046-5048 Chemical denotes NH http://purl.obolibrary.org/obo/CHEBI_29339|http://purl.obolibrary.org/obo/CHEBI_73424
T24 5055-5057 Chemical denotes NH http://purl.obolibrary.org/obo/CHEBI_29339|http://purl.obolibrary.org/obo/CHEBI_73424
T26 5471-5473 Chemical denotes SP http://purl.obolibrary.org/obo/CHEBI_74820
T27 5492-5494 Chemical denotes EP http://purl.obolibrary.org/obo/CHEBI_73508
T28 5526-5528 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076
T29 5561-5563 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686
T32 5586-5588 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419
T33 5727-5729 Chemical denotes NP http://purl.obolibrary.org/obo/CHEBI_50803|http://purl.obolibrary.org/obo/CHEBI_53793|http://purl.obolibrary.org/obo/CHEBI_73425
T36 5736-5738 Chemical denotes NP http://purl.obolibrary.org/obo/CHEBI_50803|http://purl.obolibrary.org/obo/CHEBI_53793|http://purl.obolibrary.org/obo/CHEBI_73425
T39 5891-5893 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076
T40 5898-5900 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686
T43 5996-5998 Chemical denotes SP http://purl.obolibrary.org/obo/CHEBI_74820
T44 6054-6056 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076
T45 6171-6173 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686
T48 6194-6196 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076
T49 7066-7068 Chemical denotes SH http://purl.obolibrary.org/obo/CHEBI_29312|http://purl.obolibrary.org/obo/CHEBI_73651
T51 7099-7101 Chemical denotes IH http://purl.obolibrary.org/obo/CHEBI_73520
T52 7105-7107 Chemical denotes SH http://purl.obolibrary.org/obo/CHEBI_29312|http://purl.obolibrary.org/obo/CHEBI_73651
T54 7138-7140 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076
T55 7144-7146 Chemical denotes SP http://purl.obolibrary.org/obo/CHEBI_74820
T56 7182-7184 Chemical denotes SP http://purl.obolibrary.org/obo/CHEBI_74820
T57 7274-7276 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076
T58 7317-7319 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686
T61 7461-7463 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686
T64 7475-7477 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076
T65 8415-8417 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419
T66 8796-8800 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T67 8844-8848 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T68 8892-8896 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T69 8940-8944 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T70 9130-9135 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T71 9237-9242 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T72 9311-9316 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T73 9327-9332 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T74 9508-9510 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686
T77 9530-9532 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686
T80 9544-9547 Chemical denotes PEP http://purl.obolibrary.org/obo/CHEBI_18021|http://purl.obolibrary.org/obo/CHEBI_44897
T82 9553-9555 Chemical denotes EP http://purl.obolibrary.org/obo/CHEBI_73508
T83 9571-9574 Chemical denotes PEP http://purl.obolibrary.org/obo/CHEBI_18021|http://purl.obolibrary.org/obo/CHEBI_44897
T85 9593-9595 Chemical denotes EP http://purl.obolibrary.org/obo/CHEBI_73508
T86 9611-9614 Chemical denotes PIP http://purl.obolibrary.org/obo/CHEBI_16500
T87 9618-9620 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686
T90 9631-9634 Chemical denotes PIP http://purl.obolibrary.org/obo/CHEBI_16500
T91 9638-9640 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686
T94 10626-10630 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T95 10672-10676 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T96 10728-10732 Chemical denotes EPNP http://purl.obolibrary.org/obo/CHEBI_508
T97 10733-10735 Chemical denotes iP http://purl.obolibrary.org/obo/CHEBI_17660
T98 10762-10765 Chemical denotes PNP http://purl.obolibrary.org/obo/CHEBI_16836
T99 10778-10781 Chemical denotes PNP http://purl.obolibrary.org/obo/CHEBI_16836
T100 10878-10880 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686
T103 10893-10895 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076
T104 10912-10914 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419
T105 11568-11573 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T106 11663-11668 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T107 11736-11741 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T108 11752-11757 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T109 12036-12038 Chemical denotes iP http://purl.obolibrary.org/obo/CHEBI_17660
T110 12098-12100 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419
T111 12491-12493 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419
T112 13755-13757 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686
T115 13770-13772 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076
T116 15508-15510 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419
T117 16207-16211 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T118 16242-16246 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T119 16284-16288 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T120 17044-17049 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T121 17437-17442 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T122 17860-17865 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T123 17977-17982 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T124 18366-18371 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T125 18724-18729 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T126 18890-18892 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419
T127 19204-19208 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T128 19239-19243 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T129 19280-19284 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T130 19413-19415 Chemical denotes FV http://purl.obolibrary.org/obo/CHEBI_73638
T131 19759-19763 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T132 19870-19875 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T133 19895-19899 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T134 19996-20001 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T135 20032-20036 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T136 20147-20152 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T137 20183-20187 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T138 20292-20297 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T139 20358-20360 Chemical denotes FV http://purl.obolibrary.org/obo/CHEBI_73638
T140 20484-20486 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419
T141 20942-20947 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T142 21123-21128 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T143 21314-21319 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T144 21491-21496 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T145 21555-21557 Chemical denotes P1 http://purl.obolibrary.org/obo/CHEBI_60949
T146 21727-21729 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419
T147 22147-22149 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419
T148 22196-22198 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419
T149 22758-22760 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T150 24596-24598 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 1206-1218 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T3 1275-1281 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T4 22804-22810 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T5 22970-22976 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T6 24999-25011 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 114-123 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T15 0-10 Sentence denotes Background
T16 11-494 Sentence denotes On 31 December 2019, the World Health Organization (WHO) China Country Office was informed of cases of pneumonia of unknown etiology (unknown cause) detected in Wuhan City, Hubei Province of China, and WHO reported that a novel coronavirus (2019-nCoV), which was named as severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) by International Committee on Taxonomy of Viruses on 11 February, 2020, was identified as the causative virus by Chinese authorities on 7 January [1].
