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PMC:7045880 / 87-1366 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
15 32-40 Species denotes patients Tax:9606
16 151-162 Species denotes coronavirus Tax:11118
17 164-174 Species denotes SARS-CoV-2 Tax:2697049
18 278-286 Species denotes patients Tax:9606
19 401-409 Species denotes patients Tax:9606
20 58-67 Disease denotes pneumonia MESH:D011014
21 185-215 Disease denotes 2019 novel coronavirus disease MESH:C000657245
22 226-234 Disease denotes COVID-19 MESH:C000657245
23 292-300 Disease denotes COVID-19 MESH:C000657245
26 486-494 Species denotes patients Tax:9606
27 500-508 Disease denotes COVID-19 MESH:C000657245
35 824-834 Species denotes SARS-CoV-2 Tax:2697049
36 859-867 Species denotes patients Tax:9606
37 931-941 Species denotes SARS-CoV-2 Tax:2697049
38 947-955 Species denotes SARS-CoV Tax:694009
39 961-969 Species denotes MERS-CoV Tax:1335626
40 1003-1014 Species denotes Coronavirus Tax:11118
41 1074-1088 Disease denotes virus-infected MESH:D001102
48 1113-1123 Species denotes SARS-CoV-2 Tax:2697049
49 1151-1159 Species denotes patients Tax:9606
50 1253-1260 Species denotes BetaCoV Tax:694002
51 1177-1186 Disease denotes pneumonia MESH:D011014
52 1204-1212 Disease denotes coughing MESH:D003371
53 1217-1222 Disease denotes fever MESH:D005334

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 430-453 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T2 530-535 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T3 563-569 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T4 676-681 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T5 725-731 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T6 765-771 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T7 1094-1099 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 430-453 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T2 436-453 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T2 58-67 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T3 164-172 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T4 226-234 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 292-300 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 500-508 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 824-832 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T8 931-939 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 947-955 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 1113-1121 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T11 1177-1186 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T2 0-10 http://purl.obolibrary.org/obo/BFO_0000030 denotes Objectives
T3 255-267 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T4 430-453 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T5 530-535 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T6 551-556 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T7 631-636 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T8 651-656 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T9 671-675 http://purl.obolibrary.org/obo/CLO_0009524 denotes Vero
T10 671-675 http://purl.obolibrary.org/obo/CLO_0050515 denotes Vero
T11 676-681 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T12 759-764 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T13 1074-1079 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T14 1089-1093 http://purl.obolibrary.org/obo/CLO_0009524 denotes Vero
T15 1089-1093 http://purl.obolibrary.org/obo/CLO_0050515 denotes Vero
T16 1094-1099 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T17 1237-1242 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 585-593 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545
T2 1051-1059 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 454-463 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T3 0-10 Sentence denotes Objectives
T4 11-268 Sentence denotes Following reports of patients with unexplained pneumonia at the end of December 2019 in Wuhan, China, the causative agent was identified as coronavirus (SARS-CoV-2), and the 2019 novel coronavirus disease was named COVID-19 by the World Health Organization.
T5 269-410 Sentence denotes Putative patients with COVID-19 have been identified in South Korea, and attempts have been made to isolate the pathogen from these patients.
T6 412-419 Sentence denotes Methods
T7 420-557 Sentence denotes Upper and lower respiratory tract secretion samples from putative patients with COVID-19 were inoculated onto cells to isolate the virus.
T8 558-637 Sentence denotes Full genome sequencing and electron microscopy were used to identify the virus.
T9 639-646 Sentence denotes Results
T10 647-719 Sentence denotes The virus replicated in Vero cells and cytopathic effects were observed.
T11 720-909 Sentence denotes Full genome sequencing showed that the virus genome exhibited sequence homology of more than 99.9% with SARS-CoV-2 which was isolated from patients from other countries, for instance China.
T12 910-1002 Sentence denotes Sequence homology of SARS-CoV-2 with SARS-CoV, and MERS-CoV was 77.5% and 50%, respectively.
T13 1003-1100 Sentence denotes Coronavirus-specific morphology was observed by electron microscopy in virus-infected Vero cells.
T14 1102-1112 Sentence denotes Conclusion
T15 1113-1223 Sentence denotes SARS-CoV-2 was isolated from putative patients with unexplained pneumonia and intermittent coughing and fever.
T16 1224-1279 Sentence denotes The isolated virus was named BetaCoV/Korea/KCDC03/2020.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 58-67 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 1177-1186 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 1204-1212 Phenotype denotes coughing http://purl.obolibrary.org/obo/HP_0012735
T4 1217-1222 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945