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PMC:7045880 / 6735-7857 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
159 129-145 Chemical denotes paraformaldehyde MESH:C003043
160 155-169 Chemical denotes glutaraldehyde MESH:D005976
161 179-188 Chemical denotes phosphate MESH:D010710
162 434-450 Chemical denotes osmium tetroxide MESH:D009993
163 489-494 Chemical denotes water MESH:D014867
164 600-607 Chemical denotes ethanol MESH:D000431
165 702-717 Chemical denotes propylene oxide MESH:C009068
166 922-928 Chemical denotes nickel MESH:D009532
167 962-976 Chemical denotes uranyl acetate MESH:C005460
168 243-251 Disease denotes infected MESH:D007239
169 662-673 Disease denotes dehydration MESH:D003681

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T33 89-94 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T34 237-242 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T64 89-94 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T65 237-242 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T66 257-262 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T67 496-498 http://purl.obolibrary.org/obo/CLO_0037161 denotes en
T68 803-805 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T69 911-912 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T70 1010-1011 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T31 16-24 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545
T32 53-61 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545
T33 155-169 Chemical denotes glutaraldehyde http://purl.obolibrary.org/obo/CHEBI_64276
T34 179-188 Chemical denotes phosphate http://purl.obolibrary.org/obo/CHEBI_18367|http://purl.obolibrary.org/obo/CHEBI_26020|http://purl.obolibrary.org/obo/CHEBI_35780|http://purl.obolibrary.org/obo/CHEBI_43474
T38 189-195 Chemical denotes buffer http://purl.obolibrary.org/obo/CHEBI_35225
T39 376-382 Chemical denotes buffer http://purl.obolibrary.org/obo/CHEBI_35225
T40 393-401 Chemical denotes fixative http://purl.obolibrary.org/obo/CHEBI_50913
T41 402-410 Chemical denotes solution http://purl.obolibrary.org/obo/CHEBI_75958
T42 434-450 Chemical denotes osmium tetroxide http://purl.obolibrary.org/obo/CHEBI_88215
T43 434-440 Chemical denotes osmium http://purl.obolibrary.org/obo/CHEBI_30687
T44 489-494 Chemical denotes water http://purl.obolibrary.org/obo/CHEBI_15377
T45 496-498 Chemical denotes en http://purl.obolibrary.org/obo/CHEBI_30347
T46 545-552 Chemical denotes acetate http://purl.obolibrary.org/obo/CHEBI_30089|http://purl.obolibrary.org/obo/CHEBI_47622
T48 600-607 Chemical denotes ethanol http://purl.obolibrary.org/obo/CHEBI_16236
T49 702-717 Chemical denotes propylene oxide http://purl.obolibrary.org/obo/CHEBI_38685
T50 702-711 Chemical denotes propylene http://purl.obolibrary.org/obo/CHEBI_16052
T51 712-717 Chemical denotes oxide http://purl.obolibrary.org/obo/CHEBI_25741|http://purl.obolibrary.org/obo/CHEBI_29356
T53 922-928 Chemical denotes nickel http://purl.obolibrary.org/obo/CHEBI_28112
T54 969-976 Chemical denotes acetate http://purl.obolibrary.org/obo/CHEBI_30089|http://purl.obolibrary.org/obo/CHEBI_47622
T56 1025-1033 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T10 220-229 http://purl.obolibrary.org/obo/GO_0097264 denotes autolysis
T11 220-229 http://purl.obolibrary.org/obo/GO_0001896 denotes autolysis

2_test

Id Subject Object Predicate Lexical cue
32149036-26235643-81764452 1115-1117 26235643 denotes 13
32149036-19844604-81764452 1115-1117 19844604 denotes 13

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T64 0-2 Sentence denotes 6.
T65 3-35 Sentence denotes Transmission electron microscopy
T66 36-263 Sentence denotes For transmission electron microscopy, the inoculated cells were prefixed by incubating in 2% paraformaldehyde and 2.5% glutaraldehyde in 0.1 M phosphate buffer (pH 7.4) to prevent the autolysis of the cells infected with virus.
T67 264-451 Sentence denotes To minimize the chemical reaction between pre- and post-fixation, the slides were washed 3 times using the same buffer as in the fixative solution and post-fixed with 1% osmium tetroxide.
T68 452-553 Sentence denotes After washing 3 times with deionized water, en bloc staining was performed using 0.5% uranyl acetate.
T69 554-718 Sentence denotes Thereafter, 30%, 50%, 70%, 80%, 90%, and 100% ethanol were used sequentially in ascending concentration for dehydration, which was substituted with propylene oxide.
T70 719-812 Sentence denotes The slides were then embedded in Epon812 plastic resin, and polymerized at 70°C for 48 hours.
T71 813-977 Sentence denotes The prepared plastic block was cut to 70-nm thick sections using an ultramicrotome and mounted on a 100-mesh nickel grid, and electrostained with 5% uranyl acetate.
T72 978-1122 Sentence denotes The sections were observed with a transmission electron microscope (Libra120, Carl Zeiss, Germany) at an acceleration voltage of 120 kV [13–15].

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T8 662-673 Phenotype denotes dehydration http://purl.obolibrary.org/obo/HP_0001944