T17 495-668 Sentence denotes It is reported that the virus might be bat origin [2], and the transmission of the virus might related to a seafood market (Huanan Seafood Wholesale Market) exposure [3, 4].
T18 669-768 Sentence denotes The genetic features and some clinical findings of the infection have been reported recently [4–6].
T19 769-853 Sentence denotes Potentials for international spread via commercial air travel had been assessed [7].
T20 854-947 Sentence denotes Public health concerns are being paid globally on how many people are infected and suspected.
T21 948-1082 Sentence denotes Therefore, it is urgent to develop a mathematical model to estimate the transmissibility and dynamic of the transmission of the virus.
T22 1083-1155 Sentence denotes There were several researches focusing on mathematical modelling [3, 8].
T23 1156-1381 Sentence denotes These researches focused on calculating the basic reproduction number (R0) by using the serial intervals and intrinsic growth rate [3, 9, 10], or using ordinary differential equations and Markov Chain Monte Carlo methods [8].
T24 1382-1511 Sentence denotes However, the bat origin and the transmission route form the seafood market to people were not considered in the published models.
T25 1512-1714 Sentence denotes In this study, we developed a Bats-Hosts-Reservoir-People (BHRP) transmission network model for simulating the potential transmission from the infection source (probably be bats) to the human infection.
T26 1715-2066 Sentence denotes Since the Bats-Hosts-Reservoir network was hard to explore clearly and public concerns were focusing on the transmission from Huanan Seafood Wholesale Market (reservoir) to people, we simplified the model as Reservoir-People (RP) transmission network model, and R0 was calculated based on the RP model to assess the transmissibility of the SARS-CoV-2.
T27 2068-2075 Sentence denotes Methods
T28 2077-2088 Sentence denotes Data source
T29 2089-2229 Sentence denotes The reported cases of SARS-CoV-2, which have been named as COVID-19, were collected for the modelling study from a published literature [3].
T30 2230-2376 Sentence denotes As reported by Li et al. [3], the onset date of the first case was on 7 December, 2020, and the seafood market was closed on 1 January, 2020 [11].
T31 2377-2505 Sentence denotes The epidemic curve from 7 December, 2019 to 1 January, 2020 was collected for our study, and the simulation time step was 1 day.
T32 2507-2550 Sentence denotes Simulation methods and statistical analysis
T33 2551-2663 Sentence denotes Berkeley Madonna 8.3.18 (developed by Robert Macey and George Oster of the University of California at Berkeley.
T34 2664-2693 Sentence denotes Copyright©1993–2001 Robert I.
T35 2694-2711 Sentence denotes Macey & George F.
T36 2712-2754 Sentence denotes Oster) was employed for the curve fitting.
T37 2755-2855 Sentence denotes The fourth-order Runge–Kutta method, with tolerance set at 0.001, was used to perform curve fitting.
T38 2856-2990 Sentence denotes While the curve fitting is in progress, Berkeley Madonna displays the root mean square deviation between the data and best run so far.
T39 2991-3072 Sentence denotes The coefficient of determination (R2) was employed to assess the goodness-of-fit.
T40 3073-3145 Sentence denotes SPSS 13.0 (IBM Corp., Armonk, NY, USA) was employed to calculate the R2.
T41 3147-3212 Sentence denotes The Bats-Hosts-Reservoir-People (BHRP) transmission network model
T42 3213-3296 Sentence denotes The BHRP transmission network model was posted to bioRxiv on 19 January, 2020 [12].
T43 3297-3418 Sentence denotes We assumed that the virus transmitted among the bats, and then transmitted to unknown hosts (probably some wild animals).
T44 3419-3520 Sentence denotes The hosts were hunted and sent to the seafood market which was defined as the reservoir of the virus.
T45 3521-3590 Sentence denotes People exposed to the market got the risks of the infection (Fig. 1).
T46 3591-3675 Sentence denotes The BHRP transmission network model was based on the following assumptions or facts:
T47 3676-3806 Sentence denotes The bats were divided into four compartments: susceptible bats (SB), exposed bats (EB), infected bats (IB), and removed bats (RB).
T48 3807-3871 Sentence denotes The birth rate and death rate of bats were defined as nB and mB.
