PMC:7045880 / 9174-10111
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 183 | 360-365 | Species | denotes | human | Tax:9606 |
| 184 | 377-390 | Species | denotes | coronaviruses | Tax:11118 |
| 185 | 525-535 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 186 | 557-560 | Species | denotes | CoV | Tax:11118 |
| 187 | 566-571 | Species | denotes | human | Tax:9606 |
| 188 | 572-580 | Species | denotes | SARS-CoV | Tax:694009 |
| 189 | 691-701 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 190 | 767-777 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 191 | 809-816 | Species | denotes | BetaCoV | Tax:694002 |
| 192 | 408-443 | Disease | denotes | IVDC-HB-01/2019(GISAID accession ID | MESH:C000657245 |
| 193 | 900-919 | Disease | denotes | GISAID accession ID | MESH:C537985 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T46 | 18-23 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T47 | 75-78 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T48 | 119-123 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T49 | 144-147 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T50 | 191-195 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T51 | 315-319 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T52 | 334-338 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T53 | 856-860 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T31 | 525-533 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T32 | 547-551 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T33 | 572-580 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T34 | 691-699 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T35 | 767-775 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T91 | 18-23 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T92 | 102-107 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T93 | 119-123 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T94 | 191-195 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T95 | 315-319 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T96 | 334-338 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T97 | 360-365 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T98 | 370-376 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animal |
| T99 | 413-415 | http://purl.obolibrary.org/obo/CLO_0003622 | denotes | HB |
| T100 | 460-463 | http://purl.obolibrary.org/obo/CLO_0001053 | denotes | 121 |
| T101 | 536-541 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T102 | 566-571 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T103 | 793-798 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T104 | 856-860 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T59 | 441-443 | Chemical | denotes | ID | http://purl.obolibrary.org/obo/CHEBI_141439 |
| T60 | 917-919 | Chemical | denotes | ID | http://purl.obolibrary.org/obo/CHEBI_141439 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T88 | 0-139 | Sentence | denotes | After inoculating cells with the nasopharyngeal and oropharyngeal samples, RNA was extracted from the virus-replicated cell culture medium. |
| T89 | 140-240 | Sentence | denotes | The RNA was amplified with primers for full-length gene analysis, and NGS was performed using Miseq. |
| T90 | 241-320 | Sentence | denotes | De novo assembly of the NGS sequence secured 28,818 bp of the full-length gene. |
| T91 | 321-592 | Sentence | denotes | The acquired gene was compared with 57 human and animal coronaviruses, including Wuhan/IVDC-HB-01/2019(GISAID accession ID: EPI_ISL_402119~121), which was first reported in Wuhan, 54 reported full-length SARS-CoV-2 genes, Bat-SARS-like CoV, and human SARS-CoV (Figure 3). |
| T92 | 593-788 | Sentence | denotes | The analysis showed that the sequence was included in the same cluster as the previously reported SARS-CoV-2 sequence and showed high homology of > 99.5% with other isolated SARS-CoV-2 sequences. |
| T93 | 789-937 | Sentence | denotes | The virus was named BetaCoV/Korea/KCDC03/2020, and its full-length gene sequence was registered in WHO GISAID (GISAID accession ID: EPI_ISL_407193). |