T49 3872-3984 Sentence denotes In this model, we set ɅB = nB × NB as the number of the newborn bats where NB refer to the total number of bats.
T50 3985-4107 Sentence denotes The incubation period of bat infection was defined as 1/ωB and the infectious period of bat infection was defined as 1/γB.
T51 4108-4212 Sentence denotes The SB will be infected through sufficient contact with IB, and the transmission rate was defined as βB.
T52 4213-4353 Sentence denotes The hosts were also divided into four compartments: susceptible hosts (SH), exposed hosts (EH), infected hosts (IH), and removed hosts (RH).
T53 4354-4419 Sentence denotes The birth rate and death rate of hosts were defined as nH and mH.
T54 4420-4499 Sentence denotes In this model, we set ɅH = nH × NH where NH refer to the total number of hosts.
T55 4500-4624 Sentence denotes The incubation period of host infection was defined as 1/ωH and the infectious period of host infection was defined as 1/γH.
T56 4625-4760 Sentence denotes The SH will be infected through sufficient contact with IB and IH, and the transmission rates were defined as βBH and βH, respectively.
T57 4761-4827 Sentence denotes The SARS-CoV-2 in reservoir (the seafood market) was denoted as W.
T58 4828-5088 Sentence denotes We assumed that the retail purchases rate of the hosts in the market was a, and that the prevalence of SARS-CoV-2 in the purchases was IH/NH, therefore, the rate of the SARS-CoV-2 in W imported form the hosts was aWIH/NH where NH was the total number of hosts.
T59 5089-5288 Sentence denotes We also assumed that symptomatic infected people and asymptomatic infected people could export the virus into W with the rate of μP and μ’P, although this assumption might occur in a low probability.
T60 5289-5402 Sentence denotes The virus in W will subsequently leave the W compartment at a rate of εW, where 1/ε is the lifetime of the virus.
T61 5403-5627 Sentence denotes The people were divided into five compartments: susceptible people (SP), exposed people (EP), symptomatic infected people (IP), asymptomatic infected people (AP), and removed people (RP) including recovered and death people.
T62 5628-5694 Sentence denotes The birth rate and death rate of people were defined as nP and mP.
T63 5695-5775 Sentence denotes In this model, we set ɅP = nP × NP where NP refer to the total number of people.
T64 5776-5865 Sentence denotes The incubation period and latent period of human infection was defined as 1/ωP and 1/ω’P.
T65 5866-5931 Sentence denotes The infectious period of IP and AP was defined as 1/γP and 1/γ’P.
T66 5932-5991 Sentence denotes The proportion of asymptomatic infection was defined as δP.
T67 5992-6125 Sentence denotes The SP will be infected through sufficient contact with W and IP, and the transmission rates were defined as βW and βP, respectively.
T68 6126-6214 Sentence denotes We also assumed that the transmissibility of AP was κ times that of IP, where 0 ≤ κ ≤ 1.
T69 6215-6293 Sentence denotes Fig. 1 Flowchart of the Bats-Hosts-Reservoir-People transmission network model
T70 6294-6349 Sentence denotes The parameters of the BHRP model were shown in Table 1.
T71 6350-6436 Sentence denotes Table 1 Definition of those parameters in the Bats-Hosts-Reservoir-People (BHRP) model
T72 6437-6458 Sentence denotes Parameter Description
T73 6459-6494 Sentence denotes nB The birth rate parameter of bats
T74 6495-6531 Sentence denotes nH The birth rate parameter of hosts
T75 6532-6569 Sentence denotes nP The birth rate parameter of people
T76 6570-6595 Sentence denotes mB The death rate of bats
T77 6596-6622 Sentence denotes mH The death rate of hosts
T78 6623-6650 Sentence denotes mP The death rate of people
T79 6651-6685 Sentence denotes 1/ωB The incubation period of bats
T80 6686-6721 Sentence denotes 1/ωH The incubation period of hosts
T81 6722-6758 Sentence denotes 1/ωP The incubation period of people
T82 6759-6792 Sentence denotes 1/ω’P The latent period of people
T83 6793-6827 Sentence denotes 1/γB The infectious period of bats
T84 6828-6863 Sentence denotes 1/γH The infectious period of hosts
T85 6864-6925 Sentence denotes 1/γP The infectious period of symptomatic infection of people
T86 6926-6989 Sentence denotes 1/γ’P The infectious period of asymptomatic infection of people
T87 6990-7028 Sentence denotes βB The transmission rate from IB to SB
T88 7029-7068 Sentence denotes βBH The transmission rate from IB to SH
T89 7069-7107 Sentence denotes βH The transmission rate from IH to SH
T90 7108-7146 Sentence denotes βP The transmission rate from IP to SP
T91 7147-7184 Sentence denotes βW The transmission rate from W to SP
T92 7185-7239 Sentence denotes a The retail purchases rate of the hosts in the market
T93 7240-7281 Sentence denotes μP The shedding coefficients from IP to W
T94 7282-7324 Sentence denotes μ’P The shedding coefficients from AP to W
T95 7325-7359 Sentence denotes 1/ε The lifetime of the virus in W
T96 7360-7418 Sentence denotes δP The proportion of asymptomatic infection rate of people
T97 7419-7478 Sentence denotes κ The multiple of the transmissibility of AP to that of IP.
T98 7480-7538 Sentence denotes The simplified reservoir-people transmission network model
T99 7539-7626 Sentence denotes We assumed that the SARS-CoV-2 might be imported to the seafood market in a short time.
T100 7627-7682 Sentence denotes Therefore, we added the further assumptions as follows:
T101 7683-7733 Sentence denotes The transmission network of Bats-Host was ignored.
T102 7734-8215 Sentence denotes Based on our previous studies on simulating importation [13, 14], we set the initial value of W as following impulse function: \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ Importation= impulse\left(n,{t}_0,{t}_i\right) $$\end{document}Importation=impulsent0ti
T103 8216-8370 Sentence denotes In the function, n, t0 and ti refer to imported volume of the SARS-CoV-2 to the market, start time of the simulation, and the interval of the importation.
T104 8371-9643 Sentence denotes Therefore, the BHRP model was simplified as RP model and is shown as follows: \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ \left\{\kern0.5em \begin{array}{c}\frac{d{S}_P}{dt}={\varLambda}_P-{m}_P{S}_P-{\beta}_P{S}_P\left({I}_P+\upkappa {A}_P\right)-{\beta}_W{S}_PW\kern11em \\ {}\frac{d{E}_P}{dt}={\beta}_P{S}_P\left({I}_P+\upkappa {A}_P\right)+{\beta}_W{S}_PW-\left(1-{\delta}_P\right){\upomega}_P{E}_P-{\delta}_P{\upomega}_P^{\prime }{E}_P-{m}_P{E}_P\kern0.5em \\ {}\frac{d{I}_P}{dt}=\left(1-{\delta}_P\right){\upomega}_P{E}_P-\left({\gamma}_P+{m}_P\right){I}_P\kern16.5em \\ {}\frac{d{A}_P}{dt}={\delta}_P{\upomega}_P^{\prime }{E}_P-\left({\gamma}_P^{\prime }+{m}_P\right){A}_P\kern18.75em \\ {}\frac{d{R}_P}{dt}={\gamma}_P{I}_P+{\gamma}_P^{\prime }{A}_P-{m}_P{R}_P\kern20em \\ {}\frac{dW}{dt}={\mu}_P{I}_P+{\mu}_P^{\prime }{A}_P-\varepsilon W\kern20.5em \end{array}\right. $$\end{document}dSPdt=ΛP−mPSP−βPSPIP+κAP−βWSPWdEPdt=βPSPIP+κAP+βWSPW−1−δPωPEP−δPωP′EP−mPEPdIPdt=1−δPωPEP−γP+mPIPdAPdt=δPωP′EP−γP′+mPAPdRPdt=γPIP+γP′AP−mPRPdWdt=μPIP+μP′AP−εW
T105 9644-9756 Sentence denotes During the outbreak period, the natural birth rate and death rate in the population was in a relative low level.
T106 9757-9867 Sentence denotes However, people would commonly travel into and out from Wuhan City mainly due to the Chinese New Year holiday.
T107 9868-9991 Sentence denotes Therefore, nP and mP refer to the rate of people traveling into Wuhan City and traveling out from Wuhan City, respectively.
T108 9992-10051 Sentence denotes In the model, people and viruses have different dimensions.
T109 10052-10796 Sentence denotes Based on our previous research [15], we therefore used the following sets to perform the normalization: \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ {s}_P=\frac{S_P}{N_P},{e}_P=\frac{E_P}{N_P},{i}_P=\frac{I_P}{N_P}, {a}_P=\frac{A_P}{N_P},{r}_P=\frac{R_P}{N_P},w=\frac{\varepsilon W}{\mu_P{N}_P},\kern0.5em {\mu}_P^{\prime }=c{\mu}_P,\kern0.5em {b}_P={\beta}_P{N}_P,\mathrm{and}\ {b}_W=\frac{\mu_P{\beta}_W{N}_P}{\varepsilon .} $$\end{document}sP=SPNP,eP=EPNP,iP=IPNP,aP=APNP,rP=RPNP,w=εWμPNP,μP′=cμP,bP=βPNP,andbW=μPβWNPε.
T110 10797-10896 Sentence denotes In the normalization, parameter c refers to the relative shedding coefficient of AP compared to IP.
T111 10897-12044 Sentence denotes The normalized RP model is changed as follows: \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ \left\{\begin{array}{c}\frac{d{s}_P}{dt}={n}_P-{m}_P{s}_P-{b}_P{s}_P\left({i}_P+\upkappa {a}_P\right)-{b}_W{s}_Pw\\ {}\frac{d{e}_P}{dt}={b}_P{s}_P\left({i}_P+\upkappa {a}_P\right)+{b}_W{s}_Pw-\left(1-{\delta}_P\right){\upomega}_P{e}_P-{\delta}_P{\upomega}_P^{\prime }{e}_P-{m}_P{e}_P\\ {}\frac{d{i}_P}{dt}=\left(1-{\delta}_P\right){\upomega}_P{e}_P-\left({\gamma}_P+{m}_P\right){i}_P\\ {}\frac{d{a}_P}{dt}={\delta}_P{\upomega}_P^{\prime }{e}_P-\left({\gamma}_P^{\prime }+{m}_P\right){a}_P\kern26.5em \\ {}\frac{d{r}_P}{dt}={\gamma}_P{i}_P+{\gamma}_P^{\prime }{a}_P-{m}_P{r}_P\\ {}\frac{dw}{dt}=\varepsilon \left({i}_P+c{a}_P-w\right)\kern28.2em \end{array}\right. $$\end{document}dsPdt=nP−mPsP−bPsPiP+κaP−bWsPwdePdt=bPsPiP+κaP+bWsPw−1−δPωPeP−δPωP′eP−mPePdiPdt=1−δPωPeP−γP+mPiPdaPdt=δPωP′eP−γP′+mPaPdrPdt=γPiP+γP′aP−mPrPdwdt=εiP+caP−w
T112 12046-12106 Sentence denotes The transmissibility of the SARS-CoV-2 based on the RP model
T113 12107-12186 Sentence denotes In this study, we used the R0 to assess the transmissibility of the SARS-CoV-2.
T114 12187-12371 Sentence denotes Commonly, R0 was defined as the expected number of secondary infections that result from introducing a single infected individual into an otherwise susceptible population [13, 16, 17].
T115 12372-12407 Sentence denotes If R0 > 1, the outbreak will occur.
T116 12408-12451 Sentence denotes If R0 < 1, the outbreak will toward an end.
T117 12452-12544 Sentence denotes In this study, R0 was deduced from the RP model by the next generation matrix approach [18].
T118 12546-12566 Sentence denotes Parameter estimation
T119 12567-12642 Sentence denotes The parameters were estimated based on the following facts and assumptions:
T120 12643-12713 Sentence denotes The mean incubation period was 5.2 days (95% confidence interval [CI]:
T121 12714-12727 Sentence denotes 4.1–7.0) [3].
T122 12728-12822 Sentence denotes We set the same value (5.2 days) of the incubation period and the latent period in this study.
T123 12823-12847 Sentence denotes Thus, ωP = ω’P = 0.1923.
T124 12848-13046 Sentence denotes There is a mean 5-day delay from symptom onset to detection/hospitalization of a case (the cases detected in Thailand and Japan were hospitalized from 3 to 7 days after onset, respectively) [19–21].
T125 13047-13207 Sentence denotes The duration from illness onset to first medical visit for the 45 patients with illness onset before January 1 was estimated to have a mean of 5.8 days (95% CI:
T126 13208-13221 Sentence denotes 4.3–7.5) [3].
T127 13222-13290 Sentence denotes In our model, we set the infectious period of the cases as 5.8 days.
T128 13291-13314 Sentence denotes Therefore, γP = 0.1724.
T129 13315-13461 Sentence denotes Since there was no data on the proportion of asymptomatic infection of the virus, we simulated the baseline value of proportion of 0.5 (δP = 0.5).
T130 13462-13708 Sentence denotes Since there was no evidence about the transmissibility of asymptomatic infection, we assumed that the transmissibility of asymptomatic infection was 0.5 times that of symptomatic infection (κ = 0.5), which was the similar value as influenza [22].
T131 13709-13781 Sentence denotes We assumed that the relative shedding rate of AP compared to IP was 0.5.
T132 13782-13796 Sentence denotes Thus, c = 0.5.
T133 13797-13990 Sentence denotes Since 14 January, 2020, Wuhan City has strengthened the body temperature detection of passengers leaving Wuhan at airports, railway stations, long-distance bus stations and passenger terminals.
T134 13991-14088 Sentence denotes As of January 17, a total of nearly 0.3 million people had been tested for body temperature [23].
T135 14089-14151 Sentence denotes In Wuhan, there are about 2.87 million mobile population [24].
T136 14152-14393 Sentence denotes We assumed that there was 0.1 million people moving out to Wuhan City per day since January 10, 2020, and we believe that this number would increase (mainly due to the winter vacation and the Chinese New Year holiday) until 24 January, 2020.
T137 14394-14475 Sentence denotes This means that the 2.87 million would move out from Wuhan City in about 14 days.
T138 14476-14548 Sentence denotes Therefore, we set the moving volume of 0.2 million per day in our model.
T139 14549-14706 Sentence denotes Since the population of Wuhan was about 11 million at the end of 2018 [25], the rate of people traveling out from Wuhan City would be 0.018 (0.2/11) per day.
T140 14707-14819 Sentence denotes However, we assumed that the normal population mobility before January 1 was 0.1 times as that after January 10.
T141 14820-14937 Sentence denotes Therefore, we set the rate of people moving into and moving out from Wuhan City as 0.0018 per day (nP = mP = 0.0018).
T142 14938-15023 Sentence denotes The parameters bP and bW were estimated by fitting the model with the collected data.
T143 15024-15131 Sentence denotes At the beginning of the simulation, we assumed that the prevalence of the virus in the market was 1/100000.
T144 15132-15323 Sentence denotes Since the SARS-CoV-2 is an RNA virus, we assumed that it could be died in the environment in a short time, but it could be stay for a longer time (10 days) in the unknown hosts in the market.
T145 15324-15339 Sentence denotes We set ε = 0.1.
T146 15341-15348 Sentence denotes Results
T147 15349-15481 Sentence denotes In this study, we assumed that the incubation period (1/ωP) was the same as latent period (1/ω’P) of human infection, thus ωP = ω’P.
T148 15482-16675 Sentence denotes Based on the equations of RP model, we can get the disease free equilibrium point as: \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ \left(\frac{\varLambda_P}{m_P},0,0,0,0,0\right) $$\end{document}ΛPmP00000\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ F=\left[\begin{array}{cccc}0& {\beta}_P\frac{\varLambda_P}{m_P}& {\beta}_P\kappa \frac{\varLambda_P}{m_P}& {\beta}_W\frac{\varLambda_P}{m_P}\\ {}0& 0& 0& 0\\ {}0& 0& 0& 0\\ {}0& 0& 0& 0\end{array}\right],{V}^{-1}=\left[\begin{array}{cccc}\frac{1}{\omega_P+{m}_P}& 0& 0& 0\\ {}A& \frac{1}{\gamma_P+{m}_P}& 0& 0\\ {}B& 0& \frac{1}{\gamma_P^{\hbox{'}}+{m}_P}& 0\\ {}B& E& G& \frac{1}{\varepsilon}\end{array}\right] $$\end{document}F=0βPΛPmPβPκΛPmPβWΛPmP000000000000,V−1=1ωP+mP000A1γP+mP00B01γP'+mP0BEG1ε
T149 16676-18796 Sentence denotes In the matrix: \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ A=\frac{\left(1-{\delta}_P\right){\upomega}_P}{\left({\upomega}_P+{m}_P\right)\left({\gamma}_P+{m}_P\right)} $$\end{document}A=1−δPωPωP+mPγP+mP\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ B=\frac{\delta_P{\upomega}_P}{\left({\upomega}_P+{m}_P\right)\left({\gamma}_p^{\prime }+{m}_P\right)} $$\end{document}B=δPωPωP+mPγp′+mP\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ D=\frac{\left(1-{\delta}_P\right){\mu \upomega}_P}{\left({\upomega}_P+{m}_P\right)\left({\gamma}_P+{m}_P\right)\varepsilon }+\frac{\mu^{\prime }{\delta}_P{\upomega}_P}{\left({\upomega}_P+{m}_P\right)\left({\gamma}_p^{\prime }+{m}_P\right)\varepsilon } $$\end{document}D=1−δPμωPωP+mPγP+mPε+μ′δPωPωP+mPγp′+mPε\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ E=\frac{\mu }{\left({\gamma}_P+{m}_P\right)\varepsilon } $$\end{document}E=μγP+mPε\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ G=\frac{\mu^{\prime }}{\left({\gamma}_p^{\prime }+{m}_P\right)\varepsilon } $$\end{document}G=μ′γp′+mPε
T150 18797-20458 Sentence denotes By the next generation matrix approach, we can get the next generation matrix and R0 for the RP model: \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ F{V}^{-1}=\left[\begin{array}{cccc}{\beta}_p\frac{\varLambda_P}{m_P}A+{\beta}_P\kappa \frac{\varLambda_P}{m_P}+{\beta}_W\frac{\varLambda_P}{m_P}D& \ast & \ast & \ast \\ {}0& 0& 0& 0\\ {}0& 0& 0& 0\\ {}0& 0& 0& 0\end{array}\right] $$\end{document}FV−1=βpΛPmPA+βPκΛPmP+βWΛPmPD∗∗∗000000000000\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ {R}_0=\rho \left(F{V}^{-1}\right)={\beta}_P\frac{\varLambda_P}{m_P}\frac{\left(1-{\delta}_P\right){\omega}_P}{\left({\omega}_P+{m}_P\right)\left({\gamma}_P+{m}_P\right)}+{\beta}_P\kappa \frac{\varLambda_P}{m_P}\frac{\delta_P{\omega}_P}{\left({\omega}_P+{m}_P\right)\left({\gamma}_P^{\hbox{'}}+{m}_P\right)}+{\beta}_W\frac{\varLambda_P}{m_P}\frac{\left(1-{\delta}_P\right)\mu {\omega}_P}{\left({\omega}_P+{m}_P\right)\left({\gamma}_P+{m}_P\right)\varepsilon }+\beta W\frac{\varLambda_P}{m_P}\frac{\mu^{\hbox{'}}{\delta}_P{\omega}_P}{\left({\omega}_P+{m}_P\right)\left({\gamma}_P^{\hbox{'}}+{m}_P\right)\varepsilon } $$\end{document}R0=ρFV−1=βPΛPmP1−δPωPωP+mPγP+mP+βPκΛPmPδPωPωP+mPγP'+mP+βWΛPmP1−δPμωPωP+mPγP+mPε+βWΛPmPμ'δPωPωP+mPγP'+mPε
T151 20459-21677 Sentence denotes The R0 of the normalized RP model is shown as follows: \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ {R}_0={b}_p\frac{n_P}{m_p}\frac{\left(1-{\delta}_P\right){\omega}_P}{\left[\left(1-\delta p\right){\omega}_P+{\delta}_P{\omega}_P^{\hbox{'}}+{m}_P\right]\left({\gamma}_P+{m}_P\right)}+\kappa {b}_P\frac{n_P}{m_P}\frac{\delta_P{\omega}_P^{\hbox{'}}}{\left[\left(1-{\delta}_P\right){\omega}_P+{\delta}_P{\omega}_P^{\hbox{'}}+{m}_P\right]\left({\gamma}_P^{\hbox{'}}+{m}_P\right)}+{b}_W\frac{n_P}{m_P}\frac{\left(1-{\delta}_p\right){\omega}_p}{\left[\left(1-{\delta}_p\right){\omega}_P+{\delta}_P{\omega}_P^{\hbox{'}}+{m}_p\right]\left({\gamma}_P+{m}_P\right)}+{b}_W\frac{n_P}{m_P}\frac{c{\delta}_P{\omega}_P^{\hbox{'}}}{\left[\left(1-{\delta}_p\right){\omega}_P+{\delta}_P{\omega}_P^{\hbox{'}}+{m}_p\right]\left({\gamma}_P^{\hbox{'}}+{m}_P\right)} $$\end{document}R0=bpnPmp1−δPωP1−δpωP+δPωP'+mPγP+mP+κbPnPmPδPωP'1−δPωP+δPωP'+mPγP'+mP+bWnPmP1−δpωp1−δpωP+δPωP'+mpγP+mP+bWnPmPcδPωP'1−δpωP+δPωP'+mpγP'+mP
T152 21678-21819 Sentence denotes Our modelling results showed that the normalized RP model fitted well to the reported SARS-CoV-2 cases data (R2 = 0.512, P < 0.001) (Fig. 2).
T153 21820-22110 Sentence denotes The value of R0 was estimated of 2.30 from reservoir to person, and from person to person and 3.58 from person to person which means that the expected number of secondary infections that result from introducing a single infected individual into an otherwise susceptible population was 3.58.
T154 22111-22155 Sentence denotes Fig. 2 Curve fitting results of the RP model
T155 22157-22167 Sentence denotes Discussion
T156 22168-22326 Sentence denotes In this study, we developed RP transmission model, which considering the routes from reservoir to person and from person to person of SARS-CoV-2 respectively.
T157 22327-22422 Sentence denotes We used the models to fit the reported data in Wuhan City, China from published literature [3].
T158 22423-22510 Sentence denotes The simulation results showed that the R0 of SARS-CoV-2 was 3.58 from person to person.
T159 22511-22582 Sentence denotes There was a research showed that the R0 of SARS-CoV-2 was 2.68 (95% CI:
T160 22583-22598 Sentence denotes 2.47–2.86) [8].
T161 22599-22665 Sentence denotes Another research showed that the R0 of SARS-CoV-2 was 2.2 (95% CI:
T162 22666-22679 Sentence denotes 1.4–3.9) [3].
T163 22680-22739 Sentence denotes The different values might be due to the different methods.
T164 22740-22866 Sentence denotes The methods which Li et al. employed were based on the epidemic growth rate of the epidemic curve and the serial interval [3].
T165 22867-23095 Sentence denotes Our previous study showed that several methods could be used to calculate the R0 based on the epidemic growth rate of the epidemic curve and the serial interval, and different methods might result in different values of R0 [26].
T166 23096-23226 Sentence denotes Our results also showed that the R0 of SARS-CoV-2 was 2.30 from reservoir to person which was lower than that of person to person.
T167 23227-23389 Sentence denotes This means that the transmission route was mainly from person to person rather than from reservoir to person in the early stage of the transmission in Wuhan City.
T168 23390-23550 Sentence denotes However, this result was based on the limited data from a published literature, and it might not show the real situation at the early stage of the transmission.
T169 23551-23679 Sentence denotes Researches showed that the R0 of severe acute respiratory syndrome (SARS) was about 2.7–3.4 or 2–4 in Hong Kong, China [27, 28].
T170 23680-23807 Sentence denotes Another research found that the R0 of SARS was about 2.1 in Hong Kong, China, 2.7 in Singapore, and 3.8 in Beijing, China [29].
T171 23808-23909 Sentence denotes Therefore, we believe that the commonly acceptable average value of the R0 of SARS might be 2.9 [30].
T172 23910-24002 Sentence denotes The transmissibility of the Middle East respiratory syndrome (MERS) is much lower than SARS.
T173 24003-24168 Sentence denotes The reported value of the R0 of MERS was about 0.8–1.3 [31], with the inter-human transmissibility of the disease was about 0.6 or 0.9 in Middle East countries [32].
T174 24169-24284 Sentence denotes However, MERS had a high transmissibility in the outbreak in the Republic of Korea with the R0 of 2.5–7.2 [33, 34].
T175 24285-24461 Sentence denotes Therefore, the transmissibility of SARS-CoV-2 might be higher than MERS in the Middle East countries, similar to SARS, but lower than MERS transmitted in the Republic of Korea.
T176 24462-24535 Sentence denotes To contain the transmission of the virus, it is important to decrease R0.
T177 24536-24639 Sentence denotes According to the equation of R0 deduced from the simplified RP model, R0 is related to many parameters.
T178 24640-24704 Sentence denotes The mainly parameters which could be changed were bP, bW, and γ.
T179 24705-24945 Sentence denotes Interventions such as wearing masks and increasing social distance could decrease the bP, the intervention that close the seafood market could decrease the bW, and shorten the duration form symptoms onset to be diagnosed could decrease 1/γ.
T180 24946-25070 Sentence denotes All these interventions could decrease the effective reproduction number and finally be helpful to control the transmission.
T181 25071-25161 Sentence denotes Since there are too many parameters in our model, several limitations exist in this study.
T182 25162-25295 Sentence denotes Firstly, we did not use the detailed data of the SARS-CoV-2 to perform the estimation instead of using the data from literatures [3].
T183 25296-25542 Sentence denotes We simulated the natural history of the infection that the proportion of asymptomatic infection was 50%, and the transmissibility of asymptomatic infection was half of that of symptomatic infection, which were different to those of MERS and SARS.
T184 25543-25637 Sentence denotes It is known that the proportion of asymptomatic infection of MERS and SARS was lower than 10%.
T185 25638-25720 Sentence denotes Secondly, the parameters of population mobility were not from an accurate dataset.
T186 25721-25858 Sentence denotes Thirdly, since there was no data of the initial prevalence of the virus in the seafood market, we assumed the initial value of 1/100 000.
T187 25859-25934 Sentence denotes This assumption might lead to the simulation been under- or over-estimated.
T188 25935-26171 Sentence denotes In addition, since we did not consider the changing rate of the individual’s activity (such as wearing masks, increasing social distance, and not to travel to Wuhan City), the estimation of importation of the virus might not be correct.
T189 26172-26238 Sentence denotes All these limitations will lead to the uncertainty of our results.
T190 26239-26497 Sentence denotes Therefore, the accuracy and the validity of the estimation would be better if the models fit the first-hand data on the population mobility and the data on the natural history, the epidemiological characteristics, and the transmission mechanism of the virus.
T191 26499-26510 Sentence denotes Conclusions
T192 26511-26721 Sentence denotes By calculating the published data, our model showed that the transmissibility of SARS-CoV-2 might be higher than MERS in the Middle East countries, similar to SARS, but lower than MERS in the Republic of Korea.
T193 26722-26919 Sentence denotes Since the objective of this study was to provide a mathematical model for calculating the transmissibility of SARS-CoV-2, the R0 was estimated based on limited data which published in a literature.
T194 26920-26986 Sentence denotes More data were needed to estimate the transmissibility accurately.

2_test

Id Subject Object Predicate Lexical cue
32111262-31978945-47462505 763-764 31978945 denotes 4
32111262-32007643-47462506 1291-1292 32007643 denotes 9
32111262-25467086-47462507 7791-7793 25467086 denotes 13
32111262-31415559-47462508 7795-7797 31415559 denotes 14
32111262-24736407-47462509 10084-10086 24736407 denotes 15
32111262-25467086-47462510 12359-12361 25467086 denotes 13
32111262-31924848-47462511 12363-12365 31924848 denotes 16
32111262-31306888-47462512 12367-12369 31306888 denotes 17
32111262-16079251-47462513 13704-13706 16079251 denotes 22
32111262-27834157-47462514 23091-23093 27834157 denotes 26
32111262-12766206-47462515 23671-23673 12766206 denotes 27
32111262-12766208-47462516 23675-23677 12766208 denotes 28
32111262-14720403-47462517 23803-23805 14720403 denotes 29
32111262-28351976-47462518 23905-23907 28351976 denotes 30
32111262-24239323-47462519 24059-24061 24239323 denotes 31
32111262-23831141-47462520 24164-24166 23831141 denotes 32
32111262-28703921-47462521 24276-24278 28703921 denotes 33
32111262-26690750-47462522 24280-24282 26690750 denotes 34
T2621 763-764 31978945 denotes 4
T24062 1291-1292 32007643 denotes 9
T99805 7791-7793 25467086 denotes 13
T53159 7795-7797 31415559 denotes 14
T22671 10084-10086 24736407 denotes 15
T63646 12359-12361 25467086 denotes 13
T96528 12363-12365 31924848 denotes 16
T77535 12367-12369 31306888 denotes 17
T95670 13704-13706 16079251 denotes 22
T45899 23091-23093 27834157 denotes 26
T68538 23671-23673 12766206 denotes 27
T29295 23675-23677 12766208 denotes 28
T86455 23803-23805 14720403 denotes 29
T86121 23905-23907 28351976 denotes 30
T84435 24059-24061 24239323 denotes 31
T24642 24164-24166 23831141 denotes 32
T65449 24276-24278 28703921 denotes 33
T3047 24280-24282 26690750 denotes 34